Biology Chapter on Transcription and DNA Replication

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Questions and Answers

What is the role of a promoter in the transcription process?

  • To synthesize the RNA molecule.
  • To help RNA polymerase detach from DNA.
  • To signal the start of the transcription process. (correct)
  • To degrade RNA after transcription.

During which phase of transcription does the RNA polymerase attach to the DNA?

  • Elongation phase.
  • Termination phase.
  • Initiation phase. (correct)
  • Post-transcription phase.

What signals the end of the transcription process?

  • The mRNA maturation.
  • The RNA polymerase detachment.
  • The terminator sequence. (correct)
  • The promoter sequence.

Which enzyme is responsible for synthesizing RNA during transcription?

<p>RNA polymerase. (C)</p> Signup and view all the answers

What is the first step in transcription referred to as?

<p>Initiation. (D)</p> Signup and view all the answers

What is the primary function of DNA during cell reproduction?

<p>To duplicate and provide genetic information to daughter cells (B)</p> Signup and view all the answers

What role do origins of replication play in DNA replication?

<p>They initiate the replication process at multiple sites simultaneously (B)</p> Signup and view all the answers

Which model proposed by Watson and Crick aids in understanding DNA function?

<p>The double helix model (D)</p> Signup and view all the answers

Why is it important for a cell to have a means of copying its DNA?

<p>To pass genetic information accurately to daughter cells (C)</p> Signup and view all the answers

What is the result of having multiple origins of replication in a DNA molecule?

<p>Shortened overall time required for DNA replication (B)</p> Signup and view all the answers

What is meant by 'daughter DNA molecules' in the context of replication?

<p>Newly formed DNA that results from the replication process (D)</p> Signup and view all the answers

What structural feature of eukaryotic chromosomes is essential for effective DNA replication?

<p>The presence of multiple replication origins (C)</p> Signup and view all the answers

What happens to a cell's DNA during reproduction?

<p>It duplicates to provide one copy for each new cell (B)</p> Signup and view all the answers

What can be visualized as a long ladder in the structure of a DNA polynucleotide?

<p>Nitrogenous bases (A)</p> Signup and view all the answers

Which of the following correctly describes a DNA nucleotide?

<p>Made of sugar, phosphate group, and nitrogenous base (A)</p> Signup and view all the answers

Which component of DNA is responsible for its stability and structure?

<p>Phosphate group (C)</p> Signup and view all the answers

Which of the following pairs is not correctly matched in complementary base pairing?

<p>Guanine (G) - Adenine (A) (B)</p> Signup and view all the answers

In the structure of a DNA double helix, how are the two strands held together?

<p>Hydrogen bonds between nitrogenous bases (C)</p> Signup and view all the answers

What type of bond connects the phosphate group to the sugar in a DNA nucleotide?

<p>Phosphodiester bond (B)</p> Signup and view all the answers

Which nitrogenous base is unique to DNA and not found in RNA?

<p>Thymine (T) (C)</p> Signup and view all the answers

Which part of the DNA polynucleotide structure is hydrophilic?

<p>Phosphate group (B)</p> Signup and view all the answers

What structural feature differentiates RNA from DNA?

<p>RNA is always single-stranded (D)</p> Signup and view all the answers

During DNA replication, which enzyme is primarily responsible for unwinding the double helix?

<p>Helicase (A)</p> Signup and view all the answers

What do the sugar-phosphate backbones represent in the DNA structure?

<p>The structural framework (D)</p> Signup and view all the answers

Which of the following statements about DNA base pairing is true?

<p>A pairs with T and C pairs with G (B)</p> Signup and view all the answers

What is the significance of Watson, Crick, and Wilkins receiving the Nobel Prize in 1962?

<p>They described the double helix structure of DNA (B)</p> Signup and view all the answers

What role does a DNA polymerase play in DNA replication?

<p>It adds nucleotides to the growing daughter strand (C)</p> Signup and view all the answers

What does the term 'complementary shapes' refer to in the context of DNA bases?

<p>The specific pairing of nucleotide bases (C)</p> Signup and view all the answers

What characteristic of DNA replication is noted for its speed and accuracy?

<p>50 nucleotides per second at greater than 99.999% accuracy (A)</p> Signup and view all the answers

Why was Franklin not awarded the Nobel Prize for her contributions to DNA research?

<p>She died before the prize was awarded (B)</p> Signup and view all the answers

What do the terms 'parental' and 'daughter' refer to in the context of DNA?

<p>Strands of DNA before and after replication (D)</p> Signup and view all the answers

What is the first phase of translation called?

<p>Initiation (D)</p> Signup and view all the answers

During which phase does the polypeptide chain grow by one amino acid?

<p>Elongation (B)</p> Signup and view all the answers

In the elongation process, what happens to the polypeptide attached to the tRNA in the P site?

<p>It binds to the amino acid on the tRNA in the A site. (A)</p> Signup and view all the answers

What role do the cap and tail of mRNA play in translation?

<p>They help the mRNA bind to the ribosome. (D)</p> Signup and view all the answers

Which site of the ribosome is the location where the incoming tRNA pairs with the mRNA codon?

<p>A site (D)</p> Signup and view all the answers

What happens to the tRNA in the P site after the peptide bond is formed?

<p>It leaves the ribosome. (C)</p> Signup and view all the answers

What is the purpose of the mRNA molecule being longer than the genetic message it carries?

<p>To allow for multiple rounds of ribosome binding. (B)</p> Signup and view all the answers

Which of the following correctly describes the function of the ribosome during translation?

<p>It catalyzes the formation of peptide bonds. (A)</p> Signup and view all the answers

What significant role does RNA splicing play in humans?

<p>It increases the number of proteins from genes. (D)</p> Signup and view all the answers

What is the purpose of transfer RNA (tRNA) during translation?

<p>To interpret the genetic code from mRNA to proteins. (C)</p> Signup and view all the answers

Which component is NOT required for the translation process?

<p>DNA polymerase (D)</p> Signup and view all the answers

How is the 'final draft' of eukaryotic mRNA prepared?

<p>Through capping, tailing, and splicing. (B)</p> Signup and view all the answers

What term describes the conversion from nucleic acid language to protein language?

<p>Translation (B)</p> Signup and view all the answers

Which of the following statements about ribosomes is incorrect?

<p>Ribosomes convert protein language back to nucleic acid language. (A)</p> Signup and view all the answers

Which option accurately describes codons?

<p>Three-letter sequences of nucleotides. (B)</p> Signup and view all the answers

What must occur before translation can take place?

<p>Introns must be spliced out. (B)</p> Signup and view all the answers

Flashcards

What is a polynucleotide?

A polynucleotide is a long chain of nucleotides linked together by phosphodiester bonds.

What are the components of a nucleotide?

A nucleotide is made up of three parts: a sugar molecule (deoxyribose in DNA), a phosphate group, and a nitrogenous base.

What are the nitrogenous bases in DNA?

The four nitrogenous bases found in DNA are adenine (A), guanine (G), cytosine (C), and thymine (T).

What are the base pairing rules in DNA?

Adenine (A) always pairs with thymine (T), and guanine (G) always pairs with cytosine (C).

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What does it mean for DNA strands to be antiparallel?

The two strands of DNA are antiparallel, meaning they run in opposite directions. This ensures that the bases can pair correctly.

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What is the structure of DNA?

The structure of DNA is a double helix, meaning it is twisted like a spiral staircase.

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What makes up the DNA helix?

The sugar-phosphate backbone forms the sides of the DNA helix, while the nitrogenous bases form the rungs.

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How is DNA organized?

DNA is organized into chromosomes, which are long, threadlike structures found in the nucleus of cells.

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What is the function of DNA?

DNA contains the genetic instructions for an organism, which are passed down from parents to offspring.

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What are the roles of DNA?

DNA is responsible for the inheritance of traits and plays a crucial role in protein synthesis.

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Antiparallel DNA strands

The two strands of DNA run in opposite directions, meaning that the sugar molecules on one strand are upside down compared to those on the other strand.

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Sugar-Phosphate Backbone

The sugar-phosphate backbone of DNA is formed by alternating sugar and phosphate groups, creating a strong and stable structure.

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Base Pairing Rules

Adenine (A) always pairs with thymine (T), and cytosine (C) always pairs with guanine (G) in DNA.

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DNA Replication

The process of copying DNA involves creating two identical DNA molecules from one original molecule.

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DNA Polymerase

DNA polymerase is an enzyme that builds new DNA strands by adding nucleotides to a growing chain, following the base pairing rules.

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Double Helix

The double helix is the twisted ladder-like structure of DNA, where two strands of nucleotides are held together by hydrogen bonds between complementary bases.

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DNA Replication Accuracy

The process of copying DNA is extremely accurate, with fewer than one in a billion bases incorrectly paired, ensuring the fidelity of genetic information.

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Enzymes in DNA Replication

Enzymes play a vital role in maintaining the integrity of DNA, ensuring that it is copied accurately and protected from damage.

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Promoter

A specific sequence of DNA nucleotides that signals where the RNA polymerase should attach to begin transcription.

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Initiation (transcription)

The first phase of transcription where RNA polymerase attaches to the promoter on DNA and begins building the RNA molecule.

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Elongation (transcription)

The second phase of transcription where RNA polymerase moves along the template strand of DNA, adding complementary RNA nucleotides to the growing RNA molecule.

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Terminator

A specific DNA sequence that signals the end of transcription, causing RNA polymerase to detach from the DNA and releasing the completed RNA molecule.

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Origins of replication

Specific starting points along the DNA molecule where replication begins to create two new strands.

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RNA primers

Short sequences of DNA that act as primers, providing a starting point for DNA polymerase to begin adding nucleotides.

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Replication bubbles

Regions where the DNA strands separate, creating a bubble-like structure, allowing for replication.

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Antiparallel strands

The two strands of DNA run in opposite directions, with one strand running 5' to 3' and the other 3' to 5'.

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Leading strand

The new DNA strand built in a continuous manner, following the 5' to 3' direction of the template strand.

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Lagging strand

The new DNA strand built in a discontinuous manner, with short fragments called Okazaki fragments, due to the 3' to 5' direction of the template strand.

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Translation Initiation

The process of bringing all the necessary components together to begin protein synthesis: mRNA, the first tRNA carrying the starting amino acid (methionine), and the two ribosomal subunits.

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Translation Elongation

The process of adding amino acids one by one to the growing polypeptide chain, forming a protein.

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Translation Termination

The step in translation where the ribosome encounters a stop codon in the mRNA sequence, signaling the end of protein synthesis.

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A Site

The site on the ribosome where the incoming tRNA carrying the next amino acid binds.

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P Site

The site on the ribosome where the tRNA carrying the growing polypeptide chain resides.

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Translocation

The process in translation during which the tRNA in the P site detaches from the ribosome and the ribosome moves to the next codon on the mRNA molecule. This moves the tRNA carrying the growing polypeptide chain to the P site.

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Anticodon

The three-nucleotide sequence on a tRNA molecule that is complementary to the mRNA codon.

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Codon

The three-nucleotide sequence on an mRNA molecule that codes for a specific amino acid.

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What is RNA splicing?

RNA splicing is the removal of non-coding regions (introns) from pre-mRNA, resulting in a mature mRNA molecule that can be translated into a protein.

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Why is RNA splicing important?

RNA splicing is crucial for human gene expression, as it allows a single gene to produce multiple protein variants, expanding the proteome.

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What are ribosomes?

Ribosomes are complex molecular machines composed of ribosomal RNA (rRNA) and proteins. They act as the site of protein synthesis, reading the mRNA code and assembling amino acids into a polypeptide chain.

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What is the role of tRNA in translation?

Transfer RNA (tRNA) molecules act as molecular interpreters during translation. Each tRNA carries a specific amino acid and recognizes a corresponding codon on the mRNA, facilitating the assembly of the polypeptide chain.

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What is translation?

Translation is the process of converting the genetic information encoded in mRNA into a protein sequence. It occurs on ribosomes, where the mRNA sequence is read and translated into a chain of amino acids.

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What is a codon?

A codon is a three-nucleotide sequence on mRNA that specifies a particular amino acid or signals the start or stop of protein synthesis.

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What is the genetic code?

The genetic code is the set of rules that determines which amino acid is encoded by each codon. It is nearly universal across all living organisms, suggesting a common ancestor.

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What is the proteome?

The proteome refers to the complete set of proteins expressed by a cell or organism at a given time. It is influenced by factors such as gene expression, splicing, and post-translational modifications.

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Study Notes

DNA Structure and Function

  • DNA is a single molecule
  • A single "typo" in DNA can cause life-threatening diseases
  • All life on Earth has a universal genetic code. This means DNA can be used to genetically modify other organisms
  • Enzymes maintain DNA integrity to over 99.999% accuracy
  • Mad cow disease is caused by an abnormal protein molecule

The Deadliest Virus

  • In 2009, an unusual flu strain (H1N1) emerged in Mexico City
  • Pigs had little influence in the spread
  • This strain was declared a 21st-century pandemic by the WHO
  • The virus quickly spread throughout California and Texas
  • The WHO implemented a global containment plan
  • By 2010, the pandemic had been declared over by the WHO
  • Approximately 18,000 deaths from the H1N1 strain were confirmed
  • Estimates of unreported deaths exceeded 250,000
  • The H1N1 strain was a hybrid (combination) of a known flu virus and an Asian swine flu virus
  • The 1918-1919 flu pandemic is considered the deadliest, killing 40 million globally

DNA: Structure and Replication

  • DNA is a chemical component of cells
  • DNA is the hereditary material (discovered in the 1940s and 1950s)
  • Scientists sought to discover the structure of DNA
  • DNA consists of monomers called nucleotides
  • Polynucleotides are long chains of nucleotides
  • Each nucleotide has a sugar, phosphate group, and a nitrogenous base
  • DNA is a double helix
  • Nitrogenous bases A, T, C, and G
  • A pairs with T, C pairs with G
  • Watson and Crick discovered the double helix structure of DNA in 1953

DNA Replication

  • DNA replicates to create new cells
  • Each strand of DNA acts as a template for a new strand, following base-pairing rules (A-T and C-G)
  • DNA polymerase links new nucleotides to the growing strand
  • Replication occurs at specific sites called origins of replication, and these sites create replication bubbles
  • The process is rapid (around 50 nucleotides per second) and extremely accurate (lower than one error in a billion bases)

From DNA → RNA → Protein

  • DNA does not directly build proteins
  • RNA acts as a messenger for protein synthesis
  • Transcription is the process of transferring genetic information from DNA to RNA within the nucleus (Transcription → RNA)
  • Translation is the process where RNA instructs protein synthesis in the cytoplasm (Translation → Protein)
  • Transcription and translation are the means by which genes control cellular activities

From Nucleotides → Amino Acids

  • The language of DNA and RNA is a sequence of nucleotides (A, T, C, G)
  • The amino acid sequence dictates the polypeptide’s sequence
  • Genetic code consists of triplets of nucleotides called codons, which code for amino acids
  • There are 64 possible codons; 61 code for amino acids, and 3 code for stop signals

The Genetic Code

  • The genetic code is universal. This means it is the same for all living organisms
  • The genetic code converts nucleotide sequences into amino acid sequences
  • 61 codons code for amino acids, and 3 codons are stop codons
  • AUG codon specifies methionine and acts as the start codon

Transcription

  • RNA polymerase creates a new RNA molecule complementary to one strand of DNA
  • Transcription occurs in three phases: initiation (RNA polymerase attaches to the promoter), elongation (RNA polymerase moves along the DNA elongating the RNA strand), and termination (RNA polymerase reaches the terminator and dissociates)

Translation

  • DNA instructions are carried out in the cytoplasm
  • Ribosomes translate RNA sequences into polypeptide chains
  • Messenger RNA (mRNA) carries the instructions
  • Transfer RNA (tRNA) carries amino acids to the ribosome
  • Ribosomes coordinate mRNA and tRNA function, and generate proteins

Mutations

  • Mutations are changes in DNA sequence
  • Mutations can be nucleotide substitutions or insertions/deletions
  • Base substitutions may be silent, resulting in no change to the protein product, or missense mutations, resulting in amino acid changes, or nonsense mutations, prematurely terminating protein synthesis
  • Frameshift mutations introduce changes in subsequent codons due to insertion/deletion, often causing nonfunctional proteins
  • Mutations can be spontaneous or caused by mutagens
  • Mutagens include high-energy radiations (X-rays, UV light) and specific chemicals.

Viruses and Other Noncellular Infectious Agents

  • Viruses are infectious particles composed of nucleic acid and protein coat
  • Viruses require a host cell to reproduce
  • Bacteriophages infect bacteria. They enter a lytic or lysogenic cycle in which DNA is either released immediately or integrated into the host's chromosome
  • Some animal viruses have a membranous envelope; these viruses reproduce inside the host’s nucleus.

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