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Biomolecules: Chemistry Foundation

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69 Questions

What is a characteristic of proteins?

High molecular masses expressed in kDa

What is the general term for carbohydrates that are covalently bonded to other biomolecules?

Bioconjugates

What is the general term for lipids that show a dual nature with hydrophilic and lipophilic parts?

Amphiphilic lipids

What is the building block of nucleic acids?

Nucleotides

What is the term for lipids that are derived from phosphoric acids and esterified with fatty acids?

Phospholipids

What is the term used to describe the building blocks of larger molecules called polymers?

Monomers

Which of the following is an example of a polymer?

Polysaccharide

What is the term used to describe the study of the qualitative and quantitative analysis of biological activity and detection of biological molecules?

BioAnalytical Chemistry

Which of the following biomolecules includes lipids and derivatives?

Small molecules

What is the term used to describe the nitrogen-containing ring structure found in nucleotides?

Nitrogenous base

What is the primary function of insoluble carbohydrate polymers in cell walls?

To serve as structural and protective elements

What is the main difference between RNA and DNA in terms of stability?

DNA is more stable than RNA

What type of molecules are formed when carbohydrate polymers are covalently attached to proteins or lipids?

Glycoproteins

What comprises the lipophilic fraction of a biological sample?

Triglycerides, fatty acids, alcohols, sterols, and fat-soluble vitamins

What is the purpose of carbohydrate polymers in lubricating skeletal joints?

To reduce friction between moving joints

What is the process by which polysaccharides, nucleic acids, and proteins are formed?

Polymerization

What is the molecular weight of the monomers that make up macromolecules?

500 or less Da

What type of bond links amino acids together in proteins?

Peptide bond

What is the term for the complex formed by the assembly of macromolecules?

Supramolecular complex

What is the term for the end of a polypeptide chain?

C-terminal

What is the primary purpose of quenching metabolism in metabolomics?

To stop or slow down the metabolic process

Approximately what percentage of total dry mass in cells are proteins?

50%

What is the estimated number of different proteins in the human body?

100,000

What is the process that converts CO2 and H2O into cellulose and other plant products?

Photosynthesis

What is the term that describes the study of small molecules or metabolites within a biological sample?

Metabolomics

What is the primary source of carbohydrates in nature?

Plant products

What is the ratio of proteins to other macromolecules in cells?

5:1

What is the term that describes the extraction of metabolites from a biological sample?

Extraction

What is the importance of stopping or slowing down metabolism in highly metabolically active systems?

To prevent sample degradation

What percentage of the hemoglobin molecule's mass is made up of iron ions?

0.3%

What are the building blocks of DNA?

Nucleotides

What is the typical molecular weight range of small biomolecules in cells?

100 to 500 Da

Which of the following biomolecules are often polyfunctional, containing two or more different kinds of functional groups?

Many biomolecules

What is the term for large biomolecules composed of simpler subunits?

Macromolecules

What is the name of the biomolecule that is a carrier of acetyl groups in some enzymatic reactions?

Acetyl-CoA

What are the four major classes of biomolecules that are important for all living things?

Carbohydrates, lipids, proteins, and nucleic acids

What is the concentration range of small biomolecules in cells?

μmol to mmol

What is the characteristic of biomolecules in the aqueous phase of cells?

Polar or charged and water-soluble

What is the result of replacing hydrogen atoms with functional groups in hydrocarbons?

An increase in the variety of organic compounds

What is the main cause of denaturation of proteins?

pH changes, mercaptoethanol, detergents, urea/guanidine and heat

What is the term for the structure that conserves a native-like secondary structure content but without the tightly packed protein interior?

Molten globule

What is the reason why proline creates a bend in an α-helix?

All of the above

What is the type of protein structure that describes the completely folded and compacted polypeptide chain?

Tertiary (3°) structure

What is the function of molecular chaperones?

To restore proteins that have become misfolded

What is the type of protein that contains polypeptide chains organized approximately parallel along a single axis?

Fibrous protein

What is the result of heat-induced denaturation of proteins?

Exposure of non-polar segments to aqueous solvent

What is the term for the association of polypeptide chains?

Quaternary (4°) structure

What is the driving force behind the hydrophobic effect?

Decrease in entropy in water

What is the location of hydrophobic residues in globular proteins?

Inside the protein

What is the role of 2,3-BPG in hemoglobin?

Decreases the affinity of hemoglobin for oxygen

What is the role of chaperones in protein folding?

To guide misfolded regions back into place

What is the difference between myoglobin and hemoglobin?

Myoglobin binds 1 O2 molecule, while hemoglobin binds 4 O2 molecules

What is the consequence of protein misfolding?

Loss of biological activity

What is the purpose of hydrogen bonding in the β-pleated sheet?

To form a sheet-like structure

What is the term for the change in direction of a polypeptide chain?

β-Reverse turn

What is the effect of pH changes on proteins?

Denaturation of proteins

What is the characteristic of globular proteins?

They are soluble in water and have a spherical shape

What is the function of cryo-electron microscopy?

To study the structure of proteins using complex computational processing algorithms

What is the term for the non-covalent interactions that stabilize the tertiary structure of a protein?

Hydrogen bonds, electrostatic interactions, and hydrophobic interactions

What is the 1° structure of a protein?

The sequence of amino acids in a polypeptide chain

What type of bond is responsible for the formation of α-helices in proteins?

Hydrogen bond

What is the characteristic of the R groups of amino acids in an α-helix?

They stick outward from the α-helix

What is the distance between each turn of the α-helix?

5.4 Å

What is the number of amino acids per turn in an α-helix?

3.6

What type of structure is formed by a regular pattern of hydrogen bonds between the amide N-H and C=O groups of amino acids?

α-helix

Which bonds have free rotation in a protein?

Both of the above

What is the direction of the hydrogen bonds in an α-helix?

Parallel to the axis

What is the role of hydrogen bonds in the formation of an α-helix?

They pull the polypeptide chain into a helical structure

What is the sequence of amino acids in a polypeptide chain read from?

N-terminal end to C-terminal end

Learn about the basic characteristics of proteins, polysaccharides, and other biomolecules, including their molecular masses, isoelectric points, and bonding properties. Understand the foundation of biochemistry and how these molecules constitute cells.

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