BIOS 3450 Unit 2 Practice Quiz

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Questions and Answers

How does EF-Tu enhance accuracy during translation?

  • It prevents aminoacyl-tRNA synthetase from attaching the incorrect amino acid.
  • It removes an incorrectly matched tRNA from the A site of the ribosome. (correct)
  • It binds to peptidyl transferase to inhibit peptide bond formation.
  • It changes the conformation of the small ribosomal subunit.

Using the genetic code table as reference, which of the following mutations is most likely to be detrimental?

  • A UCU codon mutates to UCA.
  • An AAA codon is deleted.
  • A UGG codon mutates to UGA. (correct)
  • A UUC codon mutates to UUA.

What consensus sequence(s) must an intron have for the spliceosome to recognize it for removal?

  • 3' splice site.
  • 5' splice site.
  • Adenine branch point.
  • All of the above are required. (correct)

If you place a fluorescent signal on a ribosome participating in translation within a eukaryotic cell, where would you expect to observe the fluorescence?

<p>Endoplasmic Reticulum. (A)</p> Signup and view all the answers

What is the function of aminoacyl-tRNA synthetase?

<p>Catalyzes the addition of an amino acid to a tRNA. (D)</p> Signup and view all the answers

Which of the following is a pump that hydrolyzes two ATP molecules per transport cycle?

<p>MDR protein (ABC transporter) (A)</p> Signup and view all the answers

How does the CFTR protein differ from most other ABC transporters?

<p>Unlike most ABC transporters, CFTR functions primarily as an ion channel rather than an active transporter. (B)</p> Signup and view all the answers

The Na+/K+ pump transports Na+ ions _______ their electrochemical gradient out of the cell and transports 2K+ _______ into the cell.

<p>3; against their electrochemical gradient; against their electrochemical gradient (B)</p> Signup and view all the answers

Which of the depicted transporters mediates primary active transport, assuming the concentration of both solutes is higher outside the cell?

<p>E (A)</p> Signup and view all the answers

Which of the following is NOT part of the initiation complex of translation?

<p>DNA (B)</p> Signup and view all the answers

TFIID is a crucial component of the transcription initiation complex. Which of the following describes its function?

<p>TFIID binds to the TATA box in the promoter region of DNA (D)</p> Signup and view all the answers

A template strand of DNA has the sequence 5'-GCCTACTG-3'. What is the sequence of the complementary RNA strand?

<p>5' CAGTAGGC 3' (D)</p> Signup and view all the answers

In cystic fibrosis, digestive enzymes cannot effectively reach the small intestine due to:

<p>Thick mucous secretions in the pancreas (C)</p> Signup and view all the answers

What is the chemical nature of the 5' cap found on eukaryotic mRNA molecules?

<p>Protein (B)</p> Signup and view all the answers

Which protein facilitates communication between activator proteins, general transcription factors, and RNA polymerase II during transcription?

<p>Mediator (C)</p> Signup and view all the answers

Which of the following is a key difference between RNA and DNA?

<p>RNA is typically single-stranded and can adopt complex 3D structures. (A)</p> Signup and view all the answers

What is the correct order of events that must occur within the nucleus before a eukaryotic mRNA can be exported to the cytoplasm?

<p>Addition of a 5' cap, polyadenylation at the 3' end, ribosome binding (D)</p> Signup and view all the answers

Given the following mRNA sequence, 5'-GUUUCCUUAUAUGCUAGCCGCGCGGGGGGCC-3', which codon is recognized by the initiator tRNA during translation initiation?

<p>5'-AUG-3' (A)</p> Signup and view all the answers

Consider the mRNA fragment 5'-GUUUCCUUAUAUGCUAGCCGCGCGGGGGGCC-3'. After the initiator tRNA binds, what amino acid will be brought in by the next tRNA to bind to the ribosome's A site?

<p>Serine (Ser) (B)</p> Signup and view all the answers

During translation initiation, which of the following components is responsible for initially binding the mRNA and scanning for the start codon?

<p>Small ribosomal subunit (D)</p> Signup and view all the answers

Within eukaryotic genes, what is the primary reason that intron sequences are not found in the final translated protein?

<p>Introns are removed from pre-mRNA by the spliceosome. (D)</p> Signup and view all the answers

Which of the following statements accurately describes the redundancy of the genetic code?

<p>Multiple codons can specify the same amino acid. (D)</p> Signup and view all the answers

EF-Tu is crucial for accurate and efficient protein translation. Given a correct codon-anticodon match, what is the correct sequence of events?

<p>rRNA closure -&gt; Conformational change -&gt; GTP hydrolysis -&gt; EF-Tu release (A)</p> Signup and view all the answers

In eukaryotes, the coordinated processing of the transcript is mediated by what structural feature of RNA polymerase II?

<p>C-terminal domain tail (C)</p> Signup and view all the answers

A newly charged tRNA is unable to bind to the ribosome. Which of the following is most likely the reason for this?

<p>The ribosome has a damaged A site. (B)</p> Signup and view all the answers

Which of the following statements accurately describes the function of TFIID in transcription initiation?

<p>TFIID binds to the TATA box within the promoter of DNA. (C)</p> Signup and view all the answers

How does the 5' cap on eukaryotic mRNA transcripts protect them from degradation?

<p>By creating a 5'-5' phosphodiester linkage that resists exonuclease digestion (C)</p> Signup and view all the answers

Which of the following mechanisms would generally lead to a decrease in the expression of a gene?

<p>Methylation of a CpG island in the gene's promoter. (B)</p> Signup and view all the answers

During translation, if the mRNA is read from 5' to 3', in which direction is the polypeptide chain synthesized?

<p>5' to 3'; N-terminus to C-terminus (C)</p> Signup and view all the answers

Which statement is NOT true about the modifications done before export of mRNA out of the nucleus?

<p>Poly A polymerase adds Adenine (A) using a template strand (C)</p> Signup and view all the answers

Flashcards

EF-Tu's Role in Translation Accuracy

EF-Tu ensures accuracy by removing incorrectly matched tRNA from the A site of the ribosome during translation.

UGG to UGA Mutation

A mutation from UGG (tryptophan) to UGA (stop codon) is detrimental because it prematurely terminates protein synthesis.

Intron Recognition by Spliceosome

The spliceosome requires 3', 5' splice sites and an adenine branch point to recognize and remove introns from pre-mRNA.

Ribosome Location in Eukaryotic Cells

During translation, ribosomes are found in the Endoplasmic Reticulum in eukaryotic cells.

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Function of Aminoacyl-tRNA Synthetase

Aminoacyl-tRNA synthetase catalyzes the attachment of a specific amino acid to its corresponding tRNA molecule.

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Pumps requiring two ATP

MDR protein (ABC transporter) uses two ATP molecules per transport cycle.

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CFTR protein function vs ABC transporters

CFTR protein does not function as an active transporter, but primarily as an ion channel.

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Ions transported by Na+/K+ pump

The Na+/K+ pump transports 3 Na+ ions out and 2 K+ ions into the cell against their electrochemical gradients.

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Function of TFIID

The protein TFIID binds to the TATA box in the promoter region of DNA to initiate transcription.

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Complementary RNA Strand

The complementary RNA strand for the DNA template strand 5'-GCCTACTG-3' is 5'-CAGUAGGC-3'.

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Enzyme Blockage in Cystic Fibrosis

In cystic fibrosis, thick mucus secretions in the lungs prevent digestive enzymes from reaching the small intestine.

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Function of Mediator

Mediator allows proper communication between activator and general transcription factors, and RNA Pol II.

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Conformation change after ATP hydrolysis

After the sodium-potassium pump hydrolyzes ATP, the pump changes conformation.

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Protein differences

All of the proteins found in a neuron are completely different from the proteins found in a white blood cell.

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Damaged attachment site

Damaged P site is a reason new tRNA can't bind to the ribosome complex.

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RNA vs. DNA Structure

RNA is typically single-stranded and can fold into complex 3D structures, unlike the double helix of DNA.

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mRNA Export Requirement

Ribosome binding does not occur until after the mRNA has been exported from the nucleus.

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Initiation Codon

The small ribosomal subunit scans the mRNA for the start codon AUG.

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EF-Tu and GTP hydrolysis

The hydrolysis GTP on EF-Tu bound to the tRNA causes EF-Tu to release the tRNA (with amino acid) so it can now be used in protein synthesis.

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RNA Polymerase II CTD

The C-terminal domain tail (CTD) of RNA polymerase II coordinates RNA processing events (capping, splicing, polyadenylation) with transcription elongation.

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mRNA Cap Protection

The modified guanine cap resists exonuclease digestion due to the unusual 5'-5' phosphodiester linkage.

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CpG Island Methylation Effect

Methylation of a CpG island in the promoter of a gene typically decreases gene expression. Methylation acts as tag.

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mRNA Reading Direction

In the ribosome, mRNA is read 5' to 3', and the polypeptide chain is synthesized from the N-terminus to the C-terminus.

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Poly A Tail Function

The poly A tail is NOT used to set the reading frame of the mRNA. The reading frame is defined by the start codon.

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Intron Lariat Formation

During splicing, the intron sequence forms a lariat structure. The 5' end of the intron attaches to a branch point within the intron.

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Spliceosome Catalysis

snRNA forms the catalytic site for splicing reactions within the spliceosome. It catalyzes the transesterification reactions.

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RNA Polymerase II

RNA polymerase II adds nucleotides to the 3’ end of the growing RNA strand, not the 5’.

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Cell-Specific Gene Expression

For a gene expressed only in certain cell types, the regulatory transcription factor that binds the enhancer is expressed only in those cell types.

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Peptidyl Transfer

During the translation of a polypeptide, the carboxyl end of the polypeptide chain is released from the P-site tRNA and joined to the free amino group of the amino acid linked to the A-site tRNA.

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Aquaporin selectivity

Two Asparagines in the center of the pore prevent protons from passing through the channel.

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Study Notes

  • Madeline Alissa Murdock took the BIOS 3450 Unit 2 Practice Quiz SP25 and received a score of 72.28 / 100 points.

Question 1

  • EF-Tu promotes accuracy in translation by removing incorrectly matched tRNA from the A site of the ribosome.

Question 2

  • Mutating a UGG codon to a UGA codon would be the most detrimental scenario.

Question 3

  • For the spliceosome to recognize an intron for removal, the intron must have a 3' splice site, an Adenine branch point and a 5' splice site.

Question 4

  • A fluorescent signal placed on a ribosome partaking in translation is expected to be seen in the Endoplasmic Reticulum in a eukaryotic cell.

Question 5

  • Aminoacyl-tRNA synthetase catalyzes the addition of an amino acid to a tRNA.

Question 6

  • MDR protein (ABC transporter) pump hydrolyzes two ATP molecules per transport cycle.

Question 7

  • The Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) protein functions primarily as an ion channel rather than as an active transporter, unlike most ABC transporters.

Question 8

  • The Na+ K+ pump transports 3 Na+ ions against their electrochemical gradient out of the cell
  • The pump transports 2K+ against their electrochemical gradient into the cell.

Question 9

  • Transporter E mediates primary active transport when transporting solutes in the directions indicated.

Question 10

  • DNA is not part of the initiation complex of translation.
  • RNA in cells is single-stranded
  • RNA folds into a variety of structures
  • RNA contains the base uracil
  • RNA contains the sugar ribose

Question 11

  • TFIID binds to the TATA box in the promoter region of DNA.

Question 12

  • If the template strand of DNA has the sequence 5’GCCTACTG 3', the complementary RNA strand is 5' CAGUAGGC 3'.

Question 13

  • Digestive enzymes are not able to get to the small intestine as a direct result of thick mucous secretions in the lung in cystic fibrosis

Question 14

  • The 5' cap of a mRNA is a nucleotide.

Question 15

  • The mediator allows proper communication between activator and general transcription factors and RNA Pol II.

Question 16

  • The Na+-K+ ATPase, also known as the Na+-K+ pump, maintains high extracellular sodium and high intracellular potassium ion concentrations.
  • Immediately after the pump hydrolyzes ATP, the pump changes conformation.

Question 17

  • Neurons and white blood cells have different functions because all of the proteins found in a neuron are completely different from the proteins found in a white blood cell

Question 18

  • If a new tRNA with an attached amino acid (AA #4) is unable to bind to the ribosome complex, a reason for this could be it has a damaged P site.
  • Before a eukaryotic mRNA is exported from the nucleus, the ribosome does not bind to the mRNA
  • In the initiation phase of translation, the small ribosomal subunit searches for the 5'-AUG-3' codon on the mRNA
  • Arginine will be on the tRNA that is the first to bind to the A site of the ribosome
  • Intronic sequences are removed from RNA molecules by the spliceosome
  • The genetic code is redundant
  • The correct order, starting with a correct anticodon-codon match is:
    • The rRNA (in the ribosome) closes tightly around the codon-anticodon match
    • Conformational change in the ribosome
    • GTP hydrolysis is triggered in EF-Tu
    • EF-Tu releases tRNA (with amino acid) so it can now be used in protein synthesis
  • The C-terminal domain tail mediates the tight coupling between transcription elongation and RNA processing events
  • A damaged A site could be a reason for a new tRNA with an attached amino acid (AA-tRNA) being unable to bind to the ribosome complex
  • TFIID binds to the TATA box on the promoter of DNA
  • The modified guanine nucleotide cap protects mRNA transcripts from digestion because it resists digestion from exonuclease due to 5'-5' phosphodiester linkage
  • Methylation of a CpG island in the promoter of a gene would decrease the expression of a gene
  • On the ribosome, the mRNA is read from 5' to 3' and the polypeptide chain is synthesized from N-terminus to C-terminus
  • It is incorrect to say that the Poly A tail is used to set the reading frame of the mRNA during translation
  • The intron forms the lariat; the 5' end is attached internally during pre-mRNA splicing
  • The spliceosome is unique because the catalytic site for splicing reactions is snRNA
  • The complementary RNA strand to the DNA template strand sequence 5'-CCG TAG ACA-3' is 5'-UGU CUA CGG-3'
  • A nucleosome consist of DNA wrapped around a histone protein
  • It is incorrect to say that the RNA Polymerase II adds nucleotides to the 5' end of growing RNA strand
  • The regulatory transcription factor that binds to the enhancer of the gene determines gene expression in certain cell types
  • The carboxyl end of the polypeptide chain is released from the P-site tRNA and joined to the free amino group of the amino acid linked to the A-site tRNA during elongation
  • The Ca2+ ATPase in the Sarcoplasmic Reticulum moves Ca2+ ions from the cytosol to the sarcoplasmic reticulum lumen
  • A silent mutation will not affect the resulting protein because the amino acid encoded remains the same
  • In translation termination, stop codons are recognized by a terminating tRNA molecule
  • A mutation in CFTR protein in lung epithelial cells prevents both Cl- ions and water from leaving lung epithelial cells causing thick mucus buildup outside cells
  • Light is required to activate channelrhodopsins
  • From high to low permeability: CO2, water, glucose, Na+
  • Inactivation of voltage-gated Na+ channels is chiefly responsible for the limit of a neuron's repetitive firing rate
  • Channel proteins in cellular membranes can only mediate passive transport
  • It is incorrect to say that voltage-gated sodium ion channels are open during the repolarization phase of the action potential
  • Glucose transport across intestinal cells would decrease if a drug inhibits Na+/K+ pump on the basal side of intestinal epithelial cells
  • The pump transports three Na+ ions against their electrochemical gradient into the cell and transports two K+ ions against their electrochemical gradient out of the cell is incorrect regarding the Na+/K+ pump.
  • DNP collapses the proton gradient by equalizing proton concentrations as an uncoupler to inhibit ATP synthesis
  • V type pumps are responsible for the acidification of lysosomes
  • Two Asparagines in the center of the pore prevent protons from passing through the channel in aquaporins
  • A conformational change causes Ca2+ ions to aggregate in the Sarcoplasmic Reticulum lumen after the Ca²+ pump is in its ATP-bound, phosphorylated state
  • Less salt is reabsorbed from sweat into sweat glands in persons with Cystic Fibrosis, is the reason a sweat test is used in diagnosing it
  • Hyperpolarization is when the potential across an axon membrane is more negative than the normal resting potential
  • In a Na+-driven glucose transporter:
    • Na+ gradient drives the movement of glucose against its concentration gradient
    • Binding of Na+ and glucose is cooperative
  • This drug helps the CFTR protein reach the plasma membrane in order to function is true about Trikafta
  • Most multipass membrane proteins in eukaryotic cells are made from transmembrane alpha helices
  • The helices can slide past each other, allowing conformational changes in the protein that can open channels or transport solutes.
  • Sanshool elevates the resting potential (to less negative values) and makes it easier to excite the neuron
  • If peptidyl transferase is rendered non-functional due to a drug, then would Peptide bond formation is impaired
  • Hâ‚‚O diffuses in faster than glucose of sodium across a membrane

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