Cellular Biology I: The Endomembrane System
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Questions and Answers

What is a key role of the dynamin protein in vesicle transport?

  • It helps to attach the vesicle to the target membrane.
  • It mediates the synthesis of phospholipids in peroxisomes.
  • It assists in the degradation of cargo within lysosomes.
  • It is involved in pinching off vesicles coated with clathrin. (correct)
  • Which type of vesicle is involved in retrograde transport from the Golgi back to the ER?

  • COPI-coated vesicles (correct)
  • Clathrin-coated vesicles
  • Retromer-coated vesicles
  • COPII-coated vesicles
  • What purpose do retromer-coated vesicles serve in cellular transport?

  • They facilitate the fusion of endosomes with lysosomes.
  • They are involved in the retrieval of components from the plasma membrane.
  • They transport enzymes to the ER for protein synthesis.
  • They mediate transport from endosomes to the Golgi apparatus. (correct)
  • How do lysosomes maintain their acidic internal pH?

    <p>Through the active transport of H+ ions driven by an ATPase.</p> Signup and view all the answers

    What is a distinctive characteristic of clathrin-coated vesicles?

    <p>They form a basket-like structure using triskelion assemblies.</p> Signup and view all the answers

    Which mechanism allows vesicles to recognize the correct acceptor membrane?

    <p>Specific protein interactions between v-SNARE and t-SNARE.</p> Signup and view all the answers

    Which of the following statements about COPII-coated vesicles is true?

    <p>They facilitate the budding of vesicles from ER exit sites.</p> Signup and view all the answers

    What type of cells are mostly affected by peroxisomal disorders?

    <p>Nerve cells due to plasmalogen deficiencies.</p> Signup and view all the answers

    Which feature distinguishes late endosomes from early endosomes?

    <p>Late endosomes contain newly synthesized lysosomal enzymes.</p> Signup and view all the answers

    What is a common feature of lysosomal storage disorders?

    <p>They are generally caused by defects in lysosomal function.</p> Signup and view all the answers

    What is the primary function of regulated secretory vesicles?

    <p>To store their contents until directed for fusion</p> Signup and view all the answers

    Which proteins are carried to the plasma membrane by the constitutive secretory pathway?

    <p>New proteins and lipids for incorporation into the membrane</p> Signup and view all the answers

    What characterizes the transport of proteins in polarized cells?

    <p>Proteins must be retained within the Golgi complex</p> Signup and view all the answers

    What is NOT a function of the Golgi complex?

    <p>Degrading waste products in the cytoplasm</p> Signup and view all the answers

    Which statement about coats on transport vesicles is incorrect?

    <p>Coats ensure vesicles dock at inappropriate target membranes</p> Signup and view all the answers

    How are proteins targeted specifically to lysosomes?

    <p>By having specific signal sequences recognized during sorting</p> Signup and view all the answers

    What differentiates regulated secretory vesicles from other transport vesicles?

    <p>They store their contents until specific signals arrive</p> Signup and view all the answers

    What is required for the incorporation of new proteins and lipids into the plasma membrane?

    <p>A constitutive secretory pathway</p> Signup and view all the answers

    What is a characteristic of proteins retained within the Golgi complex?

    <p>They are associated with the Golgi membrane</p> Signup and view all the answers

    What does the unauthorized use of the contents of these slides lead to?

    <p>Full responsibility under existing laws</p> Signup and view all the answers

    Study Notes

    • Slides are the exclusive property of the instructor and/or third parties.
    • Reproduction, even partial, by any means (analog or digital) without consent is forbidden.
    • Unauthorized use is the full responsibility of the user.
    • Use for private study is permitted, but not for profit or commercial purposes.

    Cellular Biology I

    • Lorena Di Pietro is the instructor.
    • [email protected] is the instructor's email address.

    The Endomembrane System

    • This is a topic of study, likely a slide title.
    • Images/illustrations of cells are included (likely microscopy images).

    Golgi Complex - Functions (Protein Sorting)

    • Proteins are carried to the plasma membrane by a constitutive secretory pathway.
    • This pathway involves incorporating new proteins and lipids, and continuous secretion from the cell.
    • Other proteins are transported to the cell surface through a distinct pathway of regulated secretion, or may be targeted to other intracellular destinations (like lysosomes).

    Golgi Complex - Functions (Protein Sorting): Regulated Secretion

    • Regulated secretory vesicles are larger than other transport vesicles.
    • They store their contents, releasing them only with specific signals directing fusion with the plasma membrane.

    Golgi Complex - Functions (Protein Sorting): Proteins Within the Golgi

    • Proteins that function within the Golgi complex must be retained within that organelle.
    • These retained proteins are associated with the Golgi membrane rather than being soluble proteins within the lumen.

    Type of Transport Vesicles (Coated Vesicle Budding)

    • Transport vesicles have protein coatings that form to guide them.
    • Coats form through GTP-binding proteins, v-SNARE proteins, Membrane cargo proteins, Membrane cargo receptor proteins, and coat proteins.
    • Vesicles choose their specific cargo and dock at appropriate target membranes.
    • Many steps in vesicle transport rely on various GTP-binding proteins.

    Type of Transport Vesicles (General Characteristics)

    • Vesicles budding from intracellular membranes have a distinct two-layered protein "cage" coating their cytosolic surface.
    • Coating proteins are discarded before vesicles fuse with their target membrane to allow membrane interaction and fusion.

    Type of Transport Vesicles (Functions of Protein Coats)

    • Protein coats act as mechanical devices to curve membranes, causing vesicle budding (outer layer).
    • Specific components can be selected for transport (inner layer).
    • Coats mediate recognition and targeting to the correct acceptor membrane.

    Type of Transport Vesicles (Different Types Explained)

    • COPII-coated vesicles mediate anterograde transport (forward direction) from the ER through ERGIC to cis-Golgi.
    • COPI-coated vesicles mediate retrograde transport (backward direction) from ERGIC and Golgi back to ER and from trans-Golgi to cis-Golgi
    • Clathrin-coated vesicles move from TGN, endosome, and plasma membrane
    • Retromer-coated vesicles facilitate retrieval transport from endosome to Golgi apparatus

    Type of Transport Vesicles (Clathrin-Coated Vesicles)

    • Clathrin forms a structural scaffold (the outer layer) of the coating.
    • Different inner adaptors connect to different cargo receptors to select transported components.
    • Dynamin is a GTPase protein that pinches off clathrin-coated vesicles.

    Type of Transport Vesicles (Clathrin Triskelion structure)

    • Each clathrin subunit is composed of three heavy chains and three light chains forming a three-legged structure (triskelion).
    • Assembled clathrin triskelions create a basket-like network of hexagons and pentagons forming coated pits.

    Type of Transport Vesicles (COPII-Coated Vesicles)

    • COPII vesicles mediate the initial step of the ER-ERGIC-CGN path (forward transport).
    • Vesicle budding happens in specialized ER regions lacking bound ribosomes.
    • ER export signals on ER membrane proteins interact with COPII proteins to facilitate transport.

    Type of Transport Vesicles (COPI-Coated Vesicles)

    • Retrograde path for enzymes: Proteins residing in the ER have a retrieval signal (Lys-Asp-Glu-Leu).
    • This signal binds to the COPI coat, facilitating the proteins' return to the ER.
    • Transport components (inner & outer layers) are pre-assembled.

    Type of Transport Vesicles (Targeting to Specific Compartments - General Concepts)

    • Recognition for specific compartments is based on protein-protein interactions.
    • Specificity lies in the repertoire of proteins expressed on both membranes involved.
    • Interaction among membrane proteins facilitates docking and enables membrane fusion.

    Type of Transport Vesicles (Targeting to Specific Compartments - Tethering)

    • Vesicles tether to the target membrane through interactions among tethering proteins.
    • GTP-Rab proteins interact with the membrane through a lipid anchor.

    Type of Transport Vesicles (Targeting to Specific Compartments - Docking)

    • Vesicles dock to the target membrane through v-SNARE and t-SNARE protein interactions within the membrane proteins.

    Type of Transport Vesicles (Targeting to Specific Compartments - Docking - Fusion Pore Formation)

    • Membrane fusion (between vesicle and target) arises from v-SNARE and t-SNARE interaction.
    • Contact between membranes creates a fusion pore for fusion.

    Retromer Vesicles

    • Retromer is a distinct coat protein class, with no close sequence/structural resemblance to other coated vesicle proteins.
    • It's involved in cellular trafficking from endosomes to the TGN and plasma membrane.
    • Crucial for proper lysosome function, establishing Wnt gradients, maintaining metabolite homeostasis, and other cellular processes.
    • Defects in functions are tied to various human diseases.

    Cranio-lenticulo-sutural dysplasia (CLSD)

    • Autosomal recessive syndrome
    • Characterized by late-closing fontanels, sutural cataracts, facial dysmorphisms, and skeletal defects.
    • Due to mutations in the SEC23A gene, encoding a COPII protein.
    • Electron microscopy reveals dilated ER in fibroblasts and impaired vesicle budding.

    Lysosomes

    • Digestive organelles with diverse shapes and sizes.
    • Contain around 50 hydrolytic enzymes (acidic hydrolases), with a pH of 4.6.

    Lysosomes (Main Functions)

    • Digest material taken up from outside the cell.
    • Digest obsolete components of the cell itself (for reuse of materials or expulsion).

    Lysosomes (Material Digestion)

    • Lysosomes digest material from endocytosis, phagocytosis, and autophagy.

    Lysosomes - Endosomes

    • Lysosomes form by fusion of transport vesicles from the trans-Golgi network with endosomes.
    • Endosomes act as distribution centers in the endocytic pathway.
    • Endosomal lumen fluid is acidified by H+-ATPase in the membrane.

    Lysosomes - Endosomes (Early and Late)

    • Early endosomes are near the cell periphery and function as sorting stations.
    • Late endosomes are closer to the nucleus, receive newly synthesized lysosomal enzymes from the TGN, and exchange content with lysosomes.
    • Early endosomes mature into late endosomes.

    Autophagy

    • Degradation of organelles by enclosure in vesicles from ER that fuse with lysosomes.
    • This process involves identification and collection of cellular components for degradation.

    Lysosomal Storage Disorders

    • A group of inherited metabolic disorders linked to lysosomal dysfunction.
    • Prevalence around 1/8000 live births, with symptoms varying.
    • Disorders result from deficiencies in activators, enzymes, or transporters that lead to accumulation of waste products in lysosomes, often forming large vacuoles.

    Peroxisomes

    • Small, membrane-enclosed organelles.
    • Contain enzymes for diverse metabolic reactions, including energy metabolism.
    • Major sites of oxygen utilization, like mitochondria.

    Peroxisomes (Role in Oxidation & Hydrogen Peroxide)

    • Involved in oxidation reactions, generating hydrogen peroxide.
    • Contain catalase to break down hydrogen peroxide to water or use it to oxidize organic compounds (formic acid, formaldehyde, alcohol).

    Peroxisomes (Biosynthesis & Myelin)

    • Essential for animal peroxisome function in catalyzing the first reaction in plasmalogen synthesis (a major class of phospholipids in myelin).
    • Myelin is formed through extensive and modified plasma membrane wrappings around nerve axons.

    Peroxisomes (Protein Import & Replication)

    • Several distinct peroxins (Pex genes) participate in peroxisome protein import, a process powered by ATP hydrolysis.
    • Like mitochondria and plastids, peroxisomes can replicate themselves.

    Peroxisomal Disorders

    • Originate from defects in peroxisome functions.
    • Classified into peroxisome biogenesis disorders and single enzyme deficiencies.
    • Often feature profound abnormalities in the nervous system due to myelination problems, usually showing the most severe defects in the brain, liver, and kidney.

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    Explore the complexities of the endomembrane system in cellular biology, focusing on the Golgi complex and its role in protein sorting. This quiz will assess your understanding of the pathways involved in protein and lipid transport within the cell.

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