Biochemistry Chapter on Lipids
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Questions and Answers

What is the primary structural characteristic of fatty acids?

  • They contain a single carbon atom with no functional groups.
  • They have a hydrophilic carboxylate group attached to a hydrocarbon chain. (correct)
  • They are composed entirely of carbon and oxygen without any hydrogen.
  • They contain a hydrophobic phosphate group.
  • What distinguishes saturated fatty acids from unsaturated fatty acids?

  • Saturated fatty acids contain a functional group known as a phospholipid head.
  • Saturated fatty acids have carbon atoms fully bonded with hydrogen. (correct)
  • Saturated fatty acids have a longer hydrocarbon chain.
  • Saturated fatty acids have at least one double bond in their structure.
  • Which of the following describes the term 'amphipathic' in relation to membrane lipids?

  • They have both hydrophilic and hydrophobic regions. (correct)
  • They are soluble in water and do not interact with hydrophobic substances.
  • They are completely hydrophobic and do not form structures in water.
  • They are primarily composed of sugars and proteins.
  • Heat production from fat oxidation mainly occurs in which type of adipose tissue?

    <p>Brown fat, which specializes in thermogenesis. (D)</p> Signup and view all the answers

    What is the primary role of fats, or triacylglycerols, in animals?

    <p>They act as long-term energy storage molecules. (B)</p> Signup and view all the answers

    Which statement about the structure of naturally occurring fatty acids is correct?

    <p>They typically have an even number of carbon atoms. (A)</p> Signup and view all the answers

    What are adipocytes primarily responsible for in the body?

    <p>Storing energy in the form of fat. (A)</p> Signup and view all the answers

    What is NOT a function of fat storage in animals?

    <p>Providing chemical signaling through steroids. (C)</p> Signup and view all the answers

    What is true about the stereochemical numbering system in glycerophospholipids?

    <p>The pro-S carbon is assigned as C1. (A)</p> Signup and view all the answers

    Which enzyme deficiency is related to the accumulation of GM2 ganglioside in Tay-Sachs disease?

    <p>Hexosaminidase A (D)</p> Signup and view all the answers

    In which type of membrane lipid is the fatty acid linked via an amide bond?

    <p>Ceramides (B)</p> Signup and view all the answers

    How does cholesterol affect membrane fluidity?

    <p>It decreases fluidity by reducing unsaturated bonds. (D)</p> Signup and view all the answers

    Which statement about peripheral membrane proteins is correct?

    <p>They are associated with one side of the bilayer. (A)</p> Signup and view all the answers

    What distinguishes glycosphingolipids from glycerophospholipids?

    <p>Glycosphingolipids possess a hydrophobic tail derived from sphingosine. (C)</p> Signup and view all the answers

    What is the significance of the fluid mosaic model proposed by S.J. Singer and G.L. Nicolson?

    <p>It portrays membranes as a mixture of lipids and proteins that can move fluidly. (B)</p> Signup and view all the answers

    Which molecular structure is essential to form ceramides in sphingolipid metabolism?

    <p>Sphingosine (B)</p> Signup and view all the answers

    What occurs during the gel–liquid crystalline phase transition in a synthetic lipid bilayer?

    <p>The movement of chains becomes more dynamic. (B)</p> Signup and view all the answers

    How does the lipid composition of a membrane affect its transition temperature (Tm)?

    <p>Longer saturated tails tend to increase the Tm. (A)</p> Signup and view all the answers

    What effect does the addition of 20 mol % cholesterol have on the transition temperature of a membrane?

    <p>It broadens the transition without changing the transition temperature. (B)</p> Signup and view all the answers

    What is the typical thickness of a cell membrane?

    <p>6 nm (D)</p> Signup and view all the answers

    What characterizes the semi-fluid liquid crystalline state of biological membranes under physiological conditions?

    <p>Lipids can move more freely than in a solid state. (A)</p> Signup and view all the answers

    What happens to the leaflets of a membrane concerning lipid composition?

    <p>Outer and inner leaflets usually differ in lipid composition. (D)</p> Signup and view all the answers

    During the experimental demonstration of membrane fluidity, what occurs when cells with marked surface membrane proteins fuse?

    <p>The proteins gradually mix over the fused surface. (C)</p> Signup and view all the answers

    What phase forms at cholesterol-to-phospholipid (C:PL) mole ratios above 0.9:1?

    <p>Two separate lamellar phases. (B)</p> Signup and view all the answers

    What is the primary function of bacteriorhodopsin in bacterial cells?

    <p>Functions as a light driven proton pump (B)</p> Signup and view all the answers

    Which structural feature characterizes glycophorin A?

    <p>A single, highly hydrophobic transmembrane helix (C)</p> Signup and view all the answers

    What role does the translocon play in membrane protein insertion?

    <p>It facilitates the passage of protein segments through the lipid bilayer (B)</p> Signup and view all the answers

    What does the 'inside positive' rule refer to in membrane protein orientation?

    <p>The alignment of transmembrane helices with their ends in the cytoplasm (A)</p> Signup and view all the answers

    Which lipid molecule is primarily associated with cell membrane stability and signaling?

    <p>Phosphatidylinositol (D)</p> Signup and view all the answers

    What structural characteristic is true for the transmembrane helices during their synthesis?

    <p>They insert into the membrane while still being synthesized (C)</p> Signup and view all the answers

    What is identified as a feature of both the 'closed' and 'open' conformations of the SecY translocon?

    <p>It allows nascent peptides to access the membrane core (A)</p> Signup and view all the answers

    What type of residues primarily accumulates in cytosolic loops of integral membrane proteins?

    <p>Small, polar residues (A)</p> Signup and view all the answers

    What is the primary function of aquaporins in eukaryotic cells?

    <p>Facilitating rapid water transport (C)</p> Signup and view all the answers

    What characteristic structure do aquaporins contain that is critical for their function?

    <p>Tetramer of identical monomers (B)</p> Signup and view all the answers

    In the structure of gramicidin A, what conformation do the molecules adopt to form an ion pore?

    <p>Helical conformation (C)</p> Signup and view all the answers

    Which feature of the aquaporin water channel contributes to ion selectivity?

    <p>The geometry of chelating groups in ion channels (D)</p> Signup and view all the answers

    What specific motif is conserved in the helices of aquaporins?

    <p>N-terminal Asn-Pro-Ala (A)</p> Signup and view all the answers

    What element of the aquaporin structure limits the passage of H3O+ ions?

    <p>Electrostatic repulsion due to dipoles (C)</p> Signup and view all the answers

    What advantage do cells gain from using aquaporins for water transport over passive diffusion?

    <p>Faster transport of water molecules (D)</p> Signup and view all the answers

    Which characteristic of the heptamer structure of a-hemolysin distinguishes its dimensions?

    <p>10 nm in diameter and 10 nm in length along the sevenfold axis (A)</p> Signup and view all the answers

    What initiates the formation of a clathrin-coated vesicle?

    <p>Formation of a coated pit (D)</p> Signup and view all the answers

    Which component primarily determines the resting potential of a nerve fiber?

    <p>Concentration of K+ ions (B)</p> Signup and view all the answers

    What is the primary role of Schwann cells in neural transmission?

    <p>To insulate the axon with myelin (B)</p> Signup and view all the answers

    What occurs during the action potential generation?

    <p>Voltage-gated channels open allowing ion flow (D)</p> Signup and view all the answers

    What characterizes the nodes of Ranvier along an axon?

    <p>They contain numerous Na+ ion channels (C)</p> Signup and view all the answers

    During the process of bulk transport across membranes, which vesicle formation is associated with cholesterol?

    <p>Caveolae (A)</p> Signup and view all the answers

    How is electrical impulse conduction generally initiated in neurons?

    <p>Through changes in membrane potential (A)</p> Signup and view all the answers

    What does the resting axon voltage typically read, assuming specific ion concentrations?

    <p>60 mV (C)</p> Signup and view all the answers

    Flashcards

    What are lipids?

    Lipids are a class of biological molecules that are insoluble in water but can form water-soluble structures like micelles, vesicles, and bilayers.

    What are fatty acids?

    Fatty acids are the simplest lipids, composed of a hydrophilic carboxylate group attached to a hydrophobic hydrocarbon chain.

    What are saturated fatty acids?

    Saturated fatty acids have carbons in their tail that are fully saturated with hydrogen atoms. They are typically straight and solid at room temperature.

    What are unsaturated fatty acids?

    Unsaturated fatty acids have one or more double bonds in their tail. They are typically liquid at room temperature.

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    What makes membrane lipids special?

    Membrane lipids are amphipathic, meaning they have both hydrophilic and hydrophobic parts. This allows them to form structures like micelles and bilayers in water.

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    What are triacylglycerols?

    Triacylglycerols are esters of fatty acids and glycerol. They are the major long-term energy storage molecules in many organisms.

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    What are the functions of fat storage in animals?

    Fat storage in animals serves three primary functions: energy production, heat production, and insulation.

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    What are adipocytes?

    Adipocytes are specialized cells responsible for storing fat in animals. They are found in adipose tissue.

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    Glycerol's Prochirality

    Glycerol is a molecule that can exist in two mirror-image forms, but in its natural state, it is neither. Phosphorylation of one of its CH2OH groups creates a chiral molecule, resulting in either the R or S enantiomer of glycerol phosphate.

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    sn-Glycerol-3-Phosphate

    The sn (stereochemical numbering) system assigns C1 to the pro-S carbon of glycerol. All glycerophospholipids are derivatives of sn-glycerol-3-phosphate.

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    Sphingolipids

    Sphingolipids are a class of lipids derived from sphingosine, an amino alcohol with a long-chain hydrophobic tail. They are found in cell membranes and play crucial roles in cell signaling and recognition.

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    Ceramides

    Ceramides are a type of sphingolipid formed when a fatty acid is linked to the amino group (NH2) of sphingosine through an amide bond. This structure gives them hydrophobic and hydrophilic properties.

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    Sphingomyelin

    Sphingomyelin is a type of sphingolipid where a phosphocholine group is attached to the C-3 hydroxyl of ceramide. It is a major component of myelin sheaths, which insulate nerve cells.

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    Glycosphingolipids

    Glycosphingolipids are sphingolipids with sugar groups attached to the C-1 hydroxyl of ceramide. They play a vital role in cell recognition and signaling.

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    Monogalactosyl Diglyceride

    Monogalactosyl diglyceride is a type of glycoglycerolipid found in plant and bacterial membranes. It has a single galactose sugar attached to a diglyceride molecule.

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    Cholesterol and Membrane Fluidity

    Cholesterol is a type of lipid that plays a vital role in regulating membrane fluidity. Its rigid structure helps maintain the structural integrity of cell membranes.

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    Aquaporin

    A pore-forming protein that allows the rapid transport of water across cell membranes.

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    NPA motif

    A conserved sequence found in aquaporins that is involved in water passage.

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    Aquaporin structure

    Aquaporins function as tetramers, meaning they are composed of four identical monomers.

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    Central Restriction

    The narrowest part of the aquaporin channel, where the two NPA-containing helices meet.

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    Ion Selectivity

    Aquaporins prevent the passage of protons (H+) due to the electrostatic barrier created by charged amino acids.

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    Rapid Water Transport

    The inherent permeability of membranes to water is not sufficient to support rapid transport in many cells.

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    Examples of Cells with Aquaporins

    Erythrocytes, secretory cells, and epithelial cells all require rapid water transport for their function.

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    Gramicidin A

    A helical antibiotic that forms a pore through cell membranes, allowing ions to cross.

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    What is phosphatidylcholine (PC)?

    A type of phospholipid with choline as its head group. Commonly found in cell membranes.

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    What is phosphatidylethanolamine (PE)?

    A type of phospholipid with ethanolamine as its head group. Important for membrane structure and signaling.

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    What is phosphatidylserine (PS)?

    A type of phospholipid with serine as its head group. Found in the inner leaflet of cell membranes.

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    What is phosphatidylinositol (PI)?

    A type of phospholipid with inositol as its head group. Plays a crucial role in cell signaling pathways.

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    What is sphingomyelin (SP)?

    A type of sphingolipid with phosphocholine as its head group. Abundant in the myelin sheath of nerve cells.

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    What is bacteriorhodopsin?

    A light-driven proton pump found in certain bacteria. It is a transmembrane protein with seven helices spanning the membrane.

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    What is glycophorin A?

    A protein that was the first integral membrane protein to be sequenced. It has a single transmembrane helix and carries oligosaccharides.

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    What is the translocon?

    A protein channel that facilitates the insertion of integral membrane proteins into the membrane bilayer.

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    What is the cell membrane?

    The cell membrane is a thin, flexible barrier that encloses the cell and regulates what enters and exits. It consists of a phospholipid bilayer with embedded proteins.

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    What are integral membrane proteins?

    These are proteins embedded within the phospholipid bilayer of the cell membrane, playing various roles in functions like transport, signaling, and anchoring.

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    What is the phospholipid bilayer?

    The cell membrane is composed of two layers of phospholipid molecules arranged with their hydrophilic heads facing outwards and their hydrophobic tails facing inwards.

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    What is the fluid mosaic model?

    The fluid mosaic model describes the cell membrane as a dynamic structure with a flexible phospholipid bilayer and embedded proteins that can move laterally.

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    How does temperature affect membrane fluidity?

    The change in temperature affects the fluidity of the membrane. When the temperature is lowered, the phospholipid tails become more packed, making the membrane more rigid. Conversely, increasing the temperature leads to increased fluidity.

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    What role does cholesterol play in membrane fluidity?

    Cholesterol is embedded within the phospholipid bilayer of the membrane and plays a role in maintaining fluidity and stability.

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    How is the cell membrane asymmetric?

    The two layers of the membrane are often asymmetrical, meaning they have different lipid compositions. This asymmetry is important for maintaining cell function and signaling.

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    What is the transition temperature (Tm) for a membrane?

    The transition temperature (Tm) for a membrane is the temperature at which it changes from a gel-like state to a liquid-like state. It is influenced by factors such as the length and saturation of fatty acid tails in the phospholipids.

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    Sugar Phosphorylation

    Sugars are modified by adding a phosphate group either during transport across the membrane or immediately upon entering the cell's cytosol.

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    Specific Transport Processes

    The process of moving substances across cell membranes involves specialized transport systems that ensure specific directions and movement of molecules.

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    Bulk Transport

    A mechanism for transporting large molecules or groups of molecules across cell membranes. This process involves the formation of small, membrane-bound sacs called vesicles. Two types of vesicle formation involve clathrin and caveolae.

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    Clathrin-coated Vesicle Formation

    Clathrin-coated vesicles are formed by invagination of the plasma membrane, where a coated pit emerges, buds off, and ultimately forms a free vesicle.

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    Caveola Formation

    Caveolae formation occurs at specific sites within the cell membrane, rich in cholesterol and sphingolipids. This process involves the insertion of caveolin protein, which causes the membrane to fold, forming a pouch that ultimately buds off as a caveola.

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    Electrical Impulses in Neurons

    Neurons use changes in membrane potential to transmit electrical impulses. These changes occur in specific regions of the neuron's plasma membrane.

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    Axon and Synaptic Termini

    The axon is a long, slender projection of a neuron that transmits signals away from the cell body. The axon terminates in synaptic termini, which are specialized structures responsible for communication with other neurons or muscle cells.

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    Myelin Sheath

    Schwann cells are specialized cells that wrap around the axon, forming a myelin sheath. Myelin is an insulating layer that speeds up the conduction of electrical signals along the axon. The gaps between Schwann cells are called nodes of Ranvier.

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    Study Notes

    Biochemistry I - CHM219

    • Course instructor: Assist. Prof. Dr. Esra Aydemir
    • Topic: Lipids, Membranes, and Cellular Transport

    Lipids

    • Lipid molecules tend to be insoluble in water but can associate to form water-soluble structures (micelles, vesicles, bilayers)
    • Amphipathic lipids have a hydrophilic (polar) head group and a hydrophobic (nonpolar) tail.
    • Fatty acids are the simplest lipids, with a hydrophilic carboxylate group at one end and a hydrocarbon chain at the other. Fatty acids typically have 12 to 24 carbons.
    • Saturated fatty acids have single bonds between carbons, while unsaturated fatty acids have one or more double bonds. Examples include stearic acid (saturated, C18) and oleic acid (unsaturated, C18).
    • Fatty acids can be ionized (e.g., stearate ion, oleate ion).
    • Membrane lipids are amphipathic.
    • Most naturally occurring fatty acids contain an even number of carbon atoms.
    • Unsaturated fatty acids usually have cis configuration.
    • Fats (triacylglycerols) are triesters of fatty acids and glycerol and are the major energy storage molecules in many organisms.

    Membrane Structure and Properties

    • Cell membranes are primarily composed of a phospholipid bilayer.
    • Phospholipids are amphipathic.
    • The major classes of membrane-forming lipids are glycerophospholipids, sphingolipids, glycosphingolipids, and glycoglycerolipids.
    • Membrane structure is characterized by a hydrophobic core and hydrophilic head groups facing outward.
    • The bilayer is about 6 nm thick.
    • Cholesterol is a component of many animal membranes, influencing membrane fluidity.
    • Membrane proteins (peripheral, integral, and glycoproteins).

    Transport Across Membranes

    • The rate of nonmediated transport is proportional to the diffusion and partition coefficients and inversely proportional to membrane thickness.
    • Facilitated transport (pores, permeases, carriers) increases the rate of diffusion significantly, and often depends on concentration differences.
    • Cotransport: coupled transport of molecules (e.g., sodium and glucose).
    • Transport by modification: a substance that has diffused through a membrane is modified so that it cannot return (e.g., phosphorylation of sugars).
    • Active transport moves substances against a concentration gradient using energy from ATP hydrolysis. The Na+-K+ pump is an example of active transport.

    Excitable Membranes, Action Potentials, and Neurotransmission

    • Neurons conduct electrical impulses via membrane potential changes.
    • The resting potential is determined by permeabilities of the membrane to ions (e.g., K+ leak channels).
    • An action potential is generated and propagated by voltage-gated channels (e.g., sodium and potassium).
    • Neurotoxins can block ion channels, affecting nerve function.

    Techniques for Studying Membranes

    • Electron microscopy (EM) is important for visualizing membrane structure within cells.
    • Freeze-fracture technique allows observation of membrane bilayer leaflets.
    • Vesicles (e.g., liposomes) and bilayers can be prepared and reconstituted to study membrane functions.

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    Test your knowledge on the structural characteristics and functions of lipids, including fatty acids and their roles in biological membranes. This quiz covers various topics like saturated vs unsaturated fats, adipocytes, and the functions of membrane lipids. Ideal for students studying biochemistry or related fields.

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