Podcast
Questions and Answers
What is the purpose of heating the solution to 95°C?
What is the purpose of heating the solution to 95°C?
- To allow primers to anneal
- To cool the reaction mixture
- To synthesize new DNA strands
- To denature the double helix (correct)
At what temperature should the solution be cooled to allow primers to anneal?
At what temperature should the solution be cooled to allow primers to anneal?
- 45°C
- 56°C (correct)
- 70°C
- 80°C
How many template strands are used in this procedure?
How many template strands are used in this procedure?
- 3
- 5
- 2
- 4 (correct)
Which of the following sequences is the correct representation of a DNA strand in this context?
Which of the following sequences is the correct representation of a DNA strand in this context?
What is the expected outcome after the cooling stage of the procedure?
What is the expected outcome after the cooling stage of the procedure?
What is the significance of independent assortment during meiosis?
What is the significance of independent assortment during meiosis?
Which alleles are involved in determining the colour phenotype according to the content?
Which alleles are involved in determining the colour phenotype according to the content?
How does the gene concept evolve according to the content?
How does the gene concept evolve according to the content?
What role does beta-galactosidase play in E. coli according to the content?
What role does beta-galactosidase play in E. coli according to the content?
What is a consequence of heritable phenotypic variation according to the content?
What is a consequence of heritable phenotypic variation according to the content?
In the context of genetic inheritance, what is meant by a mutant allele?
In the context of genetic inheritance, what is meant by a mutant allele?
Why is the concept of 'gene' considered elusive in the content provided?
Why is the concept of 'gene' considered elusive in the content provided?
What happens to polar bodies during meiosis as described in the content?
What happens to polar bodies during meiosis as described in the content?
What is the role of the promoter in a gene cassette?
What is the role of the promoter in a gene cassette?
Which promoter is most commonly used in genetically modified crops?
Which promoter is most commonly used in genetically modified crops?
What does the NOS terminator derive from?
What does the NOS terminator derive from?
Why can closely related organisms have more similar DNA sequences?
Why can closely related organisms have more similar DNA sequences?
Which process is necessary to visualize DNA sequences?
Which process is necessary to visualize DNA sequences?
What components are essential within a gene cassette?
What components are essential within a gene cassette?
What is the base sequence of DNA that runs from 3’ to 5’ in the provided example?
What is the base sequence of DNA that runs from 3’ to 5’ in the provided example?
Which statement is true about DNA molecules?
Which statement is true about DNA molecules?
What is required to ligate free dinucleotide triphosphate molecules to the 3' end of primers?
What is required to ligate free dinucleotide triphosphate molecules to the 3' end of primers?
At what temperature does the polymerase enzyme optimally extend the primers?
At what temperature does the polymerase enzyme optimally extend the primers?
Which polymerase enzyme is commonly used in the ligation of free dinucleotide triphosphate molecules?
Which polymerase enzyme is commonly used in the ligation of free dinucleotide triphosphate molecules?
How many newly synthesized complementary strands are produced at the end of the cycle described?
How many newly synthesized complementary strands are produced at the end of the cycle described?
Which of the following statements about the sequence is true?
Which of the following statements about the sequence is true?
In the context of DNA synthesis, what is the significance of dATP, dGTP, dCTP, and dTTP?
In the context of DNA synthesis, what is the significance of dATP, dGTP, dCTP, and dTTP?
What is the role of the polymerase enzyme during the ligation process?
What is the role of the polymerase enzyme during the ligation process?
Which of the following represents a common misconception about the temperature required for polymerase function?
Which of the following represents a common misconception about the temperature required for polymerase function?
What is the primary purpose of meiosis in diploid organisms?
What is the primary purpose of meiosis in diploid organisms?
What happens to homologous chromosomes during meiosis?
What happens to homologous chromosomes during meiosis?
What is crossing over and when does it occur?
What is crossing over and when does it occur?
What is the relationship between sister chromatids and homologous chromosomes?
What is the relationship between sister chromatids and homologous chromosomes?
During which phase of meiosis does the independent assortment of chromosomes primarily occur?
During which phase of meiosis does the independent assortment of chromosomes primarily occur?
How does the genetic diversity in offspring arise during meiosis?
How does the genetic diversity in offspring arise during meiosis?
What occurs during the chiasmata formation in meiosis?
What occurs during the chiasmata formation in meiosis?
Which statement is true regarding the chromosome number in daughter cells after meiosis?
Which statement is true regarding the chromosome number in daughter cells after meiosis?
What is the first step in optimizing the temperature for the polymerase enzyme during PCR?
What is the first step in optimizing the temperature for the polymerase enzyme during PCR?
How does the amount of DNA sequences between primers change with each cycle of PCR?
How does the amount of DNA sequences between primers change with each cycle of PCR?
What is the direction of the first DNA strand provided in the sequence?
What is the direction of the first DNA strand provided in the sequence?
What is the purpose of the polymerase enzyme in PCR?
What is the purpose of the polymerase enzyme in PCR?
What does the sequence '3’ – GCTAGACTATACGGATAGGACCCATAGACAGATTACAGATGGCAGATTGACATAGTTAAGTTGACAGACGACAGACGTTAAGTAGACAACACAGTTAGATAGGACAGACAGA – 5’’ indicate?
What does the sequence '3’ – GCTAGACTATACGGATAGGACCCATAGACAGATTACAGATGGCAGATTGACATAGTTAAGTTGACAGACGACAGACGTTAAGTAGACAACACAGTTAGATAGGACAGACAGA – 5’’ indicate?
Which part of the DNA sequences is critical for initiating DNA synthesis during PCR?
Which part of the DNA sequences is critical for initiating DNA synthesis during PCR?
Which sequence indicates the correct orientation for a double-stranded DNA?
Which sequence indicates the correct orientation for a double-stranded DNA?
In what stage of PCR does the actual synthesis of new DNA occur?
In what stage of PCR does the actual synthesis of new DNA occur?
What is the role of the primer in the PCR process?
What is the role of the primer in the PCR process?
What occurs to the DNA strands during denaturation in PCR?
What occurs to the DNA strands during denaturation in PCR?
Flashcards
Heat denaturation
Heat denaturation
A process of separating two DNA strands, using high temperature to break hydrogen bonds between base pairs.
Primer annealing
Primer annealing
The process of short, single-stranded DNA sequences (called primers) binding to complementary regions on the DNA strands.
DNA synthesis
DNA synthesis
The stage where a new DNA strand is synthesized, using the original strand as a template, by adding nucleotides to the primer.
Polymerase chain reaction (PCR)
Polymerase chain reaction (PCR)
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PCR cycle
PCR cycle
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Meiosis Diagram
Meiosis Diagram
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Primer
Primer
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Homologous Chromosomes
Homologous Chromosomes
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Taq polymerase
Taq polymerase
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Alleles
Alleles
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Independent Assortment of Chromosomes
Independent Assortment of Chromosomes
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Denaturation
Denaturation
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Annealing
Annealing
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Genotype
Genotype
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Extension
Extension
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Phenotype
Phenotype
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PCR (Polymerase Chain Reaction)
PCR (Polymerase Chain Reaction)
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Mutation
Mutation
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Gene Expression
Gene Expression
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Target DNA
Target DNA
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Meiosis
Meiosis
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Crossing over
Crossing over
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Chromatid
Chromatid
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Diploid
Diploid
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Haploid
Haploid
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Sexual reproduction
Sexual reproduction
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Gene Cassette
Gene Cassette
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CaMV35S Promoter
CaMV35S Promoter
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NOS Terminator
NOS Terminator
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Transgene
Transgene
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DNA Sequence Comparison
DNA Sequence Comparison
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DNA Visualization
DNA Visualization
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DNA Preparation
DNA Preparation
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Annealing Temperature
Annealing Temperature
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Warm up to 72°C
Warm up to 72°C
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Exponential Amplification
Exponential Amplification
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DNA Amplification
DNA Amplification
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Applications of PCR
Applications of PCR
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Study Notes
BY450 Fundamentals of Genetics & Evolution - Lecture 3
- Lecture is about genes and genomes.
The Human Genome
- Human genome contains 23 pairs of chromosomes.
- 3,000,000,000 base pairs (bps).
- XY for males, XX for females.
- Coding DNA only accounts for approximately 1.5% of the total DNA.
- Non-coding DNA, comprising ~ 98.5%, includes functionally vital elements like enhancers and promoters, as well as RNA-producing genes (e.g., ribosomal and transfer RNA).
Eukaryotic Genes
- A eukaryotic gene comprises coding segments (exons) separated by non-coding segments (introns).
- RNA splicing removes introns; spliceosomes and small nuclear RNAs accomplish this.
- Some protein-coding genes have a single exon that isn't spliced.
Meiosis
- Meiosis is essential for maintaining diploid organisms.
- Chromosome pairs are sorted before creating daughter cells (gametes) that have a complete haploid component of the genome.
- Meiosis results in genetically distinct gametes by separating homologous chromosomes.
Gene "Units" and Inheritance
- Genes are inherited units impacting phenotype (observable characteristics like flower colour).
- Genes have various alleles (e.g., R and r for flower colour), resulting in different genotypes leading to distinct phenotypes.
Gene Expression
- Gene expression involves a gene's activity in a cell, producing a particular product like protein.
- Bacterium E. coli illustrates this using the lacZ gene as an example. It produces the enzyme beta-galactosidase only when lactose is present, regulated by a repressor protein that prevents gene expression.
- If lactose is present, repressor protein detachment permits beta-galactosidase expression.
Gene Expression - Regulation and Mutation
- Mutations in gene expression or regulatory pathways affect phenotypic traits.
- Mutations include alterations in expression, coding, or mutation type.
Genetically Modified Organisms (GMOs)
- GMOs contain inserted genes from other organisms using biological vectors.
- The inserted gene, called a 'transgene', requires a promoter and terminator for proper operation in the new organism.
- Common elements include the CaMV35S promoter and the NOS terminator.
Polymerase Chain Reaction (PCR)
- PCR is a laboratory technique amplifying DNA segments.
- Initial steps involve heating to denature DNA and cooling to anneal primers to specific DNA segments.
- Amplification involves repeated cycles of heating and cooling in combination with DNA polymerase and necessary nucleotides.
- Cycles of amplification lead to exponential DNA increase.
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