Biology Chapter on Early Life and Photosynthesis

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Questions and Answers

What was the initial source of energy for the first life forms?

  • The sun
  • Polyphosphates
  • ATP
  • Pre-existing energy-rich substances (correct)

What was the primary consequence of the depletion of H2S as a reducing agent in early photosynthesis?

  • The development of more efficient photosynthetic systems utilizing water (correct)
  • The depletion of atmospheric oxygen
  • The formation of the ozone layer
  • The evolution of aerobic respiration

What significant change in the Earth's atmosphere occurred as a result of the evolution of oxygenic photosynthesis?

  • A decrease in the concentration of water vapor
  • A decrease in the concentration of nitrogen
  • An increase in the concentration of atmospheric oxygen (correct)
  • An increase in the concentration of carbon dioxide

What was the primary function of the ozone layer that formed in the early Earth's atmosphere?

<p>To provide a shield against ultraviolet radiation from the sun (C)</p> Signup and view all the answers

Which of these events occurred before the formation of the ozone layer?

<p>The depletion of H2S in the environment (A), The evolution of oxygenic photosynthesis (B), The accumulation of oxygen in the atmosphere (D)</p> Signup and view all the answers

What is considered the simplest structure that can be classified as alive?

<p>A cell (B)</p> Signup and view all the answers

Which of the following characteristics is NOT associated with living systems?

<p>Inability to respond to stimuli (A)</p> Signup and view all the answers

According to the ideas presented, which process is crucial for the continuity of life?

<p>Replication (C)</p> Signup and view all the answers

What does the Gaia hypothesis suggest about the interaction between organisms and their surroundings?

<p>Organisms contribute to a self-regulating system that maintains life conditions. (B)</p> Signup and view all the answers

Life is often distinguished from non-life through its capability for what process?

<p>Replication (C)</p> Signup and view all the answers

Which aspect of living systems reflects their open nature?

<p>They require energy and matter from the outside. (A)</p> Signup and view all the answers

An essential part of life involves organisms maintaining which of the following?

<p>Homeostasis (D)</p> Signup and view all the answers

Which of the following forms of life is NOT mentioned as a category of living organisms?

<p>Viroids (A)</p> Signup and view all the answers

Who provided the final evidence against the concept of spontaneous generation?

<p>Louis Pasteur (A)</p> Signup and view all the answers

Which raw materials were present in the primitive atmosphere conducive for prebiotic synthesis?

<p>Hydrogen, methane, and ammonia (B)</p> Signup and view all the answers

What is chemical evolution primarily concerned with?

<p>The formation of complex organic molecules from simple molecules (A)</p> Signup and view all the answers

What role did comets play in the early development of life on Earth?

<p>They collided with Earth to deposit raw materials. (D)</p> Signup and view all the answers

Which process involves the polymerization of monomers into biopolymers?

<p>Chemical evolution (C)</p> Signup and view all the answers

What was the largest source of energy available on primitive Earth?

<p>Solar energy (A)</p> Signup and view all the answers

What are the fundamental components synthesized during chemical evolution?

<p>Monomers like sugars and amino acids (D)</p> Signup and view all the answers

What did Lazzaro Spallanzani achieve in his experiments?

<p>He detected loopholes in previous experiments. (C)</p> Signup and view all the answers

What is the first step in the Strecker synthesis?

<p>Formation of an imine from an aldehyde and ammonia (D)</p> Signup and view all the answers

Why was the primitive atmosphere considered reducing?

<p>Little to no oxygen was present, allowing for UV radiation (A)</p> Signup and view all the answers

What is the main problem with the suggested formation of fatty acids in primitive conditions?

<p>Inability to sustain high temperatures over time (C)</p> Signup and view all the answers

How does the condensation reaction occur between two glucose molecules?

<p>By eliminating water as a byproduct (D)</p> Signup and view all the answers

What role do condensing agents play in biochemical synthesis?

<p>They help shift equilibrium towards condensation reactions (A)</p> Signup and view all the answers

What can be inferred about the polymerization process?

<p>It leads to the formation of more complex molecules from monomers (D)</p> Signup and view all the answers

What is typically the benefit of using high-energy intermediates in biochemical reactions?

<p>They enhance the reactivity of the starting monomers (B)</p> Signup and view all the answers

What type of molecule results from the reaction of an aldehyde and ammonia in the Strecker synthesis?

<p>Imine (B)</p> Signup and view all the answers

What are the key environmental variables that contribute to the habitability of Earth?

<p>Presence of moisture, air, and appropriate temperature (A)</p> Signup and view all the answers

What distinguishes complex systems biology from systems biology?

<p>CSB studies the complexity of structures and functions in biological systems (C)</p> Signup and view all the answers

Which two planets in the Kepler-62 system are located within the star's habitable zone?

<p>Kepler-62e and Kepler-62f (D)</p> Signup and view all the answers

What is a common misconception regarding the conditions needed for life on other planets?

<p>All planets have the right conditions to support life (B)</p> Signup and view all the answers

What viewpoint holds that life requires a supernatural force to originate?

<p>Special creation (D)</p> Signup and view all the answers

What is the primary focus of complex systems biology?

<p>To explore and model the relational patterns essential to life (C)</p> Signup and view all the answers

Why is the special creation view criticized by some scientists?

<p>It contradicts natural laws and cannot be proven (A)</p> Signup and view all the answers

Which statement about the biosphere's impact on global temperatures is true?

<p>The biosphere affects global temperatures through complex interactions (A)</p> Signup and view all the answers

What role do polynucleotides and polypeptides play in early life forms?

<p>Polynucleotides specify the synthesis of polypeptides while polypeptides catalyze polynucleotide replication. (A)</p> Signup and view all the answers

What are protobionts as suggested by Oparin?

<p>Boundary formations around catalytic molecules likely proteins. (A)</p> Signup and view all the answers

How did Oparin believe protobionts were formed?

<p>Via the spontaneous separation of aqueous solutions of polymers. (D)</p> Signup and view all the answers

What is one criticism of Oparin’s coacervate droplets?

<p>They were derived from materials that were already formed by living systems. (B)</p> Signup and view all the answers

What did Fox contribute to the understanding of early life structures?

<p>He discovered that proteinoids could form microspheres with membranes. (C)</p> Signup and view all the answers

Which statement accurately describes the membranes of Fox's proteinoids?

<p>They are porous and result in significant leakage of contents. (B)</p> Signup and view all the answers

What evolutionary process was driven by competition for nutrients?

<p>The development of metabolic pathways. (B)</p> Signup and view all the answers

The discovery of ribozymes suggests what about the evolution of enzymes?

<p>Ribozymes likely originated before protein-based enzymes. (C)</p> Signup and view all the answers

Flashcards

What is life?

A biological process that allows organisms to sustain themselves, replicate, and adapt to their environment. It involves self-sustenance, replication, and mutation.

Living systems are...

Living systems are open, self-organizing entities that constantly interact with their environment. They thrive on the flow of information, energy, and matter.

What is the Gaia hypothesis?

A hypothesis suggesting that organisms interact with their inorganic surroundings on Earth to create a self-regulating system that maintains conditions suitable for life. It highlights the interconnectedness of living and non-living components.

What is homeostasis?

The ability of a living organism to maintain a stable internal environment by adjusting to external changes. It's key for survival.

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What is a cell?

The smallest unit of life that can function independently. It has a well-defined boundary (cell membrane) and contains all the essential components for life.

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What is reproduction?

The process by which living organisms produce new individuals similar to themselves. It's essential for the continuation of life.

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What is mutation?

Changes in the genetic makeup of an organism, leading to variations within a species. It's a driving force behind evolution.

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What is natural selection?

The process by which organisms with traits better suited to their environment survive and reproduce more successfully. It leads to the evolution of species over time.

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Complex Systems Biology (CSB)

A branch of biology that studies the complexity of biological structures, functions, and how organisms and species evolve by focusing on intricate interactions within bionetworks and fundamental relational patterns essential for life.

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Complex Systems Biology (CSB) - Focus

A field of theoretical sciences focused on identifying and modeling the relational patterns essential for life. It overlaps partially with complex systems theory and systems biology, but it delves more into the complexities and relational patterns of living systems.

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Habitable Conditions for Life

The conditions under which life can exist and thrive, defined by factors like suitable temperature, liquid water, and a breathable atmosphere.

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Habitable Zone

The range of orbital distances around a star where a planet can have liquid water on its surface, implying potential for life.

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Special Creation Theory

The theory that life on Earth was created by a supernatural force, typically a divine being. This view is held by many religions, including Christianity, Islam, and some African traditional faiths.

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Criticism of Special Creation Theory

The core argument against the special creation theory, which states that it relies on mystical concepts and cannot be scientifically proven or tested.

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Habitable Zones of the Milky Way

Areas of the galaxy where life is more likely to exist because they have planets in the habitable zone of stars with conditions suitable for life.

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Kepler-62

A star slightly cooler and smaller than our Sun, located in the constellation Lyra, approximately 1200 light-years away from Earth. It has five planets, two of which (Kepler-62e and Kepler-62f) are within its habitable zone.

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Spontaneous Generation

The theory that life arose from non-living matter.

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Louis Pasteur

A scientist who disproved spontaneous generation by showing that sterile broth only became contaminated when exposed to air containing microbes.

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Chemical Evolution

The process of forming complex organic molecules from simpler molecules, like those found in the early Earth's atmosphere.

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Biological Evolution

The process of forming a self-sustaining, self-replicating system from the complex organic molecules produced during chemical evolution.

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Primitive Earth's Atmosphere

Early Earth's atmosphere contained simple molecules like methane, ammonia, and water vapor, which were used to synthesize organic molecules needed for life.

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Early Earth's Energy Sources

Energy sources like sunlight and lightning provided the energy needed for the formation of organic molecules on early Earth.

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Monomer Formation

The formation of monomers, like sugars and amino acids, from simple molecules like methane and ammonia.

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Polymerization

The linking of monomers into larger polymers, like proteins and nucleic acids.

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Early Energy Metabolism

The process where organisms started using pre-existing energy-rich substances in their environment to produce energy.

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Photosynthesis Evolution

Photosynthesis evolved to harness the inexhaustible energy from the sun.

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H2O as a Reducing Agent

As reducing agents like H2S became scarce, photosynthesis evolved to use the more prevalent H2O, producing oxygen as a byproduct.

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Oxygen-based Energy Metabolism

The accumulation of oxygen in the atmosphere led to the evolution of oxygen-based energy metabolism, a more efficient way to use energy.

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Ozone Layer Formation

The ozone layer, which protects life from harmful UV rays, formed as atmospheric oxygen levels increased due to photosynthesis.

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Translation

The process where a polynucleotide (DNA or RNA) guides the synthesis of a polypeptide (protein) chain.

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Ribozymes

RNA molecules that have catalytic activity, meaning they can act as enzymes.

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Cell

A simple structure that shows evidence of life. It is a compartment with a membrane separating it from the external environment, preventing it from dissolving.

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Protobionts

Early life forms proposed by Oparin, formed from the spontaneous aggregation of molecules, creating a membrane and a distinct internal environment.

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Coacervation

The spontaneous separation of a solution into two phases, one with a higher concentration of polymers and another with a lower concentration.

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Microspheres

Small, spherical structures formed from proteinoids (protein-like molecules). These structures resemble primitive cells, with a double-layered membrane.

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Metabolic pathway

A sequence of chemical reactions that enable organisms to obtain energy and build essential molecules.

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Competition for nutrients as a driver of metabolic pathways

The development of metabolic pathways was driven by competition for nutrients, as early life forms struggled to survive in their environment.

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What is the Strecker Synthesis?

The Strecker synthesis is a chemical reaction that produces amino acids from aldehydes or ketones. The three steps are: 1) Reaction of an aldehyde or ketone with ammonia to form an imine. 2) Cyanide addition to the imine. 3) Hydrolysis of the aminonitrile to form the amino acid.

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What are polymers?

Polynucleotides, like DNA and RNA, are long chains of nucleotide monomers. Similarly, polypeptides are long chains of amino acid monomers, and polysaccharides are long chains of sugar monomers.

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What is a condensation reaction?

Condensation reactions involve the joining of two molecules with the release of a small molecule, often water. This is a common way to build polymers. The reverse reaction, hydrolysis, uses water to break down polymers.

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What are condensing agents?

Condensing agents help drive condensation reactions by removing water from the reaction environment. This shifts the equilibrium toward product formation.

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What are Carbodiimides?

Carbodiimides are a type of condensing agent that have a high-energy intermediate. This intermediate makes the condensation reaction more favorable and reactive.

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Why was the primitive atmosphere said to be reducing?

The early Earth's atmosphere lacked a significant amount of oxygen, which meant there was no ozone layer to shield UV radiation from the sun. Consequently, the atmosphere was highly reducing, meaning it contained a lot of hydrogen and other reducing agents like methane and ammonia.

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What are the challenges with the prebiotic synthesis of fatty acids?

Fatty acids were formed under harsh conditions of high temperature and pressure, requiring significant hydrogen. This is problematic for the prebiotic synthesis of fatty acids because such extreme conditions were unlikely to exist consistently in the early Earth's environment.

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How were nucleotide bases formed on early Earth?

The prebiotic synthesis of nucleotide bases involves the polymerization of hydrogen cyanide (HCN). Subsequent steps involve further reactions and modifications to create the nitrogenous bases found in DNA and RNA.

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Study Notes

BIOL 157: Biological Chemistry, Lecture 2: Evolution of Living Organisms

  • Life is defined as a process of self-sustenance, replication, and mutation. Self-sustenance allows for the repair of material loss, and replication ensures the continuation of life. Mutation permits adaptation to changing environments.
  • Life is not possible on all planets; Earth's conditions are suitable for sustaining and perpetuating life. These conditions include moisture, air, and appropriate temperatures.
  • The Gaia hypothesis proposes that organisms interact with their environment to maintain conditions for life on Earth. This self-regulating system includes global temperature, ocean salinity, atmospheric oxygen, a liquid water hydrosphere, and other environmental variables.
  • Complex systems biology (CSB) is a branch of biology that focuses on the complexity of biological organisms and the emergence and evolution of living organisms. CSB emphasizes relationships in biological systems.
  • Life did not arise on all planets due to differing conditions; Earth's conditions support life.
  • The habitable zones of the Milky Way are regions around stars where planets of a certain size are capable of supporting liquid water. Kepler-62 is a star where some planets are located within a "habitable zone."
  • Habitable zone distance (HZD) measures the distance of an exoplanet from the center of its star's habitable zone. Values between -1 and +1 HZU indicate planets within the habitable zone.
  • Standard Primary Habitability (SPH) measures the thermal and water climate suitability of planets for primary producers (vegetation). Values closer to 1 represent more habitable conditions.

Origin of Life - Various Views

  • Special creation: Life is so complex, it required a supernatural force. This view is based on cultural and religious foundations, and is not scientifically provable.
  • Colonization theory (Panspermia): Life originated elsewhere in the universe and was brought to Earth. Proposed evidence includes the potential for bacteria to survive in space and the presence of organic molecules in meteorites, however, this theory does not explain the origin of life outside of Earth.

Evidence for Panspermia

  • Some bacteria can survive harsh space conditions (UV radiation, proton bombardments, cold).
  • Meteorites contain organic molecules like amino acids and clays.
  • Comets could have delivered organic compounds to Earth.

Spontaneous Generation Theory

  • This theory proposes that life can arise spontaneously from non-living matter.
  • Aristotle and Van Helmont supported early notions of spontaneous generation, however, experiments by Francesco Redi and Louis Pasteur disproved this notion.

Long-term Spontaneous Generation (Abiogenesis)

  • JBS Haldane and A.I. Oparin proposed that life originated from non-living matter on early Earth.
  • Early conditions included essential components for the synthesis of monomers into macromolecules such as sunlight or lightning.
  • Raw materials readily available on early Earth made chemical evolution a possibility.

Prebiotic Soup (Primordial Soup)

  • Chemical synthesis resulting from elements in early earth's atmosphere led to complex molecules forming in bodies of water. Oxygen did not exist in early earth.
  • Stanley Miller and Harold Urey's experiments simulated these conditions to generate amino acids from simple inorganic compounds. The results supported the idea that basic building blocks of life could arise under early conditions.
  • Prebiotic synthesis resulted in the production of fatty acids, monosaccharides, amino acids, and nucleotide bases from raw materials.

Polymerization and Condensing Agents

  • Polymerization (the linking of monomers) is crucial in forming complex molecules.
  • Condensing agents like polyphosphates can promote polymerization by removing water from the reaction.
  • Processes to overcome competition of water with reactants and products in early earth like evaporation and adsorption onto minerals like clays supported processes necessary for polymerization. This creates an environment advantageous to polymerization processes.

Formation of Cells and Membranes

  • The simplest life form evidence found is the cell membrane. A cell needs a membrane to separate itself from its surrounding medium.
  • Oparin and Fox investigated membrane formation for early life, suggesting it came from molecules capable of acting as catalysts, most likely proteins.
  • Coacervation—a process for separating phases of aqueous solutions—provided a possible mechanism for protobiont formation, where initial cells could form.

Development of Metabolic Pathways

  • Competition among early organisms for nutrients drove the evolution of metabolic pathways.
  • Organisms developed enzymatic systems that efficiently synthesize necessary components from simpler predecessors.
  • Early energy rich compounds like ATP were essential for metabolic processes.

Evolution of Photosynthesis

  • Photosynthetic organisms evolved to utilize sunlight's energy.
  • Starting with a dependence on reductive agents like H2S, photosynthesis eventually leveraged the more ubiquitously available water.
  • Evolved systems in photosynthesis led to the eventual release of oxygen, impacting atmospheric composition.

Oxygen's Role in Atmosphere

  • Oxygen was a minor component until the evolution of photosynthetic organisms. Only then was the ozone layer formed, providing protection from UV radiation.
  • This event marked a change in the earth's atmosphere composition and conditions.

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