Apoptosis and Cell Cycle Quiz

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Questions and Answers

What is the main function of apoptosis in cellular biology?

  • To create energy for cell function
  • To promote cell regeneration
  • To initiate inflammation
  • To eliminate unwanted cells (correct)

Which pathway of apoptosis is initiated by the activation of cell surface death receptors?

  • Regulatory pathway
  • Intrinsic pathway
  • Extrinsic pathway (correct)
  • Caspase pathway

What role do initiator caspases play in the apoptosis process?

  • They inhibit apoptosis
  • They directly cleave DNA
  • They stabilize mitochondria
  • They activate execution caspases (correct)

What critical proteins are released from mitochondria during the intrinsic pathway of apoptosis?

<p>Cytochrome c (B)</p> Signup and view all the answers

Which of the following statements about caspases is correct?

<p>Caspases have a cysteine in their active site (B)</p> Signup and view all the answers

What is a consequence of inappropriate levels of apoptosis?

<p>Contributing to disease (A)</p> Signup and view all the answers

During DNA fragmentation in apoptosis, which enzyme is involved in cleaving the DNA?

<p>CAD (D)</p> Signup and view all the answers

What is the effect of extracellular survival factors on apoptosis?

<p>They prevent apoptosis (C)</p> Signup and view all the answers

What role does positive feedback play in the activation of m-cdk?

<p>It leads to the activation of cdc25. (B)</p> Signup and view all the answers

What is the key regulatory event in the late M phase?

<p>The inactivation of cdks. (D)</p> Signup and view all the answers

How does the Anaphase-promoting complex/cyclosome (Apc/c) function?

<p>It assembles polyubiquitin chains on target proteins. (D)</p> Signup and view all the answers

What happens to cdc25 and Wee1 when m-cdk is activated?

<p>Cdc25 is activated and Wee1 is inhibited. (D)</p> Signup and view all the answers

What triggers DNA replication in the cell cycle?

<p>S-cdk initiation. (A)</p> Signup and view all the answers

What effect does the stable G1 phase have on the cell?

<p>The cell grows and monitors its environment. (A)</p> Signup and view all the answers

What triggers the separation of sister chromatids during mitosis?

<p>Ubiquitylation of securin (D)</p> Signup and view all the answers

What is the role of the spindle assembly checkpoint in mitosis?

<p>To block the transition from metaphase to anaphase (B)</p> Signup and view all the answers

Which structure holds sister chromatids together during cell division?

<p>Cohesins. (D)</p> Signup and view all the answers

Which molecule is cleaved to allow sister chromatids to separate?

<p>Scc1 (C)</p> Signup and view all the answers

How is m-cdk inactivated as cells prepare to enter a new cell cycle?

<p>Through degradation of m-cyclin. (C)</p> Signup and view all the answers

What component of the mitotic spindle helps determine the plane of cell division?

<p>Microtubules (B)</p> Signup and view all the answers

How does rhoA influence the process of cytokinesis?

<p>By triggering assembly and contraction of the contractile ring (B)</p> Signup and view all the answers

What happens immediately after the last sister chromatid pair becomes bi-oriented on the spindle?

<p>Destruction of securin begins (C)</p> Signup and view all the answers

During which phase of mitosis do chromosomes segregate into daughter cells?

<p>Anaphase (D)</p> Signup and view all the answers

Which of the following statements about cytokinesis is true?

<p>Mitosis can occur without cytokinesis. (A)</p> Signup and view all the answers

What event triggers the start of the cell cycle?

<p>The initiation of DNA replication (D)</p> Signup and view all the answers

Which phase do cells have double the DNA content due to DNA replication?

<p>G2 phase (C)</p> Signup and view all the answers

What occurs during the G2/M transition in the cell cycle?

<p>Cells trigger mitosis (A)</p> Signup and view all the answers

Which protein complex initiates the transition from metaphase to anaphase?

<p>APC/C (B)</p> Signup and view all the answers

What function do cyclins serve in the cell cycle control system?

<p>Activate the necessary kinases (B)</p> Signup and view all the answers

What is the role of the Cdk inhibitor protein (cki)?

<p>Distort the active site of Cdk (A)</p> Signup and view all the answers

How is the cyclin-Cdk complex activated?

<p>By the removal of inhibitory phosphates (D)</p> Signup and view all the answers

What happens to the Cdk proteins during the cell cycle?

<p>Their levels remain constant (B)</p> Signup and view all the answers

What triggers the conformational change in Apaf1 leading to apoptosome formation?

<p>Binding of cictrhrome C (C)</p> Signup and view all the answers

What is the role of Bak in the process of apoptosis?

<p>It oligomerizes in the outer membrane to induce MOMP. (D)</p> Signup and view all the answers

How do BH3-only proteins like Bad contribute to apoptosis?

<p>By inhibiting anti-apoptotic Bcl2 proteins. (D)</p> Signup and view all the answers

What is MOMP and its significance in apoptosis?

<p>Mitochondrial outer membrane permeabilization allowing protein release into the cytosol. (A)</p> Signup and view all the answers

What role do anti-apoptotic Bcl2 family proteins play?

<p>They inhibit pro-apoptotic proteins to prevent apoptosis. (D)</p> Signup and view all the answers

Which statement correctly describes IAP proteins?

<p>They prevent the activation of caspases during apoptosis. (B)</p> Signup and view all the answers

What is the primary function of cytochrome C in apoptosis?

<p>To activate the apoptosome complex. (B)</p> Signup and view all the answers

What is the expected outcome when pro-apoptotic factors are activated?

<p>Induction of apoptosis via caspase activation. (C)</p> Signup and view all the answers

What role does the protein m o m p play in relation to apoptosis?

<p>Releases anti-IAP proteins to mitigate caspase activity. (D)</p> Signup and view all the answers

Which protein is responsible for phosphorylating and inactivating bad in the apoptotic pathway?

<p>Akt (A)</p> Signup and view all the answers

Why do some nerve cells undergo apoptosis during development?

<p>Because they receive insufficient survival factors. (B)</p> Signup and view all the answers

What is the significance of phosphatidylserine in the context of apoptosis?

<p>It serves as an 'eat me' signal for phagocytic cells. (D)</p> Signup and view all the answers

How do extracellular survival factors generally inhibit apoptosis?

<p>By stimulating the transcription of anti-apoptotic proteins. (A)</p> Signup and view all the answers

What happens to flippase during the apoptotic process?

<p>It is inactivated, allowing phosphatidylserine to move outward. (B)</p> Signup and view all the answers

What can happen if apoptosis is either excessive or insufficient?

<p>It can contribute to various diseases. (A)</p> Signup and view all the answers

What is the function of scramblase in the apoptosis process?

<p>To randomly transfer lipids between membrane leaflets. (B)</p> Signup and view all the answers

Flashcards

Cell cycle control system

The cell cycle control system is a network of proteins that regulates the progression of the cell cycle, ensuring that events occur in the correct order and that the cell only divides when necessary.

G1/S checkpoint

The G1/S checkpoint, also known as the restriction point, is a critical control point that determines whether a cell commits to DNA replication and enters the S phase.

G2/M checkpoint

The G2/M checkpoint ensures that the cell has successfully replicated its DNA and is ready for mitosis.

Metaphase to anaphase transition checkpoint

The metaphase to anaphase transition checkpoint ensures that all chromosomes are properly aligned on the mitotic spindle before sister chromatids separate and the cell divides.

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Cyclin-dependent kinases (CDKs)

Cyclin-dependent kinases (CDKs) are a family of protein kinases that are activated by cyclin proteins. CDKs play a crucial role in the regulation of the cell cycle.

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Cyclins

Cyclins are a family of proteins that bind to and activate CDKs, leading to the phosphorylation of specific target proteins.

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APC/C

The anaphase-promoting complex/cyclosome (APC/C) is a ubiquitin ligase that targets specific proteins for degradation. It plays a critical role in the metaphase to anaphase transition.

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Protein phosphatases

Protein phosphatases are enzymes that remove phosphate groups from proteins, counteracting the effects of kinases and regulating the cell cycle.

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Cyclin-CDK Complex

A complex of a cyclin protein and a cyclin-dependent kinase (CDK), essential for the control of cell cycle progression. Different cyclin-CDK complexes are activated at specific stages of the cell cycle.

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Anaphase-Promoting Complex/Cyclosome (Apc/c)

A key regulatory protein in the cell cycle, activated in late M phase. Its activation leads to the inactivation of other cyclin-CDK complexes, preparing the cell for a new cycle.

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Spindle Assembly Checkpoint

A checkpoint that ensures the alignment of chromosomes at the metaphase plate before moving to anaphase. It monitors spindle assembly and the integrity of the mitotic apparatus.

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Cohesins

A family of proteins that function as molecular glue, holding sister chromatids together during DNA replication.

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Wee1 Kinase

A protein kinase that plays a crucial role in the activation of the M-CDK complex. Its inactivation is necessary for the transition from G2 phase to M phase.

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S-CDK

A cyclin-dependent kinase (CDK) that plays a key role in the initiation of DNA replication during the S phase. It helps activate the necessary proteins and enzymes for DNA replication.

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PP2A-B55

A protein phosphatase that removes inhibitory phosphates from Wee1 and Cdc25. It plays a role in the activation of the M-CDK complex.

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G1 Gap Phase

An inactive state of CDK activity, typically observed during the G1 phase. It represents a resting state where the cell is monitoring its environment before committing to a new cell cycle.

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Kinetochore Microtubule Dynamics

The length of kinetochore microtubules remains relatively constant during this process because new tubulin subunits are added at the plus end at the same rate as they are removed from the minus end. This dynamic equilibrium allows the microtubule to act as a pulling force, drawing the chromosome towards the spindle pole.

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APC/C Role in Mitosis

A protein complex known as the Anaphase-Promoting Complex or Cyclosome (APC/C) is responsible for initiating sister chromatid separation, marking the transition from metaphase to anaphase. It triggers a cascade of events that ultimately lead to the completion of mitosis.

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Securin and Separase: Partners in Chromatid Separation

The destruction of securin by APC/C activates separase, an enzyme that cleaves cohesin, the protein complex holding sister chromatids together. This allows the forces of the mitotic spindle to pull the sister chromatids apart.

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Cytokinesis and the Contractile Ring

As chromosomes are segregated, the contractile ring, composed of actin and myosin II, constricts, dividing the cytoplasm and eventually pinching off the two daughter cells. This is the critical step that completes cell division.

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Microtubules and Cytokinesis Plane

The plane of cell division in animal cells is determined by the orientation of the microtubules in the mitotic spindle. This ensures that organelles and other cellular components are distributed evenly between the two daughter cells.

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Phragmoplast Role in Plant Cell Division

In higher plants, the phragmoplast, a structure formed by microtubules, guides the formation of the cell wall, which ultimately divides the cell into two daughter cells.

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Asymmetric Cell Division

In certain cell types, the spindle can be repositioned, leading to an unequal distribution of cellular components between the two daughter cells. This process is known as asymmetric division and is essential for development and tissue specialization.

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Bcl-2 family proteins

A protein family that regulates apoptosis. Pro-apoptotic members promote cell death, while anti-apoptotic members inhibit cell death.

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Cytochrome c

A mitochondrial protein that, when released into the cytosol, triggers the activation of caspases and apoptosis.

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MOMP (Mitochondrial Outer Membrane Permeabilization)

The process by which the outer mitochondrial membrane becomes permeable, allowing the release of cytochrome c and other apoptotic factors.

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Bak

A pro-apoptotic Bcl-2 family protein that forms oligomers in the outer mitochondrial membrane, leading to MOMP.

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Bcl-xL

An anti-apoptotic Bcl-2 family protein that binds to Bak and inhibits its oligomerization, preventing MOMP.

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BH3-only proteins

Pro-apoptotic proteins that can indirectly trigger MOMP by inhibiting anti-apoptotic Bcl-2 family proteins.

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Apoptosome

A protein complex formed by Apaf1, caspase-9, and cytochrome c, which initiates the caspase cascade during apoptosis.

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Caspases

A family of cysteine proteases that play a central role in apoptosis by cleaving and activating other proteins.

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What is apoptosis?

Apoptosis is a programmed cell death process that eliminates unwanted or damaged cells in a controlled and organized manner.

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What are caspases?

Caspases are a family of proteases (enzymes that break down proteins) that play a central role in apoptosis. These enzymes are cysteine proteases, meaning they have a cysteine residue in their active site. Caspases cleave their target proteins after an aspartate residue.

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What are initiator caspases?

Initiator caspases are activated first in the apoptotic pathway. They then activate executioner caspases, which then cleave a variety of cellular proteins, leading to the cell's death.

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What are executioner caspases?

Executioner caspases are activated by initiator caspases and are responsible for the breakdown of cellular components during apoptosis. They are responsible for the controlled dismantling of the cell.

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What is the extrinsic pathway of apoptosis?

The extrinsic pathway of apoptosis is triggered from outside the cell. It is initiated by the activation of cell surface death receptors, such as Fas, by their respective ligands.

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What is the intrinsic pathway of apoptosis?

The intrinsic pathway of apoptosis originates inside the cell. It is triggered by internal stress signals, often related to cellular damage or dysfunction. These signals can lead to the release of proteins from the mitochondria, such as cytochrome c, which initiates the apoptotic cascade.

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What are Bcl-2 proteins?

Bcl-2 proteins are a family of proteins that regulate the intrinsic pathway of apoptosis. They act as gatekeepers of mitochondrial membrane permeability, controlling the release of apoptosis-inducing molecules. Some Bcl-2 proteins promote apoptosis (e.g., Bax, Bak), while others inhibit it (e.g., Bcl-2, Bcl-XL).

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What are IAP proteins?

IAP (Inhibitor of Apoptosis Proteins) are a family of proteins that can inhibit the activity of caspase proteins. They act as negative regulators of apoptosis, preventing unwanted cell death. However, they can be inactivated or disrupted by other proteins like Smac.

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What are IAPs?

IAPs (Inhibitors of Apoptosis Proteins) are a family of proteins that prevent apoptosis by inhibiting caspase activity. They act as a brake to ensure cells only die when it's needed.

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How do survival factors work?

Survival factors counteract the apoptotic signals by activating pathways that promote cell survival. They inhibit the pro-apoptotic proteins and can activate anti-apoptotic proteins to keep the cell alive.

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How do survival factors block apoptosis (Method 1)?

One way survival factors inhibit apoptosis is by promoting the transcription of genes that encode anti-apoptotic proteins, like Bcl-2. These proteins inhibit the activation of caspases, preventing cell death.

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How do survival factors block apoptosis (Method 2)?

Survival factors also activate the Akt kinase, which phosphorylates and inactivates Bad, a pro-apoptotic protein. This frees up Bcl-2 to prevent apoptosis.

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How do cells signal their impending death?

During apoptosis, cells display 'eat me' signals on their surface, like phosphatidylserine. These signals indicate to neighboring phagocytes that the cell is meant to be engulfed and removed.

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How does phosphatidylserine act as an 'eat me' signal?

Phosphatidylserine is a phospholipid usually found on the inner leaflet of the plasma membrane. When apoptosis occurs, flippase is deactivated, and scramblase is activated, causing it to flip to the outer leaflet where it acts as a signal for phagocytosis.

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Study Notes

Cell Cycle

  • Eukaryotic cells divide to produce genetically identical daughter cells
  • Cell cycle has several phases involved in chromosomal duplication and segregation
  • Major chromosomal events of the cell cycle occur in S phase (duplication) and M phase (segregation).
  • Interphase includes G1, S, and G2 phases
  • G1 phase: cell growth and normal metabolic roles
  • S phase: replication of DNA
  • G2 phase: cell growth and preparation for mitosis

Eukaryotic Cell Division

  • M phase typically occupies a small fraction of the cell cycle
  • Interphase includes S phase and gap phases
  • Stages of mitosis:
    • Prophase: chromosomes condense
    • Prometaphase: spindle microtubules attach to chromosomes
    • Metaphase: chromosomes align at cell equator
    • Anaphase: sister chromatids separate
    • Telophase: chromosomes arrive at opposite ends

Cytokinesis

  • Division of the cytoplasm, forming 2 cells
  • Two major regulatory steps in mitosis involve:
    • M-cdk and other protein kinase drive entry into mitosis
    • Apc/c triggers the destruction of securin, initiating sister chromatid separation

Cell Cycle Control

  • Cell cycle control at three major regulatory transitions:
    • Start, when the cell commits to cell cycle entry and DNA replication
    • G2/M transition, when the cell triggers mitosis
    • Metaphase to anaphase transition, which triggers sister chromatid separation
  • Hundreds of cdk substrates are phosphorylated in a defined order
  • Not well understood how the correct order of phosphorylation is achieved
  • Positive feedback generates the switch-like behavior of cell-cycle transitions

Cell Cycle Control System

  • Depends on cyclically activated cyclin-dependent protein kinases (cdks)
  • Cyclins undergo a cycle of synthesis and degradation in each cell cycle
  • Cyclical changes in cyclin protein levels result in cyclic assembly and activation of cyclin–cdk complexes
  • Concentrations of three major cyclin types oscillate during the cell cycle
  • A separate regulatory protein complex, the APC/C, initiates the metaphase to anaphase transition
  • Phosphorylation of Cdk2 (by CAK) activates the enzyme
  • Cdk activity is regulated by inhibitory phosphorylation (Wee1) and activation (Cdc25 phosphatase)

Regulation of Cdk Activity

  • The active cyclin-cdks are off when kinase Wee1 phosphorylates two sites above the active site.
  • Removal of these phosphates by phosphatase Cdc25 activates the complex
  • CAK adds the activating phosphate
  • cdk inhibitors (CKIs) can inhibit Cdk activity
  • Protein phosphatases reverse the effects of cdks

Mitosis

  • Major steps summarized:
    • Prophase: chromosomes condense
    • Prometaphase: spindle microtubules attach to chromosomes
    • Metaphase: chromosomes align at cell equator
    • Anaphase: sister chromatids separate
    • Telophase: chromosomes arrive at opposite ends
    • Cytokinesis: division of the cytoplasm

Cell Cycle and DNA Replication

  • S phase: DNA replication occurs only once per cell cycle
  • Chromosome duplication requires duplication of chromatin structure
  • Cohesins hold sister chromatids together.

Meiosis

  • Special type of nuclear division that differs from mitosis
  • In animals, meiosis occurs in the gonads
  • Results in four genetically unique daughter cells (gametes) each with just one set of chromosomes
  • Duplicated homologs pair during meiotic prophase
  • Crossing over holds bivalents together, and contributes to genetic variation

Mitosis-Telophase

  • Chromosomes are packaged in daughter nuclei
  • Actin and myosin II in the contractile ring guide the process of cytokinesis

Cytokinesis

  • Microtubules of the mitotic spindle determine the plane of animal cell division
  • This ensures that the cleavage plane is between the two daughter nuclei

Control of Cell Division and Growth

  • Mitogens stimulate cell division, primarily by triggering a wave of G1/S-cdk activity
  • Growth factors stimulate cell growth by promoting protein synthesis
  • Survival factors promote cell survival by suppressing apoptosis
  • Many human cells have a limitations on the number of times they can divide

DNA Damage

  • DNA damage leads to accumulation of active p53 protein, arresting the cell in G1 until DNA repair is required

Apoptosis

  • Apoptosis eliminates unwanted cells
  • Depends on an intracellular proteolytic cascade mediated by caspases
  • Extrinsic pathway: activation of cell surface death receptors
  • Intrinsic pathway: depends on proteins released from mitochondria
  • Inhibitors of apoptosis (IAPs) help control caspase activation
  • Caspases are proteases that cleave targets after aspartate residue.
  • Initiator caspases activate execution caspases which lead to controlled apoptotic death.

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