Podcast
Questions and Answers
What is the significance of the sigmoidal curve in actin polymerization?
What is the significance of the sigmoidal curve in actin polymerization?
Why does the addition of nucleated actin accelerate actin polymerization?
Why does the addition of nucleated actin accelerate actin polymerization?
What is the primary reason why actin dimers and trimers are considered unstable?
What is the primary reason why actin dimers and trimers are considered unstable?
How does the use of Pyrene-conjugated actin contribute to the understanding of actin polymerization?
How does the use of Pyrene-conjugated actin contribute to the understanding of actin polymerization?
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What is the role of salt in actin polymerization?
What is the role of salt in actin polymerization?
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Based on the information provided, what can be inferred about the role of ATP in actin polymerization?
Based on the information provided, what can be inferred about the role of ATP in actin polymerization?
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Which of the following statements accurately describes the relationship between actin, myosin, and ATP in muscle contraction?
Which of the following statements accurately describes the relationship between actin, myosin, and ATP in muscle contraction?
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Based on the information provided, how does the role of actin in muscle contraction align with its role in cell motility?
Based on the information provided, how does the role of actin in muscle contraction align with its role in cell motility?
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What does the presence of an ATP/GTP cap at the plus end of an actin or microtubule filament indicate?
What does the presence of an ATP/GTP cap at the plus end of an actin or microtubule filament indicate?
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What happens when a subunit in an actin or microtubule filament hydrolyzes ATP or GTP?
What happens when a subunit in an actin or microtubule filament hydrolyzes ATP or GTP?
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In vitro, what is the primary factor influencing the rate of actin filament polymerization?
In vitro, what is the primary factor influencing the rate of actin filament polymerization?
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Which of the following best describes the relationship between ATP/GTP hydrolysis and the stability of actin or microtubule filaments?
Which of the following best describes the relationship between ATP/GTP hydrolysis and the stability of actin or microtubule filaments?
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Why is the minus end of an actin or microtubule filament considered the slower growing end?
Why is the minus end of an actin or microtubule filament considered the slower growing end?
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What is the primary role of ATPase or GTPase activity in the context of actin and microtubule dynamics?
What is the primary role of ATPase or GTPase activity in the context of actin and microtubule dynamics?
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What is the significance of the discovery of actin by Albert Szent-Györgyi's lab?
What is the significance of the discovery of actin by Albert Szent-Györgyi's lab?
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How do actin and microtubule filaments differ in their dynamic behaviors?
How do actin and microtubule filaments differ in their dynamic behaviors?
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At steady-state, what is the relationship between the free subunit concentration and the rate of polymer elongation?
At steady-state, what is the relationship between the free subunit concentration and the rate of polymer elongation?
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What does the critical concentration (Cc) represent in terms of polymer dynamics?
What does the critical concentration (Cc) represent in terms of polymer dynamics?
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If the free subunit concentration is greater than the critical concentration (Cc), what happens to the polymer?
If the free subunit concentration is greater than the critical concentration (Cc), what happens to the polymer?
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What is the mathematical expression for the elongation rate in terms of the free subunit concentration (subunit), the rate constant for association (kon), and the rate constant for dissociation (koff)?
What is the mathematical expression for the elongation rate in terms of the free subunit concentration (subunit), the rate constant for association (kon), and the rate constant for dissociation (koff)?
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How does the polarity of actin affect its dynamics?
How does the polarity of actin affect its dynamics?
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What does the term "steady-state" refer to, in the context of cytoskeletal dynamics?
What does the term "steady-state" refer to, in the context of cytoskeletal dynamics?
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What is the mathematical expression for the critical concentration ("Cc") in terms of the rate constants for association (kon) and dissociation (koff)?
What is the mathematical expression for the critical concentration ("Cc") in terms of the rate constants for association (kon) and dissociation (koff)?
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What is the relationship between the free subunit concentration (subunit) and the rate of polymer elongation (dn/dt) when the subunit concentration is less than the critical concentration (Cc)?
What is the relationship between the free subunit concentration (subunit) and the rate of polymer elongation (dn/dt) when the subunit concentration is less than the critical concentration (Cc)?
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If the free subunit concentration is equal to the critical concentration (Cc), what is the rate of polymer elongation (dn/dt)?
If the free subunit concentration is equal to the critical concentration (Cc), what is the rate of polymer elongation (dn/dt)?
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What does the term "free subunit" refer to in the context of cytoskeletal dynamics?
What does the term "free subunit" refer to in the context of cytoskeletal dynamics?
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What is the critical concentration (Cc) in the context of actin filament dynamics?
What is the critical concentration (Cc) in the context of actin filament dynamics?
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Which of the following statements correctly describes the relationship between actin subunit concentration and filament dynamics?
Which of the following statements correctly describes the relationship between actin subunit concentration and filament dynamics?
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What is the significance of nucleotide hydrolysis in actin filament dynamics?
What is the significance of nucleotide hydrolysis in actin filament dynamics?
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In the context of actin filament dynamics, which end of the filament is considered the 'growing' end?
In the context of actin filament dynamics, which end of the filament is considered the 'growing' end?
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What is the primary mechanism by which actin treadmilling occurs?
What is the primary mechanism by which actin treadmilling occurs?
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How does actin treadmilling contribute to the motility of Listeria monocytogenes?
How does actin treadmilling contribute to the motility of Listeria monocytogenes?
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Which of these is NOT a common property of actin and microtubule dynamics?
Which of these is NOT a common property of actin and microtubule dynamics?
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Which of the following is NOT a state associated with actin filament dynamics?
Which of the following is NOT a state associated with actin filament dynamics?
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Which of the following statements accurately describes the relationship between critical concentration (Cc) and elongation rate?
Which of the following statements accurately describes the relationship between critical concentration (Cc) and elongation rate?
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Based on the provided information, which statement accurately compares the elongation rate at the minus end versus the plus end of a filament?
Based on the provided information, which statement accurately compares the elongation rate at the minus end versus the plus end of a filament?
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If the critical concentration at the minus end ($Cc^{-}$) is greater than the critical concentration at the plus end ($Cc^{+}$), what is the expected behavior of the filament in this scenario?
If the critical concentration at the minus end ($Cc^{-}$) is greater than the critical concentration at the plus end ($Cc^{+}$), what is the expected behavior of the filament in this scenario?
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Why is the concept of treadmilling important in understanding filament dynamics?
Why is the concept of treadmilling important in understanding filament dynamics?
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Which of the following factors directly influences the values of $k_{on}$ and $k_{off}$ at each end of the filament?
Which of the following factors directly influences the values of $k_{on}$ and $k_{off}$ at each end of the filament?
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The difference in critical concentration between the plus and minus ends of a filament can be attributed to which of the following?
The difference in critical concentration between the plus and minus ends of a filament can be attributed to which of the following?
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Based on the provided information, what is the correct mathematical equation for calculating the critical concentration at the minus end ($Cc^{-}$)?
Based on the provided information, what is the correct mathematical equation for calculating the critical concentration at the minus end ($Cc^{-}$)?
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Why is the statement "Elongation rate indicates net growth or shrink. This is not the same as the polymerization rate." important in understanding filament dynamics?
Why is the statement "Elongation rate indicates net growth or shrink. This is not the same as the polymerization rate." important in understanding filament dynamics?
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Which component of the cytoskeleton is described as a hollow cylinder?
Which component of the cytoskeleton is described as a hollow cylinder?
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What is a common function of intermediate filaments?
What is a common function of intermediate filaments?
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Which protein is not typically associated with intermediate filaments?
Which protein is not typically associated with intermediate filaments?
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Which cytoskeletal filament is primarily composed of G-actin subunits?
Which cytoskeletal filament is primarily composed of G-actin subunits?
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What structure is likely to have a functional equivalent of a nuclear lamina in plant cells?
What structure is likely to have a functional equivalent of a nuclear lamina in plant cells?
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What is the primary role of microtubules in a cell?
What is the primary role of microtubules in a cell?
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Which cytoskeletal component is responsible for the structure and flexibility of epithelial cells?
Which cytoskeletal component is responsible for the structure and flexibility of epithelial cells?
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What type of cytoskeletal filament is least likely to be found in plant cells?
What type of cytoskeletal filament is least likely to be found in plant cells?
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Flashcards
Microtubules
Microtubules
Hollow cylinders that are part of the cytoskeleton and help in cell shape and division.
Intermediate Filaments
Intermediate Filaments
Rope-like fibers that provide mechanical support to cells and stabilize their structures.
Cytoskeleton
Cytoskeleton
A network of fibers composed of proteins that give shape and support to cells.
Actin Filament (F-actin)
Actin Filament (F-actin)
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Microtubule Composition
Microtubule Composition
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Nuclear Lamina
Nuclear Lamina
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Keratin
Keratin
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Dynamics of F-actin and Microtubules
Dynamics of F-actin and Microtubules
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Nucleotide hydrolase
Nucleotide hydrolase
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G-actin
G-actin
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F-actin
F-actin
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ATPase
ATPase
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GTPase
GTPase
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ATP/GTP cap
ATP/GTP cap
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Polymerization
Polymerization
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Depolymerization
Depolymerization
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Actin polymerization
Actin polymerization
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ATPase activity of Actin
ATPase activity of Actin
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Nucleation
Nucleation
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Fluorescent reporters in Actin studies
Fluorescent reporters in Actin studies
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Sigmoidal reaction curve
Sigmoidal reaction curve
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Stable dimers and trimers
Stable dimers and trimers
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Pyrene-actin signal
Pyrene-actin signal
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Role of salt in polymerization
Role of salt in polymerization
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Elongation Rate
Elongation Rate
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Rate Constant
Rate Constant
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Critical Concentration (Cc)
Critical Concentration (Cc)
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Steady-State
Steady-State
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Polymer Growth
Polymer Growth
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Polymer Shrinkage
Polymer Shrinkage
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Velocity in Calculus
Velocity in Calculus
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Incorporation and Dissociation
Incorporation and Dissociation
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Net Change
Net Change
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Polarity of Actin
Polarity of Actin
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Filament Growth Rate
Filament Growth Rate
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Elongation Rate at Minus End
Elongation Rate at Minus End
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Elongation Rate at Plus End
Elongation Rate at Plus End
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Treadmilling
Treadmilling
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ATP Cap
ATP Cap
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k-on and k-off Rates
k-on and k-off Rates
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Equilibrium in Filaments
Equilibrium in Filaments
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Actin Dynamics
Actin Dynamics
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Plus End
Plus End
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Minus End
Minus End
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Subunit Polymerization
Subunit Polymerization
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Nucleotide Hydrolysis
Nucleotide Hydrolysis
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Listeria Movement
Listeria Movement
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Study Notes
Cytoskeletal Dynamics I
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Cellular Dynamics Module: Focuses on cytoskeletal dynamics.
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Cytoskeleton Components:
- Actin filaments
- Microtubules
- Intermediate filaments
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Mouse Fibroblast Cells: Used in studies of cytoskeletal dynamics.
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Red Blood Cell Production: 100 million new red blood cells are produced every minute.
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Learning Goals:
- Understand shared and different properties of three kinds of cytoskeletons.
- Grasp the common mechanisms of filament polymerization.
- Understand the role of nucleotide hydrolysis in filament dynamics.
- Understand treadmilling.
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Lecture Outline:
- What is the cytoskeleton?
- Common properties of F-actin and microtubule dynamics.
- Actin filament dynamics in vitro (treadmilling).
- Microtubule dynamics in vitro (dynamic instability).
- Accessory proteins controlling filament dynamics in vivo.
- Drugs inhibiting cytoskeletal dynamics.
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Relevant Chapters: MBoC (7th edition) Chapter 16.
Cytoskeletal Filaments
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Three Types: Actin filaments, microtubules, and intermediate filaments.
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Actin Filaments:
- Helical polymers.
- Involved in diverse processes (stress fibres, microvilli, muscle).
- Important component of the cell cortex.
- Crucial for cell shape change, division, and migration.
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Microtubules:
- Hollow cylinders made of tubulin.
- Crucial for cell structure.
- Involved in diverse functions like the mitotic spindle and cilia.
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Intermediate Filaments:
- Rope-like fibres.
- Provide mechanical support.
Cytoskeleton and Disease
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Actin Filaments: Myopathy, hearing loss, neuropathy, cancer, and kidney disease.
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Microtubules: Cardiac disease, ciliopathies, neuropathy, and cancer.
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Intermediate Filaments: Skin disorders, cataracts, neuropathy, and myopathy.
Actin Filaments - Details
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Assembly Types: Helical polymers, stress fibres, microvilli, and muscle.
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Monitoring Polymerization: Pyrene-conjugated G-actin and fluorescent reporters. The Pyrene-actin signal is 25-fold higher in the polymer form.
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Sigmoidal Reaction Curve: Actin polymerization's characteristic curve. The curve exhibits a delay.
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explained by nucleation (lag phase), elongation, and steady-state phases. -nucleation is rate limiting step
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Critical Concentration: The free subunit concentration at steady-state.
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Treadmilling: Actin subunits moving from the plus end to the minus end.
Microtubules - Details
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Cryo-EM Reconstruction: Microtubule structures are reconstructed by cryo-electron microscopy.
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Localization Diversity: Tubules show diverse patterns, including arrays and mitotic spindles.
Intermediate Filaments - Details
- Hair Mutations: Mutations associated with curly hair (dog example).
- Nuclear Lamina: Part of the nuclear envelope, similar to intermediate filament architecture.
Cytoskeleton Fundamentals
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Polymer Structure: Cytoskeletons are polymers of smaller protein subunits.
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Examples of Protein Subunits: Actin(G-actin), a-tubulin, β-tubulin, keratin, vimentin, Neurofilament protein, and Desmin.
iClicker Quiz
- Plant Cells: Intermediate filaments are conspicuously absent.
Common Properties and Dynamics
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Common Properties/Dynamics:
- Subunit polymerization
- Nucleotide hydrolysis
- Plus-end is growing end
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Dynamic Predictions: Critical concentration can predict various states such as growing, shrinking and treadmilling.
ATPase/GTPase Activity
- Significance: Important for both polymerization and depolymerization.
Nucleotide Hydrolysis
- Effect on Depolymerization: Promotes depolymerization as the resulting ADP/GDP form is energetically unstable.
Growing Filaments
- GTP/ATP Caps: Growing filaments typically have a cap of GTP/ATP; this cap promotes continued growth.
Actin Treadmilling
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Driving Force: Actin treadmilling drives the motility of Listeria.
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Future Module: Listeria motility will be studied in a future module.
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Description
This quiz explores key concepts related to actin polymerization and its significance in muscle contraction. It covers topics such as the sigmoidal curve, the roles of ATP and salt, and the impact of nucleation on the polymerization process. Test your understanding of actin's functions in cellular motility and contraction.