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Questions and Answers
Which pathway is NOT utilized in anaerobic respiration?
Which pathway is NOT utilized in anaerobic respiration?
What is the final electron acceptor in aerobic respiration?
What is the final electron acceptor in aerobic respiration?
Which statement accurately describes fermentation?
Which statement accurately describes fermentation?
Why does anaerobic respiration produce less ATP than aerobic respiration?
Why does anaerobic respiration produce less ATP than aerobic respiration?
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In anaerobic respiration, what might serve as a final electron acceptor?
In anaerobic respiration, what might serve as a final electron acceptor?
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What is the main purpose of metabolism in bacteria?
What is the main purpose of metabolism in bacteria?
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Which process is associated with anabolism in bacterial metabolism?
Which process is associated with anabolism in bacterial metabolism?
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What distinguishes chemoorganotrophs among bacteria?
What distinguishes chemoorganotrophs among bacteria?
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Which transport mechanism do Gram-negative bacteria use to take in larger molecules?
Which transport mechanism do Gram-negative bacteria use to take in larger molecules?
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Which of the following is NOT a biochemical mechanism utilized by bacteria for metabolism?
Which of the following is NOT a biochemical mechanism utilized by bacteria for metabolism?
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Which of the following provides phylogenetic information on bacteria and archaea?
Which of the following provides phylogenetic information on bacteria and archaea?
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What is the primary characteristic that differentiates bacteria from other organisms?
What is the primary characteristic that differentiates bacteria from other organisms?
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Which resource provides lists of species of known prokaryotes based on published articles?
Which resource provides lists of species of known prokaryotes based on published articles?
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Which of the following does NOT specialize in the classification of fungi?
Which of the following does NOT specialize in the classification of fungi?
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What is the significance of differential staining in bacterial classification?
What is the significance of differential staining in bacterial classification?
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What type of organisms are bacteria classified as?
What type of organisms are bacteria classified as?
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Which of the following statements about bacterial DNA is true?
Which of the following statements about bacterial DNA is true?
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What distinguishes fungi from bacteria in terms of cellular structure?
What distinguishes fungi from bacteria in terms of cellular structure?
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Which type of organism is NOT considered a class of parasite?
Which type of organism is NOT considered a class of parasite?
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What characteristic of protozoa makes them particularly concerning in terms of infection?
What characteristic of protozoa makes them particularly concerning in terms of infection?
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What type of infection can fungi cause that is often mistaken for other illnesses?
What type of infection can fungi cause that is often mistaken for other illnesses?
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Which of the following is a characteristic of ectoparasites?
Which of the following is a characteristic of ectoparasites?
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What is true about helminths in their adult form?
What is true about helminths in their adult form?
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What does microbiology primarily study?
What does microbiology primarily study?
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Which area is NOT included in the course sections of microbiology?
Which area is NOT included in the course sections of microbiology?
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Which of the following topics is specifically about microbial infections?
Which of the following topics is specifically about microbial infections?
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Which type of living organisms is studied under Mycology?
Which type of living organisms is studied under Mycology?
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Which of the following is NOT a focus of laboratory diagnosis in microbiology?
Which of the following is NOT a focus of laboratory diagnosis in microbiology?
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Which of the following best describes the content of Topic 6?
Which of the following best describes the content of Topic 6?
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What is the primary purpose of studying microbial physiology?
What is the primary purpose of studying microbial physiology?
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Which microbial group is NOT mentioned in the course topics?
Which microbial group is NOT mentioned in the course topics?
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What is the primary structural component of Gram-positive bacteria's cell wall?
What is the primary structural component of Gram-positive bacteria's cell wall?
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What distinguishes Gram-negative bacteria from Gram-positive bacteria?
What distinguishes Gram-negative bacteria from Gram-positive bacteria?
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Which of the following structures is essential for the structural integrity of Gram-negative bacteria?
Which of the following structures is essential for the structural integrity of Gram-negative bacteria?
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What role do teichoic acids play in Gram-positive bacteria?
What role do teichoic acids play in Gram-positive bacteria?
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How does a capsule contribute to the virulence of bacteria?
How does a capsule contribute to the virulence of bacteria?
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What is the periplasm in Gram-negative bacteria?
What is the periplasm in Gram-negative bacteria?
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What role do lipopolysaccharides (LPS) play in bacterial ecology?
What role do lipopolysaccharides (LPS) play in bacterial ecology?
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What is the primary function of the capsule in bacteria?
What is the primary function of the capsule in bacteria?
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What is the term for the sum of biochemical reactions required for energy generation in bacteria?
What is the term for the sum of biochemical reactions required for energy generation in bacteria?
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Which of the following processes is primarily associated with catabolism in bacterial metabolism?
Which of the following processes is primarily associated with catabolism in bacterial metabolism?
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Which mechanism allows bacteria to transport larger molecules into the cell after preliminary digestion?
Which mechanism allows bacteria to transport larger molecules into the cell after preliminary digestion?
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What are the components of metabolism that are critical for energy synthesis?
What are the components of metabolism that are critical for energy synthesis?
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Which of the following topics includes the study of viruses?
Which of the following topics includes the study of viruses?
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What is the primary focus of bacteriology within the course?
What is the primary focus of bacteriology within the course?
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Which topic addresses the host-pathogen interactions during infections?
Which topic addresses the host-pathogen interactions during infections?
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Which section of microbiology would involve the study of eukaryotic parasites?
Which section of microbiology would involve the study of eukaryotic parasites?
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What does the term 'micro' in microbiology refer to?
What does the term 'micro' in microbiology refer to?
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Which topic would likely cover bacterial structure and classification techniques?
Which topic would likely cover bacterial structure and classification techniques?
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Which of the following topics does NOT include mycology?
Which of the following topics does NOT include mycology?
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Which of the following best outlines the course sections in microbiology discussed?
Which of the following best outlines the course sections in microbiology discussed?
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What does the term 'species' primarily refer to in taxonomy?
What does the term 'species' primarily refer to in taxonomy?
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Which of the following statements about the binomial system of nomenclature is true?
Which of the following statements about the binomial system of nomenclature is true?
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What defines a 'strain' in taxonomy?
What defines a 'strain' in taxonomy?
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Which of these domains is NOT part of the three-domain system of classification?
Which of these domains is NOT part of the three-domain system of classification?
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What percentage of similar rRNA do organisms within a species generally share?
What percentage of similar rRNA do organisms within a species generally share?
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Which resource is specifically designed to provide phylogenetic information on bacteria and archaea?
Which resource is specifically designed to provide phylogenetic information on bacteria and archaea?
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What characteristic distinguishes bacteria from other organisms in terms of cell structure?
What characteristic distinguishes bacteria from other organisms in terms of cell structure?
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What is primarily used in the naming of bacterial species based on published articles?
What is primarily used in the naming of bacterial species based on published articles?
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Which genus name is derived from the name of a disease?
Which genus name is derived from the name of a disease?
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Which method is commonly used for identifying bacteria and archaea through biochemical tests and morphology?
Which method is commonly used for identifying bacteria and archaea through biochemical tests and morphology?
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What describes a virus in its extracellular state?
What describes a virus in its extracellular state?
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Which hypothesis suggests that viruses may have originated as fragments of larger nucleic acids?
Which hypothesis suggests that viruses may have originated as fragments of larger nucleic acids?
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What is the primary structural feature of a virion?
What is the primary structural feature of a virion?
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How are viruses classified based on their nucleic acid?
How are viruses classified based on their nucleic acid?
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What determines whether a virus is classified as enveloped or naked?
What determines whether a virus is classified as enveloped or naked?
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What characteristic is NOT used for the classification of viruses?
What characteristic is NOT used for the classification of viruses?
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Which aspect of viruses remains uncertain regarding their origins?
Which aspect of viruses remains uncertain regarding their origins?
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Which type of viruses contain a protein coat along with a lipid layer?
Which type of viruses contain a protein coat along with a lipid layer?
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What method did Louis Pasteur invent to prevent spoilage in consumable liquids?
What method did Louis Pasteur invent to prevent spoilage in consumable liquids?
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Which substance did Sir Joseph Lister introduce to sterilize surgical instruments?
Which substance did Sir Joseph Lister introduce to sterilize surgical instruments?
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What is the first postulate of Koch's Postulates regarding microorganisms?
What is the first postulate of Koch's Postulates regarding microorganisms?
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What significant contribution did Robert Koch make to microbiology?
What significant contribution did Robert Koch make to microbiology?
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What did Dmitri Ivanovski's work primarily contribute to?
What did Dmitri Ivanovski's work primarily contribute to?
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What was the purpose of the hand washing and chlorine disinfection implemented by an early practitioner?
What was the purpose of the hand washing and chlorine disinfection implemented by an early practitioner?
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Which of the following conditions must be met according to Koch's Postulates?
Which of the following conditions must be met according to Koch's Postulates?
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What role does phenol play in antiseptic surgery as introduced by Sir Joseph Lister?
What role does phenol play in antiseptic surgery as introduced by Sir Joseph Lister?
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Which of the following topics addresses relationships between hosts and pathogens during infections?
Which of the following topics addresses relationships between hosts and pathogens during infections?
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Which area of study includes the interactions and classifications of viruses?
Which area of study includes the interactions and classifications of viruses?
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Which topic would likely cover the classification and characteristics of Gram-negative Bacilli?
Which topic would likely cover the classification and characteristics of Gram-negative Bacilli?
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What best describes the range of organisms studied in mycology?
What best describes the range of organisms studied in mycology?
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Which of the following principles is essential in laboratory diagnosis in microbiology?
Which of the following principles is essential in laboratory diagnosis in microbiology?
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Which topic encompasses the study of frequent infections by parasitic agents?
Which topic encompasses the study of frequent infections by parasitic agents?
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Which course section does NOT focus on microbiology’s basic principles?
Which course section does NOT focus on microbiology’s basic principles?
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Which statement accurately depicts the scope of microbiology?
Which statement accurately depicts the scope of microbiology?
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What process involves the building of complex molecules from simple ones and requires energy?
What process involves the building of complex molecules from simple ones and requires energy?
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Which nutritional classification describes bacteria that obtain energy by oxidizing organic molecules from their environment?
Which nutritional classification describes bacteria that obtain energy by oxidizing organic molecules from their environment?
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Which of the following is NOT a biochemical mechanism utilized by bacteria to generate energy?
Which of the following is NOT a biochemical mechanism utilized by bacteria to generate energy?
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What type of transport allows bacteria to uptake nutrients like amino acids across their cell membrane?
What type of transport allows bacteria to uptake nutrients like amino acids across their cell membrane?
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Which is the primary biological function of catabolism in bacterial metabolism?
Which is the primary biological function of catabolism in bacterial metabolism?
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Which process produces the least amount of ATP during energy production?
Which process produces the least amount of ATP during energy production?
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What is a characteristic of anaerobic respiration compared to aerobic respiration?
What is a characteristic of anaerobic respiration compared to aerobic respiration?
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During fermentation, what is typically used as a terminal electron acceptor?
During fermentation, what is typically used as a terminal electron acceptor?
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Which statement is true regarding both aerobic and anaerobic respiration?
Which statement is true regarding both aerobic and anaerobic respiration?
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Which of the following best describes why anaerobic respiration produces less ATP than aerobic respiration?
Which of the following best describes why anaerobic respiration produces less ATP than aerobic respiration?
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What shape characterizes bacterial morphology when referred to as 'coccus'?
What shape characterizes bacterial morphology when referred to as 'coccus'?
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Which of the following is NOT an extracellular structure of bacteria?
Which of the following is NOT an extracellular structure of bacteria?
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Which component is the primary structural element of the bacterial cell wall?
Which component is the primary structural element of the bacterial cell wall?
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In terms of locomotion, what is the primary role of flagella in bacteria?
In terms of locomotion, what is the primary role of flagella in bacteria?
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Which bacterial shape is typically characterized by a curved or comma-like structure?
Which bacterial shape is typically characterized by a curved or comma-like structure?
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What is one of the main functional purposes of pili in bacteria?
What is one of the main functional purposes of pili in bacteria?
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Which of the following examples does NOT represent a pathogenic bacteria related to its morphology?
Which of the following examples does NOT represent a pathogenic bacteria related to its morphology?
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What type of metabolism is linked with the structural characteristics of bacteria?
What type of metabolism is linked with the structural characteristics of bacteria?
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Which statement correctly describes fungi?
Which statement correctly describes fungi?
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What distinguishes helminths from protozoa?
What distinguishes helminths from protozoa?
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What role do ectoparasites play in relation to their host?
What role do ectoparasites play in relation to their host?
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Which characteristic is true regarding bacteria?
Which characteristic is true regarding bacteria?
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Which of the following is a common symptom of fungal lung diseases?
Which of the following is a common symptom of fungal lung diseases?
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Why are protozoa particularly concerning in terms of infection?
Why are protozoa particularly concerning in terms of infection?
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Which differentiates fungal infections from other types of infections?
Which differentiates fungal infections from other types of infections?
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What is the main requirement for a virus to replicate?
What is the main requirement for a virus to replicate?
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Which structural component surrounds the nucleic acid in a virus?
Which structural component surrounds the nucleic acid in a virus?
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Which hypothesis suggests that viruses could originate from pieces of nucleic acid that became independent?
Which hypothesis suggests that viruses could originate from pieces of nucleic acid that became independent?
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What distinguishes enveloped viruses from naked viruses?
What distinguishes enveloped viruses from naked viruses?
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Which of the following is a characteristic feature of viruses?
Which of the following is a characteristic feature of viruses?
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Which factor is NOT considered in the classification of viruses?
Which factor is NOT considered in the classification of viruses?
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What type of nucleic acid can be present in virions?
What type of nucleic acid can be present in virions?
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What is the term for the virus particle that is metabolically inert outside of living cells?
What is the term for the virus particle that is metabolically inert outside of living cells?
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Study Notes
Introduction to Microbiology
- This course introduces the study of microorganisms, including their physiology, ecology, and taxonomy.
- It emphasizes the impact of microorganisms on human health and the consequences of microbial infection.
Contact Details
- Dra Veronica Veses: [email protected], Room 324, 3rd Floor, Health Sciences Building
- Dr Chirag Sheth: [email protected], Room 343, 3rd Floor, Health Sciences Building
- Dra Antonella Locascio: [email protected], Room 322, 3rd Floor, Health Sciences Building
- Dr Slaven Erceg: [email protected], Room 344, 3rd Floor, Health Sciences Building
Course Sections
- Microbiology: Basic principles of medical microbiology, general principles of laboratory diagnosis, bacteriology, virology, mycology, parasitology
Lectures
- Introduction to Medical Microbiology
- Microbial growth and control
- Antimicrobial agents
- Host-pathogen relationships in microbial infections
- Diagnostic microbiology
- Coccus (Staphylococci, Streptococci, Enterococci, Neisseria)
- Gram-positive Bacilli (Bacillus, Corynebacterium, Listeria, Clostridium)
- Gram-negative Bacilli (Enterobacteriaceae, Vibrio, Pseudomonas, Campylobacter, Helicobacter)
- Cocobacilli and Mycobacteria (Haemophilus, Bordetella, Brucella, Francisella, Legionella, Mycobacterium, Nocardia)
- Spirochaetes and Mycoplasmas (Treponema, Borrelia, Leptospira, Mycoplasma, Ureaplasma)
- Intracellular bacteria (Rickettsia, Orientia, Ehrlichia, Anaplasma, Coxiella, Chlamydiaceae)
- Viruses and other subcellular agents
- Clinical Virology (DNA and RNA Virus)
- Frequent infections by fungal agents
- Frequent infections by parasitic agents
References
- MEDICAL MICROBIOLOGY 7TH EDITION, Patrick R Murray; Ken S Rosenthal; Michael A Pfaller
- PRACTICAL MEDICAL MICROBIOLOGY FOR CLINICIANS, Frank E. Berkowitz, Robert C. Jerris
What is Microbiology?
- Microbiology studies small (micro) living organisms and diverse topics like their physiology, ecology, and taxonomy.
- The subject focuses on the impact of microorganisms on human health and the consequences of microbial infection.
History of Microbiology
- 1590: Zacharias Janssen built the first simple microscope.
- 1665: Robert Hooke observed cells through a microscope.
- 1677: Anton van Leeuwenhoek, the "Father of Microbiology," first observed microorganisms.
- 1796: Edward Jenner pioneered vaccination.
- 1846: Ignaz Semmelweis implemented hand washing to reduce maternal mortality.
- 1864: Louis Pasteur invented Pasteurization.
- 1867: Sir Joseph Lister applied Pasteur's principles for antiseptic surgery.
- 1876: Robert Koch provided the first proof of germ theory.
- 1892: Dmitri Ivanovski's work laid the foundation for virology.
- 1910: Paul Ehrlich invented chemotherapy.
- 1928: Sir Alexander Fleming discovered penicillin
- 1931-38: Max Knoll and Ernst Ruska developed the prototype of the electron microscope
Role of Microorganisms
- Microbes play various roles in basic science, agriculture, food microbiology, public health, and epidemiology, including shaping evolutionary theory, photosynthesis, decomposition, food production, infectious diseases, and the healthy microbiome.
Bacteria
- Bacteria are single-celled prokaryotes.
- Estimated hundreds of thousands of bacterial species, with only about 5500 described in detail.
Bacteria structure
- Bacterial structure includes intracellular structures such as the chromosome, plasmids, ribosomes and the cell membrane.
- Extracellular structures include flagella, pili, cell wall, and capsule (not always).
Fungi
- Fungi are eukaryotes found in soil, plants, and humans.
- Many are common, but some fungal diseases (like meningitis and bloodstream infections) are less frequent but deadly.
Parasites
- A parasite lives on or in a host, gaining nourishment at the host's expense.
- Three main types causing human disease: protozoa, helminths, and ectoparasites.
Types of Parasites
- Protozoa: microscopic, single-celled organisms.
- Helminths: large, multicellular organisms.
- Ectoparasites: organisms like ticks, fleas, lice, and mites.
Virus
- Viruses are genetic elements replicating inside host cells (bacteria, animals, plants).
- Viruses are characterized by being obligate intracellular parasites.
- Viruses have an extracellular state called a virion and are metabolically inactive in this state.
Origin of Viruses
- The origin of viruses is uncertain, but two hypotheses suggest possibilities like:
- Fugitive nucleic acid pieces breaking off from larger entities, and
- Viruses may have once lived independently and then lost their genes for autonomous existence.
Virion Structure
- DNA or RNA viruses, with either protein/lipidic coat or neither.
- The structure can vary in size, shape, and chemical composition.
- A capsid contains nucleic acid (DNA or RNA). Complete complex of nucleic acid and protein is called nucleocapsid, which may be enveloped in a membrane(enveloped virus) or not(naked virus)
Virus Classification
- Classified based on species infected, presence/absence of lipid envelope, symmetry of nucleocapsid, type of nucleic acid, number of nucleic acid strands and structure and polarity of the viral genome
Taxonomy
- Taxonomy is a system for organizing, classifying, and naming living organisms.
- Modern taxonomy uses a three-domain system (archaea, bacteria, eucarya).
Specific Examples of Species
- Examples include Klebsiella pneumoniae, Francisella tularensis, Streptococcus pyogenes, Trypanosoma cruzi, Escherichia coli, Bacillus anthracis.
How to name Bacteria
- Bergey's Manual of Determinative Bacteriology: uses phenotypic (morphological and biochemical) characteristics.
- Bergey's Manual of Systematic Bacteriology: uses genetic information (rRNA sequencing).
How to name Fungi, Parasites, and Viruses
- Fungi: Mycobank, Index Fungorum
- Parasites: CDC (www.cdc.gov/dpdx)
- Viruses: ICTV (https://talk.ictvonline.org/)
Bacterial Classification, Morphology, Structure, and Metabolism
- Focuses on the further study of bacteria.
- Covers classification, morphology details, and bacterial structural components (cellular and extracellular components).
- Includes discussion of the function and role of the components and differences between gram-positive and gram-negative bacteria
- Covers various structures such as cell wall, pili, flagella, and capsule
- Examines bacterial metabolic characteristics.
- Microbial metabolism is classified according to energy and carbon source, and electron acceptor.
- Three categories of bacterial energy production: aerobic respiration, anaerobic respiration, fermentation
- Important Concepts
- Gram-positive and Gram-negative bacteria differ in cell wall structure.
- Lipopolysaccharide is found in the outer membrane of Gram-negative bacteria.
- Various types of microbial nutrition and metabolic diversity are included
- The information for bacterial classification in phyla, classes, orders, families, genera, and species, plus subtypes.
Microbiome
- The human microbiome comprises microbes in the human body.
- Includes the roles and functions of the core microbiome, and how the host and microbiome interactions are vital for human health
2020 Coronavirus Pandemic
- First observed in 2019, a novel coronavirus emerged from animals.
- Causing an outbreak in Wuhan, China, it progressed into an epidemic, then a pandemic.
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Description
Test your knowledge on various aspects of bacterial metabolism, including anaerobic and aerobic respiration. This quiz covers electron acceptors, fermentation processes, and metabolic pathways specific to bacteria. Challenge yourself to understand the underlying principles of how bacteria generate energy.