Lecture 21: Lymphocyte Development

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Questions and Answers

What is the role of the RAG complex (RAG1, RAG2) in B cell receptor development?

  • Promoting somatic hypermutation to increase antibody affinity.
  • Enhancing the expression of the AIRE gene.
  • Mediating the rearrangement of gene segments. (correct)
  • Facilitating the class switching from IgM to IgG.

What is the general structure of the heavy chain of the B cell receptor (BCR)?

  • V-D-J
  • V-D-J-C (correct)
  • V-J-D-C
  • V-J-C

What is allelic exclusion?

  • The ability of B cells to undergo somatic hypermutation.
  • The mechanism ensuring B cells express only one heavy chain and one light chain allele. (correct)
  • The process by which B cells express multiple BCRs with different antigen specificities.
  • The regulation of B cell development by follicular dendritic cells.

What is the fate of a developing B cell that fails to correctly rearrange either the heavy or light chain genes?

<p>It undergoes apoptosis. (B)</p> Signup and view all the answers

Which event must precede antigen receptor rearrangement during B and T cell development?

<p>Proliferation of progenitors. (B)</p> Signup and view all the answers

Which cytokine primarily stimulates the proliferation of lymphocyte progenitors during early B and T cell development?

<p>IL-7 (D)</p> Signup and view all the answers

Which of the following best describes the role of stromal cells in B cell development?

<p>Secreting IL-7 to support lymphocyte progenitor proliferation. (A)</p> Signup and view all the answers

Which process is responsible for increasing diversity in the variable region of B cell receptors during development?

<p>V(D)J recombination. (C)</p> Signup and view all the answers

What is the correct order of heavy chain gene segment rearrangement in developing B cells?

<p>D-J, then V-D (C)</p> Signup and view all the answers

Which of the following describes the '12/23 rule' in V(D)J recombination?

<p>Specifies that a 12 bp spacer RRS can only join with a 23 bp spacer RRS. (D)</p> Signup and view all the answers

During somatic recombination, what nucleotide addition is randomly added by terminal deoxynucleotidyl transferase (TdT)?

<p>N-nucleotides. (C)</p> Signup and view all the answers

What is the significance of mutations in the AIRE gene?

<p>Autoimmune disease due to impaired negative selection. (C)</p> Signup and view all the answers

What is the initial immunoglobulin expressed by immature B cells?

<p>IgM (D)</p> Signup and view all the answers

What process allows for the co-expression of IgM and IgD on mature B cells?

<p>mRNA alternative splicing. (B)</p> Signup and view all the answers

Which of the following surface markers is associated with B cell lineage determination?

<p>CD19 (D)</p> Signup and view all the answers

What is the role of Follicular Dendritic Cells (FDCs) in B cell development?

<p>They stimulate B cell maturation in the lymphoid organs. (B)</p> Signup and view all the answers

Why is negative selection important in B and T cell development?

<p>To eliminate self-reactive lymphocytes and prevent autoimmunity. (D)</p> Signup and view all the answers

In T cell development, what is the significance of double-positive (DP) cells?

<p>They express both CD4 and CD8. (A)</p> Signup and view all the answers

What is the function of the AIRE protein in the thymus?

<p>It presents self-antigens to T cells to induce negative selection. (B)</p> Signup and view all the answers

Which type of T cell expresses a T cell receptor composed of gamma and delta chains rather than alpha and beta chains?

<p>Mucosal T cells. (B)</p> Signup and view all the answers

What is the primary function of thymic stromal lymphopoietin (TSLP) in T cell development?

<p>To mature dendritic cells in the medulla so that they can present peptides to SP T cells. (A)</p> Signup and view all the answers

Which of the following is a possible outcome of a T cell interacting with a cortical thymic epithelial cell (cTEC)?

<p>Death by neglect. (D)</p> Signup and view all the answers

What is the earliest stage of T cell development in the thymus in which cells lack both CD4 and CD8 expression?

<p>Double negative (DN). (B)</p> Signup and view all the answers

Mutations in the RAG1/2 genes can lead to which immunodeficiency?

<p>Severe Combined Immunodeficiency (SCID). (D)</p> Signup and view all the answers

What phenotype describes cells in Omenn syndrome?

<p>Reduced Treg production, coupled with elevated serum IgE levels. (C)</p> Signup and view all the answers

What is the immediate consequence of successful TCR beta chain expression?

<p>Inhibition of further beta chain rearrangement and promotion of alpha chain rearrangement. (B)</p> Signup and view all the answers

What distinguishes a pro-B cell from a stem cell during B lymphocyte development?

<p>Germline configuration of heavy chain genes in stem cells vs. D-J rearrangement in pro-B cells. (B)</p> Signup and view all the answers

What cell type expresses a pre-B-cell receptor composed of rearranged heavy chains and surrogate light chains?

<p>Large pre-B cell. (C)</p> Signup and view all the answers

Once a developing B cell successfully rearranges the heavy chain, what event triggers V rearrangement?

<p>Successful D-J rearrangement. (B)</p> Signup and view all the answers

What cell type allows immature B cells to get access to lymphoid follicles?

<p>HEVs. (B)</p> Signup and view all the answers

Transcription factors PAX5 and Notch1 are necessary for:

<p>Commitment to B and T lineages respectively. (C)</p> Signup and view all the answers

What processes of lymphocyte maturation occur in the central lymphoid organs?

<p>Proliferation, Expression of antigen receptor genes, and Selection of lymphocytes that are not autoreactive and express useful antigen receptors (C)</p> Signup and view all the answers

Which cell type do T-cell precursors travel from the bone marrow to develop in?

<p>Thymus (C)</p> Signup and view all the answers

Which of the following must occur for the B cell to rearrange V gene segments of the light chain?

<p>Productive VDJ rearrangement of the heavy chain. (C)</p> Signup and view all the answers

Which of the following accurately describes the relationship between the light chain (LC) and heavy chain (HC) gene loci in B cells?

<p>Both LC and HC loci consist of germline gene segments that must be rearranged for BCR expression. (D)</p> Signup and view all the answers

Which stage of T cell development is characterized by the cells expressing both CD4 and CD8?

<p>Double Positive (DP) stage (A)</p> Signup and view all the answers

Severe combined immunodeficiency (SCID) can result from:

<p>Mutations in the RAG genes. (A)</p> Signup and view all the answers

What role does cellular proliferation perform in lymphocyte repertoire diversity?

<p>It expands rare successful rearrangement events to generate a highly diverse repertoire. (D)</p> Signup and view all the answers

During somatic recombination in B cells, which of the following accurately describes the sequence of events?

<p>D-J joining followed by V segment rearrangement (B)</p> Signup and view all the answers

What is the consequence if a developing B cell fails to successfully rearrange the light chain genes after heavy chain rearrangement?

<p>The B cell undergoes apoptosis. (D)</p> Signup and view all the answers

Which of the following is the primary function of the heptamer and nonamer sequences flanking the V, D, and J gene segments?

<p>To serve as binding sites for the RAG complex during V(D)J recombination. (A)</p> Signup and view all the answers

Which of the following mechanisms contributes to the diversity of antigen receptors during lymphocyte development?

<p>Junctional diversity through the addition or subtraction of nucleotides (A)</p> Signup and view all the answers

Which of the following is the defining characteristic of a pro-B cell?

<p>The initiation of heavy chain gene rearrangement (D)</p> Signup and view all the answers

Which of the following cell types mediates negative selection in the thymus by presenting self-antigens to developing T cells?

<p>Medullary thymic epithelial cells (mTECs) (D)</p> Signup and view all the answers

In T cell development, what event is signaled by successful TCR beta chain rearrangement?

<p>Allelic exclusion of the beta chain locus and proliferation (A)</p> Signup and view all the answers

What distinguishes the function of cortical thymic epithelial cells (cTECs) from medullary thymic epithelial cells (mTECs) in T cell development?

<p>cTECs mediate positive selection, while mTECs mediate negative selection. (B)</p> Signup and view all the answers

Which outcome is associated with mutations causing a loss of function of the AIRE gene?

<p>Autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED) (C)</p> Signup and view all the answers

Which cell expresses a pre-B cell receptor composed of rearranged heavy chains and surrogate light chains?

<p>Large pre-B cell (C)</p> Signup and view all the answers

What role do follicular dendritic cells (FDCs) play in B cell development within the germinal centers?

<p>Present antigen to B cells for affinity maturation (B)</p> Signup and view all the answers

Which of the following best describes the mechanism by which co-expression of IgM and IgD is achieved in mature B cells?

<p>Alternative mRNA splicing (A)</p> Signup and view all the answers

Which of the following is the primary role of thymic stromal lymphopoietin (TSLP) in T cell development?

<p>Promoting the survival and maturation of dendritic cells in the thymic medulla (A)</p> Signup and view all the answers

In the context of V(D)J recombination, what is the biochemical function of terminal deoxynucleotidyl transferase (TdT)?

<p>Adding non-templated nucleotides at the junctions between gene segments (B)</p> Signup and view all the answers

How does the process of allelic exclusion contribute to B cell receptor (BCR) specificity?

<p>By allowing each B cell to express only one heavy chain and one light chain allele. (D)</p> Signup and view all the answers

During T cell development, what is the significance of a double-negative (DN) thymocyte?

<p>It lacks expression of both CD4 and CD8 (B)</p> Signup and view all the answers

What is the functional consequence of a mutation that disrupts the 12/23 rule in V(D)J recombination?

<p>Aberrant joining of gene segments, leading to non-functional antigen receptors (A)</p> Signup and view all the answers

Severe combined immunodeficiency (SCID) can result from mutations in the IL-7 receptor. What is the mechanism that connects the loss of IL-7 signaling to SCID?

<p>Defective lymphocyte proliferation and survival due to diminished signals for progenitor expansion. (B)</p> Signup and view all the answers

During somatic recombination, under what circumstances would an RRS with a 12 bp spacer be joined to an RRS with another 12 bp spacer?

<p>Never (C)</p> Signup and view all the answers

How does the lack of thymic expression of tissue-restricted self-antigens (TRASs) influence self-tolerance?

<p>Self-antigen-specific T cells are not negatively selected and mature into autoreactive helper T cells. (B)</p> Signup and view all the answers

Considering the stochastic nature of V(D)J recombination and the combinatorial diversity arising from heavy and light chain pairing, what imposed constraint is primarily responsible for ensuring that each B cell expresses a BCR of a single antigen specificity?

<p>Epigenetic modification leading to allelic exclusion. (B)</p> Signup and view all the answers

Given the expression of both IgM and IgD is regulated by mRNA splicing, what regulatory mechanism precisely determines the ratio of membrane-bound versus secreted forms of IgM and IgD during a B cell's transition from immature to mature?

<p>The competitive binding of splicing factors to alternative splice acceptor sites within the heavy chain transcript. (A)</p> Signup and view all the answers

During T cell development, positive selection in the thymic cortex is essential for ensuring MHC restriction. What specific characteristic of the TCR-MHC interaction determines whether a thymocyte receives a survival signal during positive selection?

<p>The duration and stability of the TCR-MHC-peptide interaction, leading to sustained signaling. (D)</p> Signup and view all the answers

Central tolerance in the thymus depends on medullary thymic epithelial cells (mTECs) expressing a wide array of tissue-restricted antigens (TRAs) under the control of the AIRE protein. How does the presentation of TRAs by mTECs contribute to the prevention of autoimmunity targeting highly differentiated cells?

<p>By promoting the deletion of thymocytes whose TCRs bind with high affinity to TRAs presented on MHC molecules. (C)</p> Signup and view all the answers

Considering the inherent error rate of DNA polymerases during somatic hypermutation in B cells, what safeguard mechanisms are in place to prevent malignant transformation resulting from off-target mutations in proto-oncogenes or tumor suppressor genes?

<p>DNA damage checkpoints and apoptosis pathways activated by excessive off-target mutations. (D)</p> Signup and view all the answers

Given the role of IL-7 in promoting the proliferation of early lymphocyte progenitors, how does signaling via the IL-7 receptor (IL-7R) impact the expression of genes encoding for proteins involved in V(D)J recombination?

<p>It directly activates the transcription of RAG1 and RAG2 genes through STAT5 phosphorylation and nuclear translocation. (C)</p> Signup and view all the answers

Central tolerance induction requires both deletion of strongly autoreactive T cells and the development of regulatory T cells (Tregs). What unique property of the TCR signaling threshold in the thymus determines whether a thymocyte differentiates into a Treg rather than undergoing apoptosis?

<p>A high-avidity interaction with self-antigen that triggers sustained but sub-lethal TCR signaling. (B)</p> Signup and view all the answers

Considering the function of terminal deoxynucleotidyl transferase (TdT) in introducing N-nucleotides during V(D)J recombination, what is the most likely consequence of TdT activity being dysregulated, leading to excessive N-nucleotide addition?

<p>Increased risk of receptor-independent signaling and auto reactivity, resulting from disrupted reading frames and decreased BCR/TCR diversity. (A)</p> Signup and view all the answers

In the context of somatic hypermutation (SHM) within germinal centers, what mechanism prevents AID-mediated cytosine deamination from indiscriminately mutating the entire genome, leading to genomic instability and cellular transformation?

<p>Targeting of AID to immunoglobulin loci through interactions with specific DNA-binding proteins and epigenetic marks. (C)</p> Signup and view all the answers

Considering that RAG1/2 proteins are involved in both combinatorial and junctional diversity during V(D)J recombination, what would be the most plausible mechanism by which mutations in RAG1/2 could lead to Omenn syndrome, characterized by oligoclonal T cells?

<p>Mutations that preserve partial RAG1/2 activity result in biased or incomplete V(D)J recombination, favoring a limited set of TCR specificities. (B)</p> Signup and view all the answers

Given the importance of the 12/23 rule in V(D)J recombination, what would be the most likely consequence of a mutation that alters the spacing within a recombination signal sequence (RSS) from 12 to 23 base pairs, or vice versa?

<p>Increased frequency of out-of-frame V(D)J joining, leading to non-functional antigen receptors. (B)</p> Signup and view all the answers

Within the intricate choreography of T cell development, double-positive (DP) thymocytes undergo positive selection based on their TCR affinity for self-MHC molecules. What critical signaling event is triggered upon successful engagement of the TCR with self-MHC that commits the DP thymocyte to a specific T cell lineage (CD4+ or CD8+)?

<p>Selective upregulation of the transcription factor Runx3 in cells interacting with MHC class I, thus stabilizing CD8 expression (B)</p> Signup and view all the answers

Central tolerance induction relies on the ability of medullary thymic epithelial cells (mTECs) to ectopically express a vast array of tissue-restricted self-antigens (TRAs) under the control of the autoimmune regulator (AIRE) protein. What mechanism ensures that TRAs are processed and presented on both MHC class I and class II molecules to effectively screen developing T cells?

<p>mTECs undergo autophagy to deliver cytoplasmic proteins into the endocytic pathway for MHC class II presentation (B)</p> Signup and view all the answers

Mature B cells achieve co-expression of IgM and IgD through alternative mRNA splicing. How does the cell regulate the ratio of IgM to IgD expression to fine-tune its sensitivity to antigen stimulation?

<p>Competitive binding of splicing factors to alternative splice sites within the Ig heavy chain pre-mRNA. (B)</p> Signup and view all the answers

Given the role of recombination signal sequences (RSSs) in directing V(D)J recombination, how might epigenetic modifications in the vicinity of RSSs control lineage-specific antigen receptor gene rearrangement?

<p>RSS-associated epigenetic marks influence the accessibility of gene segments to RAG1/2 and higher-order chromatin structure. (A)</p> Signup and view all the answers

During T cell development, what would be the most likely outcome if a double-positive (DP) thymocyte expresses a T cell receptor (TCR) that binds with high affinity to both MHC class I and MHC class II molecules on cortical thymic epithelial cells (cTECs)?

<p>The thymocyte undergoes apoptosis due to excessive TCR signaling and constitutive activation (C)</p> Signup and view all the answers

In the context of the development of gamma-delta (γδ) T cells, what mechanism explains their capacity to respond rapidly to stress signals and infections without prior sensitization, in contrast to the antigen-dependent activation of alpha-beta (αβ) T cells?

<p>γδ T cells express a limited repertoire of TCRs biased toward recognition of self-antigens upregulated during cellular stress (A)</p> Signup and view all the answers

Given that terminal deoxynucleotidyl transferase (TdT) is primarily active during heavy chain rearrangement, how does its absence specifically impact the diversity and composition of the B cell repertoire, particularly in early B cell development?

<p>TdT absence primarily affects the structure of the heavy chain CDR3 region, impacting antigen recognition, which results in reduced affinity to antigen (C)</p> Signup and view all the answers

How is the ordered rearrangement of antigen receptor genes ensured during lymphocyte development, considering that RAG1/2 proteins recognize identical recombination signal sequences (RSSs) flanking V, D, and J gene segments?

<p>The 12/23 rule, restricting recombination to gene segments flanked by RSSs with different spacer lengths (A)</p> Signup and view all the answers

The pre-TCR signaling ensures survival and proliferation of thymocytes after successful TCR-beta chain rearrangement. What downstream signaling pathways activated by the pre-TCR are indispensable for mediating allelic exclusion of the TCR-beta locus?

<p>Activation of the PI3K/Akt pathway, promoting cell survival and proliferation (A)</p> Signup and view all the answers

To what extent does differential expression of transcription factors influence the commitment of multipotent progenitors toward either B cell or T cell lineages, considering the shared developmental origins of these lymphocytes?

<p>Lineage-affiliated transcription factors antagonize the expression and function of transcription factors associated with alternative fates (B)</p> Signup and view all the answers

Considering the phenomenon of receptor editing in B cells, what cellular mechanisms guide B cells to re-engage the V(D)J recombination machinery specifically at the light chain locus, particularly following recognition of self-antigen by a newly formed IgM receptor?

<p>Autoreactive receptor ligation triggers a sustained intracellular signaling cascade that alters chromatin structure at the light chain locus (C)</p> Signup and view all the answers

During the development of T cells, lineage commitment to αβ T cells and γδ T cells are thought to be mutually exclusive. How would disruption of intercellular signaling during T cell development specifically influence cell fate?

<p>Notch signalling regulates T cell lineage commitment by specifying transcription of cell-surface signalling receptor Notch and subsequent downstream targets (C)</p> Signup and view all the answers

Considering the structural basis for V(D)J recombination, what mechanisms prevent the joining of two V gene segments directly to each other without an intervening D gene segment in heavy chain loci?

<p>The 12/23 rule and the spatial arrangement of RSSs flanking V, D and J gene segments. (D)</p> Signup and view all the answers

What cellular mechanisms orchestrate the egress of mature, naïve T cells from the thymus into the peripheral circulation, ensuring their proper distribution and function within secondary lymphoid organs?

<p>FoxP3 expression in T cells promotes up regulation of sphingosine-1 phosphate receptor (S1PR), guiding them to exit. from the thymus. (B)</p> Signup and view all the answers

During negative selection, what signal would result in T cell apoptosis and how does this affect the overall populations of future T cells?

<p>Very low expression of antigen binding to cognate MHC molecules results in apoptosis of the developing T cell and decreases the diversity of mature cells that leave the thymus. (B)</p> Signup and view all the answers

Immature thymocytes in the outer cortex of the thymus are subjected to a barrage of signaling and tolerance protocols, how does lack of IL-7 or improper pre-TCR signalling effect progression through the thymus?

<p>Reduced levels of pre-TCR or IL-7 signalling forces T-cell precursors into apoptosis because correct signals were not received between DN and DP stages. (A)</p> Signup and view all the answers

The AIRE protein is important for expression of tissue restricted antigens (TRA). TRA presentation is regulated by two distinct populations of thymic cells. If these cells aren't able to present TRA-MHC complexes, what are the overall immunological consequences?

<p>Reduced binding potential to auto-antigens expressed in the thymus results in escape of T-cells into the periphery promoting systemic autoimmunity. (D)</p> Signup and view all the answers

Severe Combined Immunodeficiency (SCID) is a group of rare disorders caused by mutations in different genes involved in the development and function of immune cells. Mutations in RAG1/2 cause SCID, which is distinct from other types of T- and B- SCID. The RAG proteins perform what essential step in lymphocyte production?

<p>The VDJ recombinase complex makes breaks and religates regions to ensure recognition. (D)</p> Signup and view all the answers

Considering the degeneracy inherent in codon-amino acid relationships, what specific mechanism during junctional diversity is most likely to mitigate the potential for frameshift mutations while maximizing amino acid variability at the V(D)J junctions?

<p>Exonuclease activity preferentially removing nucleotides in multiples of three. (B)</p> Signup and view all the answers

Given that RAG1/2 proteins are responsible for the initial DNA cleavage during V(D)J recombination, how does the cell ensure that cleavage occurs precisely at the border between the coding sequence and the flanking recombination signal sequences (RSSs), thus preventing damage to the coding sequence?

<p>Specific, high-affinity binding of RAG1/2 to the RSS induces a conformational change in the DNA, facilitating accurate separation of the RSS and coding sequence. (A)</p> Signup and view all the answers

In the development of γδ T cells, what unique characteristic of their TCR repertoire and antigen recognition allows them to respond rapidly to stress signals and infections without prior sensitization, contrasting with the antigen-dependent activation of αβ T cells?

<p>γδ TCRs frequently recognize ligands expressed constitutively during cell stress, such as phosphoantigens and alkylamines, which are directly presented without MHC involvement. (B)</p> Signup and view all the answers

Given that IL-7 is crucial for early lymphocyte progenitor survival and proliferation, and that mutations in the IL-7 receptor (IL-7R) can lead to SCID, what is the most likely molecular mechanism by which loss of IL-7 signaling impairs V(D)J recombination?

<p>Reduced expression of RAG1/2 proteins due to downregulation of transcription factors essential for their transcription. (D)</p> Signup and view all the answers

During negative selection, what feature of T-cell to mTEC binding will result in apoptotic-linked clonal deletion?

<p>A T-cell receptor with extreme affinity to cell-surface presented-self peptide-MHC molecules. (A)</p> Signup and view all the answers

Considering the phenomenon of somatic hypermutation (SHM) within germinal centers, what mechanism prevents AID-mediated cytosine deamination from indiscriminately mutating the entire genome, leading to genomic instability and cellular transformation?

<p>Specific targeting of AID to Ig loci via interactions with factors that recognize unique chromatin structures and DNA motifs present only at these locations. (C)</p> Signup and view all the answers

Considering the activity of somatic hypermutation (SHM) in B cells, what cellular mechanisms limit AID-induced damage?

<p>AID specificity. (D)</p> Signup and view all the answers

Mutations in the RAG1/2 genes can lead to Omenn syndrome, which is characterized by oligoclonal T cells. What is the most plausible mechanism by which mutations in RAG1/2 could lead to Omenn syndrome?

<p>Hypomorphic mutations in RAG1/2 that allow some V(D)J recombination but with altered specificity, leading to a limited repertoire of autoreactive T cells that undergo homeostatic expansion. (C)</p> Signup and view all the answers

Flashcards

B Cell Receptor (BCR)

All B cells produce a BCR in the bone marrow, which responds to antigens and includes heavy and light chains.

RAG Complex Role

RAG1 and RAG2 are essential for V(D)J recombination in lymphocytes, which recombine antigen receptor genes.

Allelic exclusion

Ensures that each B cell expresses only one heavy chain and one light chain, resulting in a single antigen specificity per B cell.

Negative Selection

Deletion of self-reactive lymphocytes in the thymus to prevent autoimmunity. Autoimmune regulator regulates thymic expression.

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AIRE Mutation Consequence

Mutations in AIRE cause APECED, a systemic autoimmune disorder that results in abnormalities of teeth, hair, and fingernails.

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T cell CD Markers

CD3, CD4 and CD8

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B cell circulation

Immature B cells leave the bone marrow after selection, then they circulate between blood and lymphoid nodes.

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T Cell Activation

Activation of T cells, mediated by foreign antigens

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B Cell Maturation in LN

Immature B cells pass through LN follicles and become mature B cells after interacting with follicular dendritic cells and cytokines.

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IL-7 in Lymphocyte proliferation

Early lymphocyte development relies on IL-7 for progenitor proliferation, ensuring a diverse antigen-specific lymphocyte repertoire. Mutations in IL-7 can cause SCID.

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Pro-B Cell stage

Early marrow cell committed to a B cell lineage and do not produce immunoglobulin; Heavy chain rearrangement occurs

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Pre-B cell stage

During this process the heavy chain combines with surrogate light chains to make pre-b cell receptor which can be found on the surface of B cell.

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RAG 1 and RAG 2 mutations

Defects in RAG1/2 which can lead to severe immunodeficiency

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T cell development

T cell development occurs in Thymus

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Mature B cell function

Mature B cells are able to respond to antigens

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V(D)J Recombination

V, D, and J gene segments recombine, directed by recombination recognition signals (RRS)

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Junctional diversity

Creates diversity by adding random nucleotides to coding joints

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T cell proliferation

Ensures a wide array of antigen specificities, especially in T cells.

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T cell selection

Immature T cells are screened in the thymus.

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Central tolerance in T cells

Mediated by AIRE; Auto-reactive are eliminated

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Transcription Factors in Lymphocytes

Transcription factors Pax5 and Notch1 commit lymphoid progenitors

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Chain Rearrangement

RAG complex binds to one RRS and then recruits a second RRS.

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T cell loci for alpha

One encodes the alpha chain or the gamma chain

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Study Notes

  • Lymphocyte maturation requires a series of events in central lymphoid organs.
  • T cells develop in the thymus, while B cells mature in the bone marrow
  • This development involves proliferation, antigen receptor gene expression, and selection to avoid autoreactivity.

Commitment to B and T Cell Lineages

  • Early B and T cell development is marked by progenitor proliferation that is stimulated by IL-7, especially for T cell progenitors
  • IL-7 leads to a marked rise in cell numbers
  • It ensures a large enough progenitor pool for a diverse repertoire of antigen-specific lymphocytes
  • IL-7 is produced by stromal cells in both the bone marrow and thymus
  • Mutations in the IL-7 receptor can result in SCID (x-linked)
  • Proliferation occurs before antigen receptor rearrangement
  • Pax5 is a transcription factor required for commitment in B cells
  • Notch1 is a transcription factor required for commitment in T cells

B Cell Receptor (BCR)

  • All B cells generate BCR in the bone marrow to respond to Ag
  • The Ag consists of a Heavy (HC) and Light chain (LC)
  • The HC & LC contain Ag-binding regions of of V, D, J and V, J gene segments, respectively
  • Three gene loci encode immunoglobulins.
  • One locus encodes the heavy chain, which includes V, D, and J segments.
  • Another locus encodes the kappa light chain, including V and J segments.
  • The last locus encodes the lambda light chain, including V and J segments.
  • Heavy (H) and Light (L) chain gene loci contain families of gene segments in germline form.
  • Full-length H and L chains have variable and constant regions, with variable regions containing rearranged gene segments.
  • Expressing a BCR requires rearranging gene segments to assemble a functioning gene, a process unique to developing B cells.
  • The H chain locus = Variable (V) + Diversity (D) + Joining (J) gene segments
  • L chain locus = V + J gene segments
  • Arrays of V, D, and J segments are cut and re-spliced via DNA recombination during B cell development = somatic recombination

Variable Regions

  • L chain variable region consists of V-J segments and a Constant (C) region.
  • H chain variable region consists of V-D-J segments + C region, dictating the BCR and antibody's type or class.
  • H chain variable region genes rearrange first
  • Recombination Recognition Sequences (RRS) direct V, D, and J gene segment recombination
  • RAG complex cleaves RRS, recombining gene segments and ligating new segments.
  • Most of the RAG complex are enzymes for DNA repair/modification while RAG1 and RAG2 recombination-activating genes limited to lymphocytes for Ag receptor expression.

Chain Rearrangement by RAG Complex

  • The RAG complex initially binds to one RRS and then recruits a second RRS
  • DNA is cleaved at the heptamer
  • Two gene segments are ligated, forming a coding joint
  • The 12/23 rule ensures the correct joining of gene segments, pairing a RRS with a 12 bp spacer with an RRS that has a 23 bp spacer

Pro B Cell development

  • Pro B cells are the earliest bone marrow cells committed to the B cell lineage.
  • They do not produce immunoglobulin (Ig)
  • Immunoglobulin heavy chain rearrangement occurs at this stage,
  • Successful D-J recombination triggers V rearrangement.

Pre-B cells

  • Pre-B cells express a pre-BCR comprised of a rearranged HC and surrogate light chain (VpreB and λ5)

Allelic Exclusion

  • Developing B cells only express one H chain and one L chain = allelic exclusion.
  • This ensures each B cell produces a BCR of a single Ag specificity.
  • Upon successful rearrangement on one H chain locus: other chromosome locus undergoes epigenetic silencing, RAG complex degrades and RAG1 and RAG2 transcription stops
  • Large Pre-B cells divide into Small Pre-B cells, then Pre-B receptor stops being produced so RAG genes are re-activated to expressed new RAG complexes to perform L chain rearrangement

Light (L) Chain Activation

  • If κ L chain genes fail to rearrange, λ L chain genes will attempt to rearrange

Junctional Diversity

  • Diversity in the V region increases via random nucleotide addition at coding joints during rearrangement
  • The RAG complex cleaves heptamer RSSs from D and J gene segments, yielding DNA hairpins.
  • The RAG complex opens hairpins via nicking one DNA strand, creating palindromic P-nucleotides
  • Terminal deoxynucleotidyl transferase randomly adds N nucleotides (not encoded by germline DNA).
  • Unpaired nucleotides are then removed by an exonuclease
  • Gaps are filled by DNA synthesis and ligation to form a coding joint
  • This increases diversity by a factor of 3 x 10^7

Summary of BCR Rearrangement

  • The plasma cell selects one each from the variable genes (V), diversity genes (D), joiner genes (J), and constant region genes (C) to form the active gene for the heavy chain.
  • The plasma cell selects one each of the variable genes and joiner genes, connecting those genes to constant region genes to form the active light chain gene.
  • The DNA of the heavy and light chain genes are transcribed to make heavy and light chain polypeptides that are assembled to produce Ig
  • Failure to produce either the H or L chains results in apoptosis - it undergoes apoptosis if a developing B cell fails to successfully rearrange its heavy chain

B cell development

  • B cells develop through several phases: repertoire assembly in the bone marrow, negative selection against self, positive selection to become mature B cells in secondary lymphoid tissues, searching for infection , and finally, attacking infection
  • B cells express IgM + IgD (BCR) upon FDC/cytokine-stimulated maturation in the lymphoid organs
  • Immature IgM+ B cells leave the bone marrow and enter the bloodstream to circulate as well access lymphoid through HEVs
  • Immature B cells pass through LN follicles to become mature B cells (IgM+ IgD+)
  • Mature B cells can then respond to Ags
  • Coexpression of IgD and IgM is possible by mRNA alternate splicing

CD Markers

  • CD10 (CALLA) marks those in early B cell differentiation
  • CD19 is involved in B cell activation can be found in most B cells
  • CD20 and CD81 B cell activation and signaling, are found on B cells

T Cell Receptor (TCR)

  • All T cells generate TCR in the thymus to respond to Ag
  • Ag is composed of both alpha and beta chains (gamma and delta in mucosal T cells) and are subject to positive and negative selection processes)
  • There are two loci that encode the major (α/β) TCR (which is a heterodimer)
  • One encodes the α chain or the γ chain
  • One encodes the ß chain or the δ chain

T cells

  • Develop TCRs in the thymus through 4 phases: T cells are generated in the bone marrow, elimination of those that react with self, activation of those to foreign antigen in secondary lymphoid tissues, differentiation into helper and cytotoxic/memory T cells in secondary lymphoid tissues.
  • They go through a variety of stages: double negative (DN) cell has no CD4 or CD8, double positive cell (DP) is both CD4+CD8+, finally positive/negative selection stages for a cell to become single positive CD4+ or CD8+

T Cell Development

  • TCR begins in the Thymus with DN, through various checkpoints
  • It is dependent on pre-TCR signaling
  • Includes Mature TCR and Immature Signaling
  • Then stops additional TCR β-chain locus rearrangements (allelic exclusion)
  • Also includes expression of CD4 and CD8 coreceptors

TCR beta chain genes

  • Undergo rearrangement first.
  • Successful expression of the TCR beta chain gene promotes alpha chain rearrangement
  • Gamma-delta (γδ) T cells recognize T cells that express a TCR composed of γδ chains

T cell destiny and elimination

  • Determined by engagement with CTEC (Positive Selection) and/or MTEC/DC cells (Negative Selection)
  • SP T cells encounter MTEC and DC in the medulla, then self reactive T cells are eliminated in the thymic medulla - (Negative Selection).
  • Ags are only derived from the thymus (i.e. all self-Ag) because of the unique dual basal lamina
  • SP T cells that bind strongly to self-Ag = Apoptosis.
  • SP T cells TCR that bind moderately to self-Ag = Survival.
  • No proliferation of surviving SP T cells (termed naïve and mature that are surviving CD4+ and CD8+ T cells)

Autoimmune regulator

  • Involved in T-cell development
  • Stimulates thymic expression of many self-antigens.
  • Caused by mutated form of AIRE
  • Systemic disease resulting from defective deletion
  • Systemic disease resulting from defective deletion or inactivation of autoreactive T cells in the thymus
  • Has abnormalities of teeth, hair, and fingernails

RAG-1 and RAG-2 deficiencies

  • Includes Severe combined immunodeficiency disease (SCID) and Omenn syndrome
  • Mutations and defects in RAG1/2 and AIRE can lead to severe immunodeficiencies
  • Surviving T cells leave and express CCR7 and migrate to secondary lymphoid organs
  • Surviveing T cells can respond to Ags
  • AIRE-deficient mice exhibit increased survival of self-reactive T cells due to impaired negative selection, the most likely outcome of this defect is the escape of autoreactive T cells into the periphery, leading to autoimmunity

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