Biochemistry Lecture 1: Cell Membrane Structure

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Questions and Answers

What is the primary role of BAR domain proteins in vesicle budding?

  • They infuse energy into the vesicle release process.
  • They shape the plasma membrane to facilitate clathrin recruitment. (correct)
  • They initiate the formation of clathrin-coated vesicles.
  • They directly pinch off the vesicle from the membrane.

Dynamin requires GTP to induce shape changes necessary for vesicle release.

True (A)

What is responsible for recruiting local assembly of actin filaments during vesicle budding?

Clathrin machinery

The crescent-shaped BAR domains interact with the lipid head groups via __________ interactions.

<p>electrostatic</p> Signup and view all the answers

Match the following components to their functions:

<p>Clathrin = Coat formation for vesicles Dynamin = Vesicle release BAR domain proteins = Membrane shaping Actin filaments = Providing tension during vesicle pinching</p> Signup and view all the answers

Which of the following factors contribute to increased insulin resistance?

<p>All of the above (D)</p> Signup and view all the answers

What is the role of lipid rafts in receptor function?

<p>To keep components of the receptors together for ligand binding (D)</p> Signup and view all the answers

Insulin is commonly used in treating type 2 diabetes.

<p>False (B)</p> Signup and view all the answers

What effect does GLP-1 have on insulin release?

<p>Increases insulin release</p> Signup and view all the answers

G protein-coupled receptors have a single transmembrane domain.

<p>False (B)</p> Signup and view all the answers

Blocking the Na channel in renal glucose handling leads to more glucose being in the ______.

<p>urine</p> Signup and view all the answers

What is the function of secondary messengers like cyclic AMP in signal transduction?

<p>To activate protein kinases</p> Signup and view all the answers

The ________ subunit of G protein-coupled receptors binds to GDP or GTP.

<p>alpha</p> Signup and view all the answers

Match the following diabetes treatments to their effects:

<p>Incretin drugs = Increase insulin release and aid in weight loss Statin drugs = Reduce cardiovascular risk GLP-1 = Improves insulin sensitivity and creates a feeling of fullness Na channel blockers = Increase glucose in urine</p> Signup and view all the answers

Match the following receptor types with their descriptions:

<p>Channel linked receptors = Allow ions to pass through the membrane Enzyme linked receptors = Transmit signals inside the cell through enzyme activity G protein-coupled receptors = Activate intracellular signaling through G proteins Ion channel receptors = Open to allow ion movement in response to a ligand</p> Signup and view all the answers

What is the primary role of NADPH?

<p>Biosynthetic reactions (D)</p> Signup and view all the answers

Glycolysis is an anabolic pathway that builds molecules.

<p>False (B)</p> Signup and view all the answers

What are the two phases of the Pentose Phosphate Pathway?

<p>Oxidative Phase and Nonoxidative Phase</p> Signup and view all the answers

Glucose is largely obtained from the _____?

<p>diet</p> Signup and view all the answers

Match the following glucose transporters with their characteristics:

<p>Glucose transporter 1 = Transport of glucose in the brain Sodium-glucose cotransporter = Active transport of glucose with sodium Glucose transporter 2 = Facilitates glucose transport in the liver Glucose transporter 4 = Insulin-responsive glucose uptake in muscles and fat cells</p> Signup and view all the answers

Which type of signaling involves signals released into the extracellular space?

<p>Paracrine signaling (C)</p> Signup and view all the answers

Endocrine signaling occurs in a fixed space and has regulatory effects.

<p>False (B)</p> Signup and view all the answers

What is the primary purpose of secondary messengers in cell signaling?

<p>To interpret signals and facilitate signaling cascades.</p> Signup and view all the answers

In signaling cascades, __________ removes the phosphate from proteins.

<p>phosphatase</p> Signup and view all the answers

Match the type of cell communication with its description:

<p>Contact-dependent = Requires direct interaction between cells Endocrine = Signals travel long distances in the bloodstream Paracrine = Signals affect nearby cells Neurotransmitter = Signals bind to receptors on adjacent cells</p> Signup and view all the answers

Which of the following outcomes can cell communication affect?

<p>All of the above (D)</p> Signup and view all the answers

The signaling cascade can only activate proteins in the cytoplasm.

<p>False (B)</p> Signup and view all the answers

What role do kinases play in the phosphorylation process?

<p>Kinases add phosphate groups to proteins.</p> Signup and view all the answers

What happens to the membrane during apoptosis?

<p>The membrane starts blebbing and becomes more fluid (D)</p> Signup and view all the answers

During early apoptosis, sphingomyelin translocates from the outer membrane to the inner membrane.

<p>False (B)</p> Signup and view all the answers

What role do ER trackers play in studying cell apoptosis?

<p>They help in quantifying the number of vesicles generated.</p> Signup and view all the answers

Propidium iodide enters the cell when apoptosis is occurring, and its presence indicates _____ cell viability.

<p>decreased</p> Signup and view all the answers

Match the following signaling pathways with their functions:

<p>Acetylcholine = Synapse transmission Insulin = Glucose metabolism Endocrine signaling = Hormonal signal release Apoptosis signaling = Cell death regulation</p> Signup and view all the answers

What triggers the activation of scramblases during apoptosis?

<p>Release of Ca from the ER (B)</p> Signup and view all the answers

Flow cytometry provides higher spatial resolution than confocal microscopy.

<p>False (B)</p> Signup and view all the answers

What is one advantage of using flow cytometry for studying cell populations?

<p>It allows for rapid quantification of multiple parameters in large cell populations.</p> Signup and view all the answers

Flashcards

Lipid Rafts

Specialized membrane microdomains enriched in cholesterol and sphingolipids, providing a platform for clustering receptors and signaling components.

Adaptor Proteins

Proteins that link different signaling molecules together, facilitating signal transmission.

Scaffolding Proteins

Proteins that provide a framework for organizing signaling molecules, increasing efficiency and specificity of signal transduction.

Channel-Linked Receptors

Receptors that directly regulate the flow of ions across the cell membrane, allowing for rapid changes in membrane potential.

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G Protein-Coupled Receptors

Receptors that activate G proteins, initiating a signaling cascade within the cell.

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BAR domains

Crescent-shaped protein domains that bend membranes using electrostatic interactions with lipid head groups.

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Clathrin's role in vesicle formation

Clathrin proteins assemble into a coat that helps shape the plasma membrane into a bud for forming a vesicle. This process is aided by BAR domain proteins, which help shape the membrane.

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Dynamin's function

Dynamin is a GTPase protein that helps pinch off vesicle buds by constricting the neck of the budding vesicle. It uses the energy from GTP hydrolysis to undergo a shape change.

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What is the importance of the BAR domain in clathrin-mediated endocytosis?

BAR domains are crucial for shaping the plasma membrane during clathrin-mediated endocytosis to create the bud that will eventually become a vesicle. They help by interacting with lipids and other proteins involved in the process.

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Amphiphilic helices

Helical regions of proteins that have both hydrophilic and hydrophobic segments, allowing them to insert into lipid bilayers and influence membrane bending.

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Contact-dependent signaling

Signal transmission happens when cells directly touch each other, like T-cell receptors binding to B-cell receptors during immune response.

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Paracrine signaling

Short-range signaling where molecules secreted by a cell act on nearby cells, influencing their behavior.

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Endocrine signaling

Long-range signaling where hormones are released into the bloodstream, reaching distant target cells and organs.

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Phosphorylation

Adding a phosphate group to a protein, often done by kinases.

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Kinase

An enzyme that adds a phosphate group to a protein.

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GEF (Guanine nucleotide Exchange Factor)

An enzyme that removes GDP from a protein and allows GTP to bind. This usually causes a conformational change.

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Signaling cascade

A chain of events in a cell where one signal activates another, triggering a series of events.

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Phosphatase

An enzyme that removes a phosphate group from a protein.

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Insulin Resistance

The body's cells don't respond properly to insulin, leading to high blood sugar levels. This is a key characteristic of type 2 diabetes.

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Multiple Risk Factor Lowering

Treatment strategies that aim to reduce multiple risk factors associated with heart disease and diabetes, like blood pressure, cholesterol, and glucose levels.

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Incretin Effect

The increased insulin release triggered by the presence of food in the gut, compared to when glucose is given intravenously.

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GLP-1

A peptide produced by the gut lining that enhances insulin release, slows down food emptying, improves insulin sensitivity, and promotes feelings of fullness.

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Normal Renal Glucose Handling

Glucose is filtered in the kidneys but normally reabsorbed back into the bloodstream. Drugs targeting this reabsorption can lead to increased glucose excretion.

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Lipophilic Dyes

Dyes that dissolve in lipids and embed themselves into cell membranes, allowing visualization of membrane changes over time.

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ER Tracker

A dye or fluorescent protein that binds to the endoplasmic reticulum (ER), used to track the formation and movement of ER-derived vesicles.

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Apoptosis Detection Dyes

Dyes that specifically bind to cells undergoing programmed cell death (apoptosis), allowing visualization of the apoptosis process.

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Membrane Blebbing

The formation of small, irregular bulges on the cell membrane during the early stages of apoptosis.

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Scramblases

Membrane proteins that move phospholipids randomly between the inner and outer leaflets of the cell membrane during apoptosis.

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Propidium Iodide (PI)

A dye that only enters cells with damaged membranes, used to distinguish between healthy and apoptotic cells.

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Extracellular Signal

A molecule released by one cell that travels to another cell to trigger a response.

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Signal Transduction

The process by which a cell receives an extracellular signal and converts it into a specific response.

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Glucose Transporters

Proteins embedded in cell membranes that facilitate the passage of glucose into cells.

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Pentose Phosphate Pathway

A metabolic pathway that produces NADPH and ribose-5-phosphate, used in various biosynthetic reactions and for reducing oxidative stress.

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NADPH vs. NADH

Both are electron carriers, but differ in function. NADPH is used in biosynthesis and reducing oxidative stress, while NADH is involved in ATP production.

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Oxidative Phase (Pentose Phosphate Pathway)

The first stage of the pentose phosphate pathway, where irreversible oxidative reactions occur, with glucose-6-phosphate dehydrogenase as a key enzyme.

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Glucose-6-Phosphate Dehydrogenase Deficiency

A genetic disorder where the enzyme glucose-6-phosphate dehydrogenase is deficient, leading to decreased NADPH production and increased oxidative stress susceptibility.

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Study Notes

Biochemistry Notes - Lecture 1

  • Membranes are composed of phospholipids
  • Phospholipids interact with each other and the aqueous compartments to form a bilayer membrane
  • The fluid mosaic model describes the structure of cell membranes
  • Cholesterol is a component of cell membranes that provides stability
  • Diffusion within membranes affects lipids and proteins
  • The lipid bilayer is a fragile barrier
  • Interactions between membrane components maintain its integrity
  • Components of the cell membranes include:
    • Phospholipids
    • Cholesterol
    • Proteins
    • Glycoproteins
    • Glycolipids
  • Phospholipids have 2 fatty acid chains, glycerol, and a highly polar or charged group
  • They are amphipathic
  • Sterols, such as cholesterol, have 4 ring structures at the centre and saturated hydrocarbon tails
  • Cholesterol is generated in the liver from acetyl-CoA
  • Cholesterol is made in the smooth endoplasmic reticulum of hepatocytes
  • Hepatocytes produce cholesterol→ bile→ large intestine→ reabsorbed
  • Cholesterol is lipophilic
  • Cholesterol is essential for the synthesis of bile acids, without bile acids there is no breakdown of fatty acids
  • Bile acids are amphiphilic and enable the solubilization of dietary fats (emulsification)
  • Emulsification is important for the uptake of dietary fats
  • Bile acids increase the surface area for lipid digestion

Biochemistry Notes - Lecture 1, continued

  • Lipid-soluble hormones include: cortisol, aldosterone, testosterone, T3, and T4
  • Hormones bind to receptors and activate genes; this takes more time compared to activating a protein.
  • Bile acids are synthesized from cholesterol
  • Bile acids are essential for lipid digestion and increase the solubility of lipids
  • Bile acids increase the surface area for lipid digestion
  • Cholesterol is used to produce bile acids
  • Bile acids enable digestion of lipids by solubilizing the fats into the small intestines
  • Primary bile acids include: cholic acid, chenodeoxycholic acid, deoxycholic acid, and lithocholic acid
  • Primary bile acids are produced by the liver, usually conjugated in the body, and modified in the gut by bacteria
  • Secondary bile acids are less toxic, being modified by conjugation, often linking to molecules with waste or toxic products.
  • Bile is crucial for lipid digestion, making the fats more water soluble

Biochemistry Notes - Lecture 1, continued

  • Fatty acids are commonly found, trans fatty acids are obtained from diet
  • Phospholipid tails can be saturated or unsaturated

Biochemistry Notes - Lecture 2

  • Cholesterol is a component of lipoproteins, which transport lipids in the body
  • Lipoproteins contain a hydrophobic core (triacylglycerol and cholesterol esters) and an amphipathic coat of phospholipids and apolipoproteins
  • Chylomicrons, VLDL, IDL, and LDL are lipoproteins that carry lipids
  • LDL returns to the liver to deliver cholesterol to other tissues that need it
  • Apolipoproteins act as signals for cellular uptake and metabolism
  • LDL recycles to the liver for metabolism and cholesterol use
  • Cholesterol is stored in adipocytes and can be metabolized in cells

Biochemistry Notes - Lecture 2, continued

  • Metabolized fatty acids are converted to acetyl CoA, which enters the Krebs cycle or can be stored if in excess
  • Fatty acids can be converted into chylomicrons to travel through the body
  • Phospholipids are amphipathic molecules that are involved in carrying lipids
  • Lipoproteins are important for carrying lipids through the body

Biochemistry Notes - Lecture 3

  • Signal transduction involves extracellular signals like hormones binding to receptors triggering intracellular changes (including changes in cell shape or activation of enzymes), allowing a cell-to-cell communication
  • Signal molecules diffuse to receptors nearby
  • Examples of signaling pathways include acetyl choline, glucose, insulin, and apoptosis

Biochemistry Notes - Lecture 4

  • Lipids and proteins are the major membrane components
  • Membrane asymmetry refers to the different compositions and orientations of lipids on each leaflet within the membrane
  • Cholesterol, flippase, floppase, and scramblase are involved in maintaining membrane asymmetry and composition

Biochemistry Notes - Lecture 5

  • Lipids can be hydrophobic (tails) or hydrophilic (heads)
  • Lipids form a bilayer structure with the hydrophobic tails in the inside
  • Protein is also an integral part of the membrane

Biochemistry Notes - Lecture 6

  • Various factors have the potential to affect the rate of diffusion through a membrane
  • The way in which lipid molecules are organized directly affects the proteins that are associated with the membrane

Biochemistry Notes - Lecture 7

  • There are different types of membrane proteins that can be directly associated with the membrane (integrated into)
  • Membrane proteins have several functions that depend on their types
  • There are multiple pathways for molecules to enter a membrane
  • Cholesterol, and other factors like temperature affect the fluidity of the membrane

Biochemistry Notes - Lecture 8

  • Glycolysis is a metabolic pathway used to breakdown glucose
  • The pentose phosphate pathway is a pathway used to produce NADPH and phosphorylated sugars
  • NADPH is an important electron carrier in biosynthetic reactions

Biochemistry Notes - Lecture 9

  • The Pentose Phosphate pathway plays an important role in cell reactions, and can be used for various purposes depending on the needs of the cell.

Biochemistry Notes - Lecture 10, continued

  • NADPH and NADH are similar but play different roles.
  • The structure and location within the cells can be different
  • Different forms of glucose can be produced depending on the cellular need

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