Cellular Protein Sorting and Ubiquitination
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Questions and Answers

What type of signals play a crucial role in directing proteins to their correct cellular destinations?

  • Sorting signal (correct)
  • Ubiquitilation
  • Hydroxylation
  • Apoptotic signals

Choose all the correct answers that specific to phase G2

  • G phase stands for gap phase (correct)
  • Start/restriction point (R) is located in this phase
  • The relative amount of DNA is the smallest here
  • The relative amount of DNA is greatest here (correct)
  • DNA replication occurs in this phase

What does happen with the indigestible substances uptake by endocytosis or phagocytosis?

  • They become lipofuscin granules that are secreted by the cell
  • Protein-containing residues forms lipofuscin (correct)
  • Inorganic (e.g. carbon/soot) indigestible particles can induce tissue regeneration
  • Vesicles contain indigestible materials from apoptotic bodies
  • They are stored in lipid droplets

Which process is not characterized by chromatin condensation?

<p>necrosis (C)</p> Signup and view all the answers

N-glycosylation use -NXS groups of following amino acid:

<p>Asn (B)</p> Signup and view all the answers

Match the process with the corresponding phase of mitosis:

  • Chromatin condenses into visible chromosomes

<p>Prophase</p> Signup and view all the answers

Match the process with the corresponding phase of mitosis:

  • Sister chromatids are pulled apart

<p>Anaphase</p> Signup and view all the answers

Match the process with the corresponding phase of mitosis: Mitotic spindle begins to form

<p>Prophase</p> Signup and view all the answers

Match the process with the corresponding phase of mitosis:
Cleavage furrow formation

<p>Cytokinesis</p> Signup and view all the answers

Match the process with the corresponding phase of mitosis: Chromosomes align at the cell's equator

<p>Metaphase</p> Signup and view all the answers

What can be the advantage at a blue filter before the condense lens in a light microscope?

<p>The blue light has relative short wavelength. The resolution of the microscope can be increased because shorter wavelength increase the resolution (@)</p> Signup and view all the answers

Which is NOT true for the confocal microscope?

<p>It has lower resolution than the general fluorescence microscope (@)</p> Signup and view all the answers

Which statement is NOT TRUE for mitochondria?

<p>Their outer membrane folds in, creating enlarged surface area (C)</p> Signup and view all the answers

O-glycosylation use -OH groups of following amino acids:

<p>Ser, Thr (C)</p> Signup and view all the answers

The last universal common ancestor (LUCA) is:

<p>The node on the tree of life from which the fundamental prokaryotic domains (archea and bacteria) diverge (A)</p> Signup and view all the answers

Which enzyme is capable of neutralizing hydrogene-peroxide?

<p>Catalase (@)</p> Signup and view all the answers

Which of the following pairs is mismatch?

<p>Lysosome : protein synthesis (@)</p> Signup and view all the answers

Which of the followings is the characteristic protein of the desmosome?

<p>Cadherin (A)</p> Signup and view all the answers

List minimum 4 characteristics of the undifferentiated ES cells:

<ol> <li>Pluripotency</li> <li>Self-renewal</li> <li>Expression of Stem Cell Markers</li> <li>Normal Karyotype</li> </ol> Signup and view all the answers

What is the purpose of adding trypsin to cell culture in an experiment?

<p>To disaggregate the cells (@)</p> Signup and view all the answers

What organelle/structure is involved in secretion of exosomes?

<p>Multivesicular body (B)</p> Signup and view all the answers

Which of the following is a characteristic feature of G- proteins?

<p>They function as molecular switches in signal transduction (@)</p> Signup and view all the answers

Which of the following is a major difference between transmission electron microscopy (TEM) and scanning electron microscopy (SEM)?

<p>TEM visualizes internal structures, while SEM shows surface morphology (@)</p> Signup and view all the answers

Which statement about intermediate filaments is incorrect?

<p>They are uniform in all types of eukaryotic cells. (D)</p> Signup and view all the answers

Indirect immunocytochemistry's most important advantage is the...

<p>enhanced sensitivity (@)</p> Signup and view all the answers

The average thickness of the plasma membrane of eukaryotic cells is...

<p>6–10 nanometer (A)</p> Signup and view all the answers

Who is credited with discovering and developing iPS technology?

<p>Shinya Yamanaka (D)</p> Signup and view all the answers

What is the typical location of microfilaments?

<p>All of them (@)</p> Signup and view all the answers

SNARE proteins have a fundamental role in (blank 1 ..........). The two main SNARE categories are the v-SNARE that are located on the (blank 2 ..........) and the t-SNARE that are located on the target membrane. The recognition of appropriate membrane surface is also mediated by SNARE-pairs. A SNARE can make connections with each other via their (blank 3 ........) domains. This interactions (blank 4 .......) calcium-ions. The bacterial toxin botulinum affects the SNARE proteins in neuron cells, thus paralysis is directly caused by prevention of (blank 5 ......) in the neuron-muscle synapses.

<p>Blank 1 = Membrane fusion Blank 2 = Vesicle membrane Blank 3 = Coiled-coil Blank 4 = Is dependent of Blank 5 = Neurotransmitter release</p> Signup and view all the answers

The motor protein interacting with actin microfilaments is:

<p>Myosin (@)</p> Signup and view all the answers

Which of the following is the primary function of fermentation?

<p>Oxidize NAD⁺ to NADH (C)</p> Signup and view all the answers

Condensing plays a critical role in the formation of metaphase chromosomes

<p>True (A)</p> Signup and view all the answers

Give at least 5 cell morphological changes induced by the pro-apoptotic factors

<ol> <li>Cell Shrinkage</li> <li>Chromatin Condensation</li> <li>Plasma membrane blebbing</li> <li>Nuclear Fragmentation</li> <li>Formation of apoptotic bodies</li> </ol> Signup and view all the answers

Which proposition is correct regarding the caspases?

<p>Caspase 9 is involved in internal apoptotic pathway. (D)</p> Signup and view all the answers

Which is not a role of protein glycosylation?

<p>Sorting (D)</p> Signup and view all the answers

What happens during the interphase?

<p>Duplication of cell content (C)</p> Signup and view all the answers

Which part of mouse IgG molecule will be use to immunize a goat in order to gain anti-mouse antibodies as second antibodies?

<p>Whole molecule (C)</p> Signup and view all the answers

Which is not true for desmosome?

<p>It contains actin filaments (@)</p> Signup and view all the answers

Which is NOT true for extracellular vesicles?

<p>They are just the garbage bag of the cells. (B)</p> Signup and view all the answers

Which of the following best approximates the diameter of a typical human cell?

<p>20 µm (D)</p> Signup and view all the answers

How does the G-protein return to its inactive state?

<p>The alpha subunit hydrolyzes GTP to GDP. (@)</p> Signup and view all the answers

The motor protein interacting with actin microfilaments is:

<p>Myosin (@)</p> Signup and view all the answers

Which of the following is the primary function of fermentation?

<p>Oxidize NADH to NAD⁺ (B)</p> Signup and view all the answers

What is the role of telomerase?

<p>It allows germ cells and stem cells to avoid the Hayflick limit on cell division (C)</p> Signup and view all the answers

Which of the following is a typical component of SER?

<p>Calmodulin (B)</p> Signup and view all the answers

A cell membrane is said to be a bilayer. What forms the two layers?

<p>Phospholipid molecules that self-arrange tail-to-tail. (D)</p> Signup and view all the answers

Which of the following is NOT a plasma membrane receptor?

<p>Estrogen receptor (C)</p> Signup and view all the answers

Which of the following is NOT TRUE for desmosomes?

<p>It contains actin filaments. (A)</p> Signup and view all the answers

Which of the following statements regarding a nucleosome is correct?

<p>It contains approximately 146 base pairs of DNA (D)</p> Signup and view all the answers

Match each process with the corresponding phase(s) of mitosis. Some processes may correspond to more than one phase

  1. Chromatin condenses into visible chromosomes = ........
  2. Nuclear envelope disintegrates = ..............
  3. Cleavage furrow formation = ..............
  4. Sister chromatids are pulled apart = ...............
  5. Chromosomes align at the cell's equator = .............
  6. Mitotic spindle begins to form = ...............

<ol> <li>Prophase</li> <li>Prometaphase / Metaphase</li> <li>Cytokinesis</li> <li>Anaphase</li> <li>Metaphase</li> <li>Prophase</li> </ol> Signup and view all the answers

Which is NOT true for the confocal microscope?

<p>It has lower resolution than the general fluorescent microscope (A)</p> Signup and view all the answers

Origin of engulfment of a prokaryotic cell:

<p>Mitochondria (C)</p> Signup and view all the answers

Which is true about LDL?

<p>It contains proteins and lipids (A)</p> Signup and view all the answers

Oligosaccharides are pooled in the rER via this component of the ER membrane:

<p>Dolichol (A)</p> Signup and view all the answers

What is the cis face of the Golgi heavily involved in?

<p>ER protein sorting (D)</p> Signup and view all the answers

Which type of the microscopes are used in routine laboratories for live cell inspection?

<p>Light microscope (B)</p> Signup and view all the answers

How many times can a cell divide in a finite cell line culture?

<p>Approximately 40-60 times (A)</p> Signup and view all the answers

The spot desmosome.....

<p>contains cadherins (D)</p> Signup and view all the answers

Actin-membrane links are required for membrane links. EXCEPT:

<p>F- actin- kinesin- microtubule (C)</p> Signup and view all the answers

G0 phase:

<p>Cells can return to G0 from G1 (@)</p> Signup and view all the answers

Which microscope is suitable for the evolution of immunogold stained pancreas sections

<p>Transmission electron microscope (D)</p> Signup and view all the answers

What second messenger can be generated during the activation of protein G?

<p>cAMP (D)</p> Signup and view all the answers

Motorprotein interacting with microtubules in cilia:

<p>Dynein (C)</p> Signup and view all the answers

Characteristic components of lipid rafts are:

<p>Cholesterol (D)</p> Signup and view all the answers

Which organelle is involved in apoptosis?

<p>Mitochondria (@)</p> Signup and view all the answers

What is common in microfilaments, microtubules and intermediary filament?

<p>Their proteins have no signal sequence at their N terminus (A)</p> Signup and view all the answers

What kind of molecular modification can result in a euchromatin nucleus in a liver cell?

<p>Histone acetylation (D)</p> Signup and view all the answers

What is a defining secretory feature of senescent cells?

<p>SASP (senescence-associated secretory phenotype) (D)</p> Signup and view all the answers

Localization of M-6-P phosphorylation is:

<p>Cis Golgi (C)</p> Signup and view all the answers

What is NOT a function of the extracellular vesicles?

<p>Endocytosis (B)</p> Signup and view all the answers

Human mitochondrial DNA encodes for..........

<p>2 rRNAs (C)</p> Signup and view all the answers

What is pluripotent stem cells?

<p>Cells found in the inner mass of blastocysts that can differentiate into over 200 different cell types except placental cells (A)</p> Signup and view all the answers

It as all a function of the rER EXCEPT:

<p>Removal of the NSL signal by signal peptidase (B)</p> Signup and view all the answers

In scanning electron microscopy (SEM), what type of signal is primarily detected to produce the final image?

<p>Secondary electrons (C)</p> Signup and view all the answers

Choose the correct pairing:

<p>Peroxisome - bile acid synthesis (@)</p> Signup and view all the answers

Which of the following cell organelles actively participates in animal cell apoptosis?

<p>Mitochondria (C)</p> Signup and view all the answers

What is a disadvantage of adult stem cells over embryonic stem cells?

<p>They are difficult to locate (B)</p> Signup and view all the answers

What organelle/ structure is involved in secretion of exosomes?

<p>Multivesicular body (B)</p> Signup and view all the answers

Which of the following is NOT TRUE for desmosome?

<p>It contains actin filaments (D)</p> Signup and view all the answers

Motorprotein interacting with microtubules in cilia:

<p>Dyenein (@)</p> Signup and view all the answers

Multiple choice question: Choose all the correct answers that specific to the M phase:

<p>Gene expression is arrested in this phase (A), For it to start, it is important that the DNA is in a duplicated state (D)</p> Signup and view all the answers

Which type of signals direct the proteins to their appropriate cellular destinations?

<p>Sorting signals (D)</p> Signup and view all the answers

Active genes are probably located in euchromatic regions of DNA

<p>True (A)</p> Signup and view all the answers

Transport of water by facilitated diffusion requires:

<p>Aquaporin (B)</p> Signup and view all the answers

Which of the following antibodies can we isolate from the serum of a rabbit immunized with anti-insulin mouse antibodies?

<p>Anti-rabbit mouse IgG antibodies (B)</p> Signup and view all the answers

How many centrioles are there in a cell in G2 phase?

<p>4</p> Signup and view all the answers

Which of the following antibodies can we isolate from the serum of a rabbit immunized with anti-insulin mouse antibodies?

<p>Anti-mouse rabbit IgG antibodies (@)</p> Signup and view all the answers

Role og gamma tubulin is:

<p>Nucleation (D)</p> Signup and view all the answers

The last universal common ancestor (LUCA) is:

<p>The node on the tree of life from which the fundamental prokaryotic domains (Archea and bacteria) diverge (C)</p> Signup and view all the answers

What is the purpose of uncoupling proteins in mammalian brown adipose tissue (baby fat)?

<p>They function as a source of heat production during exposure to cold temperatures (D)</p> Signup and view all the answers

Who is credited with discovering and developing iPS technology?

<p>Shinya Yamanaka (@)</p> Signup and view all the answers

Indirect immunocytochemistry's most important advantage is the...

<p>enhanced sensitivity (@)</p> Signup and view all the answers

The average thickness of the plasma membrane of eukaryotic cells is...

<p>6–10 nanometer (A)</p> Signup and view all the answers

Which process is not characterized by chromatin condensation?

<p>Necrosis (C)</p> Signup and view all the answers

What does it happen with the indigestible substances uptake by endocytosis or phagocytosis?

<p>Protein-containing residues forms lipofuscin (B)</p> Signup and view all the answers

N-glycosylation use -NXS groups of following amino acids:

<p>Asn (B)</p> Signup and view all the answers

List minimum 4 characteristics of the undifferentiated ES cells

<ol> <li>Self renewal</li> <li>Pluripotency</li> <li>Expression of specific markers</li> <li>Small, round morphology</li> </ol> Signup and view all the answers

O-glycosylation use -OH groups of following amino acids:

<p>Ser, Thr (C)</p> Signup and view all the answers

Which statement is NOT TRUE for mitochondria?

<p>Their outer membrane folds in, creating enlarged surface area (C)</p> Signup and view all the answers

Which of the following piece(s) of equipment is (are) required to count cells in cell culture?

  1. Timer
  2. Hemocytometer
  3. Microscope
  4. Incubator

<p>2 and 3 (A)</p> Signup and view all the answers

Wich cytoskeletal component plays a crucial role in cytokinesis?

<p>Actin and myosin filaments (@)</p> Signup and view all the answers

Which of the following is an active cell death process?

  1. Apoptosis
  2. Necrosis
  3. Necropoptosis
  4. Lysis

<p>1 + 3 (@)</p> Signup and view all the answers

Which cytological staining is suitable to detect the sER?

<p>The sER is undetectable vie cytological staining (D)</p> Signup and view all the answers

What is NOT common in mitochondria and peroxisome?

<p>Limited protein synthesis (B)</p> Signup and view all the answers

By inhibiting one of the listed molecules we could reduce the release the Ca2+ from the endoplasmic reticulum. This is the......

<p>Phospholipase C (C)</p> Signup and view all the answers

The following cells are able to secrete ECM proteins:

<p>Fibroblast and smooth muscle cells (A)</p> Signup and view all the answers

The NSL signal:

<p>Is part of proteins to be imported to the nucleus (C)</p> Signup and view all the answers

Which one is NOT the component of the eukaryotic cell membrane?

<p>Cardiolipin (A)</p> Signup and view all the answers

In which of the cell compartment is an endocytosed ligand separated from its receptor, generally?

<p>Early endosome (D)</p> Signup and view all the answers

Which of the following is NOT a charcteristic of receptor mediated endocytosis?

<p>Phagosome is formed (C)</p> Signup and view all the answers

Earth formed 4.5 billion years ago, but life did not show until around....

<p>3.7 billion years ago (D)</p> Signup and view all the answers

Is this statement correct? Please briefly explain your answer! "The pars amorpha in the nucleolus contains high amount of rDNA"

<p>The statement is not correct because:</p> <p>The pars amorpha (a part of the nucleolus) does not contain a lot of rDNA. Instead, it is where inactive rDNA is stored and where rRNA transcription starts. The actual active rDNA, which is being used to make rRNA, is found in another part of the nucleolus called the dense fibrillar component (pars fibrosa). This is where most of the work of making and processing rRNA happens.</p> Signup and view all the answers

Which cell organelles are involved in detoxification?

<p>b and c (@)</p> Signup and view all the answers

List 5 different cell-to-cell junctions found between epithelial cells. Give their major function in key words! Itemized answers are acceptable!

<ol> <li>Tight junctions (zonula occlusense) = Seal adjacent cells to prevent paracellular transport; maintain polarity.</li> <li>Adherens junctions (zona adherens) = Provide mechanical stability; link actin cytoskeletons of adjacent cells.</li> <li>Desmosomes (Macula adherens) = Provide strong adhesion; resist mechanical stress through intermediate filaments.</li> <li>Gap junctions = Facilitate direct cell-to-cell communication; allow exchange of ions and small molecules.</li> <li>Hemidesmosomes = Anchor epithelial cells to the basal lamina; provide structural stability.</li> </ol> Signup and view all the answers

Write three examples of why stem cells researches are so important

<ol> <li>Understanding human development and deseases</li> <li>Regenerating medicine and tissue repair</li> <li>Drug development and testing</li> </ol> Signup and view all the answers

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Study Notes

Sorting Signals

  • Sorting signals are specific amino acid sequences within a protein that direct the protein to its correct cellular location.
  • These signals act as addresses, guiding the protein to its target compartment or organelle within the cell.
  • Sorting signals can be located at the amino or carboxyl terminus of the protein or internally within the polypeptide chain.
  • Different types of sorting signals direct proteins to different destinations, reflecting the complexity of intracellular trafficking pathways.
  • They mediate the process of protein targeting, enabling cellular organization and function.

Ubiquitination

  • Ubiquitination is a protein modification that marks proteins for degradation.
  • It involves the covalent attachment of ubiquitin, a small protein, to target proteins.
  • Ubiquitination tags proteins for degradation by the proteasome, a large protein complex that breaks down proteins into smaller peptides.
  • This process plays a critical role in protein homeostasis and regulating various cellular pathways.
  • Unlike sorting signals that direct proteins to specific destinations, ubiquitination signals are associated with targeted destruction rather than transport.

Degradation Signals

  • Degradation signals are specific sequences or structures within a protein that mark it for destruction.
  • These signals often involve amino acid motifs or post-translational modifications that target the protein for proteolytic degradation.
  • These signals are distinct from sorting signals, which direct the protein to a specific compartment.
  • Different cellular processes like quality control, cellular response to stress, and receptor recycling utilize degradation signals.
  • Degradation signals are crucial for maintaining a controlled cellular environment due to their role in eliminating damaged or unwanted proteins.

Apoptotic Signals

  • Apoptotic signals regulate programmed cell death, a naturally occurring process essential for development and homeostasis.
  • The signals can trigger a cascade of events leading to the dismantling and removal of the cell.
  • These signals are unrelated to directing proteins to their correct cellular locations or targeting them for degradation.
  • Unlike sorting or degradation signals, they lead to the entire cell's demise.
  • In summary, they initiate a distinct cellular response, unlike the other signals listed.

Hydroxylation

  • Hydroxylation is a post-translational modification where a hydroxyl group is added to an amino acid residue in a protein.
  • This modification can influence protein stability, activity, and interactions with other molecules.
  • While specific hydroxylation signals can be involved in targeting certain proteins, their primary function is not directed transport or degradation.
  • Hydroxylation often plays a role in protein stability, or function, but not in transport or direct targeting as sorting signals do.
  • Hydroxylation modifications are crucial in orchestrating intricate molecular mechanisms within the cell.

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Description

This quiz explores the mechanisms of sorting signals in proteins and the process of ubiquitination. Participants will learn how specific amino acid sequences direct proteins to their cellular destinations and the role of ubiquitination in protein degradation. Test your knowledge on these vital cellular processes.

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