Biology Chapter: DNA Transformation Experiments

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Questions and Answers

What is the primary function of the replisome in DNA replication?

  • To synthesize RNA from DNA templates
  • To coordinate the synthesis of leading and lagging strands (correct)
  • To copy DNA into proteins
  • To prevent mutations during DNA replication

In which direction does the replisome move during DNA replication?

  • Can move in either direction depending on the strand
  • Opposite to the direction of the fork
  • It does not move; it remains stationary
  • In the direction of the fork (correct)

What mechanism does the replisome utilize to synthesize the lagging strand?

  • Stranding using RNA primers only
  • A looping mechanism (correct)
  • Multiple enzymes acting independently
  • Continuous synthesis of nucleotides

What is the role of DNA polymerase in DNA replication?

<p>To proofread and correct errors in nucleotide sequences (C)</p> Signup and view all the answers

What type of DNA damage can the repair mechanism specifically mentioned address?

<p>Bulky DNA damage from radiation and mutagens (C)</p> Signup and view all the answers

What effect does histone methylation have on chromatin structure?

<p>Tighter chromatin packaging (B)</p> Signup and view all the answers

Why can't polymerase add nucleotides directly to the 5' end of a DNA strand?

<p>It has phosphate groups that are too electronically dense (B)</p> Signup and view all the answers

What is the primary effect of epigenetics in relation to gene expression?

<p>Silences gene expression through chemical modifications (B)</p> Signup and view all the answers

In which direction do polymerases read the DNA during transcription?

<p>3' to 5' (B)</p> Signup and view all the answers

What structural charge do histones possess?

<p>Positively charged (C)</p> Signup and view all the answers

What is the primary function of helicase in DNA replication?

<p>To break apart the DNA strands (A)</p> Signup and view all the answers

Which enzyme catalyzes the elongation of the DNA chain during replication?

<p>DNA polymerase (C)</p> Signup and view all the answers

What is needed by DNA polymerase to begin synthesizing a new DNA strand?

<p>dATP (C)</p> Signup and view all the answers

What type of bond is formed between nucleotides during DNA replication?

<p>Phosphodiester bond (C)</p> Signup and view all the answers

In which direction does DNA elongation occur?

<p>5' to 3' (C)</p> Signup and view all the answers

What is released when a nucleotide is added to the growing DNA strand?

<p>Two phosphate groups (B)</p> Signup and view all the answers

What role do single-stranded binding proteins play during DNA replication?

<p>They hold DNA strands apart (B)</p> Signup and view all the answers

What component contributes to the energy necessary for forming new nucleotides during DNA synthesis?

<p>Phosphate groups (B)</p> Signup and view all the answers

What does the intermediate density of DNA after one round of replication indicate?

<p>Each new DNA molecule contains one strand from the original heavy DNA. (C)</p> Signup and view all the answers

What protein complex recognizes the origins of replication in eukaryotic chromosomes?

<p>Origin Recognition Complex (ORC) (C)</p> Signup and view all the answers

How do eukaryotic chromosomes differ from prokaryotic ones regarding DNA replication?

<p>Eukaryotic chromosomes have multiple origins of replication. (B)</p> Signup and view all the answers

What role do helicases play in DNA replication?

<p>They unwind the DNA double helix. (D)</p> Signup and view all the answers

What does the semi-conservative model of DNA replication state?

<p>Each new DNA molecule contains one original and one new strand. (A)</p> Signup and view all the answers

Which of the following is NOT a characteristic of eukaryotic replication?

<p>Replication occurs in a single cellular compartment. (B)</p> Signup and view all the answers

What is the effect of having multiple origins of replication in eukaryotic chromosomes?

<p>Ability to replicate large genomes efficiently. (A)</p> Signup and view all the answers

During DNA replication, which proteins are recruited by the Origin Recognition Complex (ORC)?

<p>Helicases and polymerases. (D)</p> Signup and view all the answers

What is the primary role of telomerase in cells?

<p>To add DNA to telomeres (A)</p> Signup and view all the answers

What is the result of sequence changes in nucleotides?

<p>They may result in mutations that can be passed to the next generation. (C)</p> Signup and view all the answers

Which type of chromatin is typically found at the centromeres and telomeres?

<p>Heterochromatin (D)</p> Signup and view all the answers

How does euchromatin differ from heterochromatin?

<p>Euchromatin is less condensed and more accessible to RNA polymerase. (C)</p> Signup and view all the answers

Why is an RNA primer necessary for DNA synthesis?

<p>RNA primers provide a free 3' hydroxyl group for DNA polymerase. (C)</p> Signup and view all the answers

What issue arises at the end of the chromosome during DNA replication?

<p>A shortage of RNA primers leads to overhanging DNA. (C)</p> Signup and view all the answers

What are nucleosomes composed of?

<p>DNA wrapped around histone proteins (C)</p> Signup and view all the answers

What is the state of heterochromatin in relation to transcription?

<p>It is transcriptionally silent. (C)</p> Signup and view all the answers

What is the role of telomeres in eukaryotic DNA?

<p>They postpone the erosion of genes near the chromosome ends. (C)</p> Signup and view all the answers

What happens to the DNA during the action of telomerase?

<p>Repeated sequences are added to the ends. (A)</p> Signup and view all the answers

What would potentially happen if germ cell chromosomes continue to shorten?

<p>Essential genes could be lost in the gametes. (C)</p> Signup and view all the answers

What is the main characteristic of euchromatin?

<p>It is accessible for transcription. (B)</p> Signup and view all the answers

How does the End Replication Problem affect cellular lifespan?

<p>It may lead to cell death due to DNA shortening. (A)</p> Signup and view all the answers

What enzyme is responsible for lengthening telomeres in germ cells?

<p>Telomerase. (D)</p> Signup and view all the answers

What is the primary function of heterochromatin during cell division?

<p>It plays a role in chromosome segregation. (C)</p> Signup and view all the answers

What can potentially occur due to the absence of telomeres during replication?

<p>Essential genes may erode in subsequent generations. (D)</p> Signup and view all the answers

Flashcards

Replisome

A complex of proteins that coordinates the replication of both the leading and lagging strands of DNA, ensuring that both strands are synthesized simultaneously.

Direction of replisome movement

The direction in which the replisome moves along the DNA during replication, following the direction of the replication fork.

DNA polymerase proofreading

A mechanism used by DNA polymerase to correct errors during DNA replication by removing and replacing incorrectly incorporated nucleotides.

Nucleotide Excision Repair (NER)

A DNA repair mechanism that removes bulky DNA damage caused by various agents like radiation or specific chemicals.

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5' to 3' polymerase activity

The ability of DNA polymerase to only add nucleotides to the 3' end of a growing DNA strand.

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DNA Replication

The process of creating a new DNA molecule that is identical to the original DNA molecule. Semi-conservative replication is where each new DNA molecule consists of one original strand and one newly synthesized strand.

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Intermediate Density After Replication

When the DNA density is intermediate after one replication round, it suggests that each new DNA molecule has one old (heavy) strand and one new (light) strand. This supports the semi-conservative model.

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Origin of Replication

A specific sequence of DNA where replication begins. It's like the starting point for copying the DNA.

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Multiple Origins of Replication in Eukaryotes

Prokaryotes have a single origin of replication, while eukaryotes have multiple origins of replication, allowing for more efficient replication of their larger genomes.

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Origin Recognition Complex (ORC)

A protein complex that recognizes and binds to the origin of replication, initiating the replication process in eukaryotes.

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Helicases

Enzymes that unwind the DNA double helix at the origin of replication, making the DNA strands accessible for copying.

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DNA Polymerases

Enzymes that synthesize new DNA strands using the existing strands as templates. They add new nucleotides onto the growing DNA chain.

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Efficient Replication in Eukaryotes

The process of replicating DNA is generally faster in eukaryotes due to the presence of multiple origins of replication. This allows for more efficient copying of the larger eukaryotic genomes.

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Single-stranded binding proteins

A protein that binds to single-stranded DNA, preventing it from rejoining after being separated by helicase.

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dATP

A type of nucleotide specifically used in DNA synthesis that provides the building blocks for the new DNA strand. It contains deoxyribose sugar, a phosphate group, and one of the four nitrogenous bases (adenine, guanine, cytosine, or thymine).

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Elongation of DNA

The way DNA polymerase adds nucleotides to a growing DNA strand, always in the 5' to 3' direction.

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Phosphodiester bond

The addition of a new nucleotide to the growing DNA strand involves forming a phosphodiester bond between the 5' phosphate group of the incoming nucleotide and the 3' hydroxyl group of the last nucleotide on the strand.

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Template strand

The existing strand of DNA that serves as a template for the new strand to be synthesized during DNA replication.

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Mutation

A permanent change in the DNA sequence that can be passed on to offspring. It's the source of genetic diversity and evolution.

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Nucleotide Excision Repair

A DNA repair mechanism that removes damaged or incorrect nucleotides and replaces them with the correct ones.

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End Replication Problem

The problem that arises when DNA polymerase cannot create a new DNA strand without a primer at the end of a linear chromosome, leading to shortening of the chromosome.

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Telomeres

Specialized DNA sequences at the ends of chromosomes in eukaryotes that protect against the loss of important genetic information during replication.

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Telomerase

The enzyme that adds repetitive DNA sequences to the ends of telomeres in germ cells, preventing the shortening of chromosomes.

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How do mutations occur?

The process by which mistakes or damage in DNA can become permanent changes in the genetic code.

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Why do chromosomes get shorter?

The shortening of chromosomes during replication due to the lack of a primer at the end, leading to the loss of genetic material.

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How do Telomeres protect chromosomes?

The specialized DNA sequences at the ends of chromosomes that help protect against the loss of important genetic information during replication, but they don't prevent shortening completely.

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Chromosomes

Composed of DNA and proteins, chromosomes contain genetic information tightly packed into structures. There are two main types: euchromatin and heterochromatin.

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Euchromatin

A type of chromatin where DNA is less tightly packed, allowing genes to be accessed and transcribed. Think of it as 'active' DNA.

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Heterochromatin

A type of chromatin where DNA is tightly packed, making genes inaccessible for transcription. Think of it as 'inactive' DNA.

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Nucleosomes

Basic units of chromatin, resembling beads on a string. They are made of DNA wrapped around proteins called histones.

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Transcription

The process of copying DNA into RNA, allowing for gene expression and protein production.

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Histone Acetylation

Acetylation of histone proteins loosens the DNA packaging, making genes more accessible for transcription and increasing gene expression.

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Histone Methylation

Methylation of histone proteins tightens the DNA packaging, making genes less accessible for transcription and decreasing gene expression.

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Epigenetics

Epigenetics refers to changes in gene expression caused by mechanisms other than alterations in the DNA sequence itself, like methylation. These modifications can be influenced by environmental factors and can be inherited.

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3' and 5' ends of DNA

The 3' end of a DNA strand has a hydroxyl group (OH), while the 5' end has a phosphate group.

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Why can't polymerase add to 5' end?

DNA polymerases can only add nucleotides to the 3' end of a growing DNA strand because the phosphate group on the 5' end is too electronically dense for the enzyme to add nucleotides.

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Study Notes

Frederick Griffith's Experiment

  • Griffith's experiment demonstrated transformation
  • R and S strains of Streptococcus pneumoniae were used
  • S strain (smooth) has a polysaccharide capsule
  • R strain (rough) lacks a capsule
  • Injecting heat-killed S strain with R strain transformed the R strain into S
  • This showed that some factor from the heat-killed S strain could change the R strain

Oswald Avery and Maclyn McCarty's Experiment

  • Avery, MacLeod, and McCarty extended Griffith's work
  • They identified the transforming factor
  • Found that heat-killed S bacteria could only transform if their DNA remained intact
  • This confirmed DNA as the genetic material

Viral DNA Programming Cells

  • Viruses inject DNA into host cells
  • Phage DNA hijacks host cell machinery to replicate phage DNA
  • The host cell then produces proteins and more phage particles
  • These new particles lyse (burst) the host cell, releasing more viruses

What Did Chargaff Do?

  • Chargaff analyzed DNA from various organisms
  • Discovered consistent base ratios
  • C and G had equal ratios—A and T had equal ratios

Semi-conservative Replication

  • DNA replication is semi-conservative
  • Each new DNA molecule is composed of one old strand and one new strand
  • The two strands separate, and each serves as a template for a new strand

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