Podcast
Questions and Answers
What is the primary role of BAR domain proteins in vesicle budding?
What is the primary role of BAR domain proteins in vesicle budding?
- They infuse energy into the vesicle release process.
- They shape the plasma membrane to facilitate clathrin recruitment. (correct)
- They initiate the formation of clathrin-coated vesicles.
- They directly pinch off the vesicle from the membrane.
Dynamin requires GTP to induce shape changes necessary for vesicle release.
Dynamin requires GTP to induce shape changes necessary for vesicle release.
True (A)
What is responsible for recruiting local assembly of actin filaments during vesicle budding?
What is responsible for recruiting local assembly of actin filaments during vesicle budding?
Clathrin machinery
The crescent-shaped BAR domains interact with the lipid head groups via __________ interactions.
The crescent-shaped BAR domains interact with the lipid head groups via __________ interactions.
Match the following components to their functions:
Match the following components to their functions:
Which of the following factors contribute to increased insulin resistance?
Which of the following factors contribute to increased insulin resistance?
What is the role of lipid rafts in receptor function?
What is the role of lipid rafts in receptor function?
Insulin is commonly used in treating type 2 diabetes.
Insulin is commonly used in treating type 2 diabetes.
What effect does GLP-1 have on insulin release?
What effect does GLP-1 have on insulin release?
G protein-coupled receptors have a single transmembrane domain.
G protein-coupled receptors have a single transmembrane domain.
Blocking the Na channel in renal glucose handling leads to more glucose being in the ______.
Blocking the Na channel in renal glucose handling leads to more glucose being in the ______.
What is the function of secondary messengers like cyclic AMP in signal transduction?
What is the function of secondary messengers like cyclic AMP in signal transduction?
The ________ subunit of G protein-coupled receptors binds to GDP or GTP.
The ________ subunit of G protein-coupled receptors binds to GDP or GTP.
Match the following diabetes treatments to their effects:
Match the following diabetes treatments to their effects:
Match the following receptor types with their descriptions:
Match the following receptor types with their descriptions:
What is the primary role of NADPH?
What is the primary role of NADPH?
Glycolysis is an anabolic pathway that builds molecules.
Glycolysis is an anabolic pathway that builds molecules.
What are the two phases of the Pentose Phosphate Pathway?
What are the two phases of the Pentose Phosphate Pathway?
Glucose is largely obtained from the _____?
Glucose is largely obtained from the _____?
Match the following glucose transporters with their characteristics:
Match the following glucose transporters with their characteristics:
Which type of signaling involves signals released into the extracellular space?
Which type of signaling involves signals released into the extracellular space?
Endocrine signaling occurs in a fixed space and has regulatory effects.
Endocrine signaling occurs in a fixed space and has regulatory effects.
What is the primary purpose of secondary messengers in cell signaling?
What is the primary purpose of secondary messengers in cell signaling?
In signaling cascades, __________ removes the phosphate from proteins.
In signaling cascades, __________ removes the phosphate from proteins.
Match the type of cell communication with its description:
Match the type of cell communication with its description:
Which of the following outcomes can cell communication affect?
Which of the following outcomes can cell communication affect?
The signaling cascade can only activate proteins in the cytoplasm.
The signaling cascade can only activate proteins in the cytoplasm.
What role do kinases play in the phosphorylation process?
What role do kinases play in the phosphorylation process?
What happens to the membrane during apoptosis?
What happens to the membrane during apoptosis?
During early apoptosis, sphingomyelin translocates from the outer membrane to the inner membrane.
During early apoptosis, sphingomyelin translocates from the outer membrane to the inner membrane.
What role do ER trackers play in studying cell apoptosis?
What role do ER trackers play in studying cell apoptosis?
Propidium iodide enters the cell when apoptosis is occurring, and its presence indicates _____ cell viability.
Propidium iodide enters the cell when apoptosis is occurring, and its presence indicates _____ cell viability.
Match the following signaling pathways with their functions:
Match the following signaling pathways with their functions:
What triggers the activation of scramblases during apoptosis?
What triggers the activation of scramblases during apoptosis?
Flow cytometry provides higher spatial resolution than confocal microscopy.
Flow cytometry provides higher spatial resolution than confocal microscopy.
What is one advantage of using flow cytometry for studying cell populations?
What is one advantage of using flow cytometry for studying cell populations?
Flashcards
Lipid Rafts
Lipid Rafts
Specialized membrane microdomains enriched in cholesterol and sphingolipids, providing a platform for clustering receptors and signaling components.
Adaptor Proteins
Adaptor Proteins
Proteins that link different signaling molecules together, facilitating signal transmission.
Scaffolding Proteins
Scaffolding Proteins
Proteins that provide a framework for organizing signaling molecules, increasing efficiency and specificity of signal transduction.
Channel-Linked Receptors
Channel-Linked Receptors
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G Protein-Coupled Receptors
G Protein-Coupled Receptors
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BAR domains
BAR domains
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Clathrin's role in vesicle formation
Clathrin's role in vesicle formation
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Dynamin's function
Dynamin's function
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What is the importance of the BAR domain in clathrin-mediated endocytosis?
What is the importance of the BAR domain in clathrin-mediated endocytosis?
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Amphiphilic helices
Amphiphilic helices
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Contact-dependent signaling
Contact-dependent signaling
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Paracrine signaling
Paracrine signaling
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Endocrine signaling
Endocrine signaling
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Phosphorylation
Phosphorylation
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Kinase
Kinase
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GEF (Guanine nucleotide Exchange Factor)
GEF (Guanine nucleotide Exchange Factor)
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Signaling cascade
Signaling cascade
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Phosphatase
Phosphatase
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Insulin Resistance
Insulin Resistance
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Multiple Risk Factor Lowering
Multiple Risk Factor Lowering
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Incretin Effect
Incretin Effect
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GLP-1
GLP-1
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Normal Renal Glucose Handling
Normal Renal Glucose Handling
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Lipophilic Dyes
Lipophilic Dyes
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ER Tracker
ER Tracker
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Apoptosis Detection Dyes
Apoptosis Detection Dyes
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Membrane Blebbing
Membrane Blebbing
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Scramblases
Scramblases
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Propidium Iodide (PI)
Propidium Iodide (PI)
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Extracellular Signal
Extracellular Signal
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Signal Transduction
Signal Transduction
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Glucose Transporters
Glucose Transporters
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Pentose Phosphate Pathway
Pentose Phosphate Pathway
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NADPH vs. NADH
NADPH vs. NADH
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Oxidative Phase (Pentose Phosphate Pathway)
Oxidative Phase (Pentose Phosphate Pathway)
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Glucose-6-Phosphate Dehydrogenase Deficiency
Glucose-6-Phosphate Dehydrogenase Deficiency
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Study Notes
Biochemistry Notes - Lecture 1
- Membranes are composed of phospholipids
- Phospholipids interact with each other and the aqueous compartments to form a bilayer membrane
- The fluid mosaic model describes the structure of cell membranes
- Cholesterol is a component of cell membranes that provides stability
- Diffusion within membranes affects lipids and proteins
- The lipid bilayer is a fragile barrier
- Interactions between membrane components maintain its integrity
- Components of the cell membranes include:
- Phospholipids
- Cholesterol
- Proteins
- Glycoproteins
- Glycolipids
- Phospholipids have 2 fatty acid chains, glycerol, and a highly polar or charged group
- They are amphipathic
- Sterols, such as cholesterol, have 4 ring structures at the centre and saturated hydrocarbon tails
- Cholesterol is generated in the liver from acetyl-CoA
- Cholesterol is made in the smooth endoplasmic reticulum of hepatocytes
- Hepatocytes produce cholesterol→ bile→ large intestine→ reabsorbed
- Cholesterol is lipophilic
- Cholesterol is essential for the synthesis of bile acids, without bile acids there is no breakdown of fatty acids
- Bile acids are amphiphilic and enable the solubilization of dietary fats (emulsification)
- Emulsification is important for the uptake of dietary fats
- Bile acids increase the surface area for lipid digestion
Biochemistry Notes - Lecture 1, continued
- Lipid-soluble hormones include: cortisol, aldosterone, testosterone, T3, and T4
- Hormones bind to receptors and activate genes; this takes more time compared to activating a protein.
- Bile acids are synthesized from cholesterol
- Bile acids are essential for lipid digestion and increase the solubility of lipids
- Bile acids increase the surface area for lipid digestion
- Cholesterol is used to produce bile acids
- Bile acids enable digestion of lipids by solubilizing the fats into the small intestines
- Primary bile acids include: cholic acid, chenodeoxycholic acid, deoxycholic acid, and lithocholic acid
- Primary bile acids are produced by the liver, usually conjugated in the body, and modified in the gut by bacteria
- Secondary bile acids are less toxic, being modified by conjugation, often linking to molecules with waste or toxic products.
- Bile is crucial for lipid digestion, making the fats more water soluble
Biochemistry Notes - Lecture 1, continued
- Fatty acids are commonly found, trans fatty acids are obtained from diet
- Phospholipid tails can be saturated or unsaturated
Biochemistry Notes - Lecture 2
- Cholesterol is a component of lipoproteins, which transport lipids in the body
- Lipoproteins contain a hydrophobic core (triacylglycerol and cholesterol esters) and an amphipathic coat of phospholipids and apolipoproteins
- Chylomicrons, VLDL, IDL, and LDL are lipoproteins that carry lipids
- LDL returns to the liver to deliver cholesterol to other tissues that need it
- Apolipoproteins act as signals for cellular uptake and metabolism
- LDL recycles to the liver for metabolism and cholesterol use
- Cholesterol is stored in adipocytes and can be metabolized in cells
Biochemistry Notes - Lecture 2, continued
- Metabolized fatty acids are converted to acetyl CoA, which enters the Krebs cycle or can be stored if in excess
- Fatty acids can be converted into chylomicrons to travel through the body
- Phospholipids are amphipathic molecules that are involved in carrying lipids
- Lipoproteins are important for carrying lipids through the body
Biochemistry Notes - Lecture 3
- Signal transduction involves extracellular signals like hormones binding to receptors triggering intracellular changes (including changes in cell shape or activation of enzymes), allowing a cell-to-cell communication
- Signal molecules diffuse to receptors nearby
- Examples of signaling pathways include acetyl choline, glucose, insulin, and apoptosis
Biochemistry Notes - Lecture 4
- Lipids and proteins are the major membrane components
- Membrane asymmetry refers to the different compositions and orientations of lipids on each leaflet within the membrane
- Cholesterol, flippase, floppase, and scramblase are involved in maintaining membrane asymmetry and composition
Biochemistry Notes - Lecture 5
- Lipids can be hydrophobic (tails) or hydrophilic (heads)
- Lipids form a bilayer structure with the hydrophobic tails in the inside
- Protein is also an integral part of the membrane
Biochemistry Notes - Lecture 6
- Various factors have the potential to affect the rate of diffusion through a membrane
- The way in which lipid molecules are organized directly affects the proteins that are associated with the membrane
Biochemistry Notes - Lecture 7
- There are different types of membrane proteins that can be directly associated with the membrane (integrated into)
- Membrane proteins have several functions that depend on their types
- There are multiple pathways for molecules to enter a membrane
- Cholesterol, and other factors like temperature affect the fluidity of the membrane
Biochemistry Notes - Lecture 8
- Glycolysis is a metabolic pathway used to breakdown glucose
- The pentose phosphate pathway is a pathway used to produce NADPH and phosphorylated sugars
- NADPH is an important electron carrier in biosynthetic reactions
Biochemistry Notes - Lecture 9
- The Pentose Phosphate pathway plays an important role in cell reactions, and can be used for various purposes depending on the needs of the cell.
Biochemistry Notes - Lecture 10, continued
- NADPH and NADH are similar but play different roles.
- The structure and location within the cells can be different
- Different forms of glucose can be produced depending on the cellular need
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