Post-Genomics Lecture Notes PDF

POST-GENOMICS AUGUST 27, 2024 SYLLABUS Cross listing BINF5354 STAT5354 STAT6354 MEETING TIMES Lecture: Tuesday from 9 to 10:20 Labs Thursday from 9 to 10:20 CONTACT INFO Dr Jon Mohl CCSB 2.0306 Office Hours: Tuesday 2-3 PM Teaching Assistan...

POST-GENOMICS AUGUST 27, 2024 SYLLABUS Cross listing BINF5354 STAT5354 STAT6354 MEETING TIMES Lecture: Tuesday from 9 to 10:20 Labs Thursday from 9 to 10:20 CONTACT INFO Dr Jon Mohl CCSB 2.0306 Office Hours: Tuesday 2-3 PM Teaching Assistant BE302 Office Hours: Thursday 10:30 – 11:30 AM Reach out to either of us if you need a different time COMMUNICATION Blackboard is the primary way to get announcements and assignments Email me or message me through TEAMS. ADDITIONAL OPTIONAL READING Linear Algebra and Learning from Data by Gilbert Strang (ISBN-13: 978- 0692196380) Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids by R. Durbin, S. Eddy, A. Krogh and G. Mitchison. (ISBN-13: 978- 0521629713) Introduction to Probability Models by Sheldon M. Ross. (ISBN-13: 978- 0443187612) Articles, articles articles… GRADING Homework assignments (50%) Midterm (20%) Group Project (30%) Proposal Final Presentation Final Report ATTENDANCE & CIVILITY Attendance is required Let me know in advance if you are not able to make it Be civil, make sure your phones are on silent and that you are paying attention to whoever is talking COURSE OBJECTIVES Practical Programming (R & Python) Work on Linux machines COURSE OBEJECTIVES Theoretical Linear algebra Probability/Statistics Machine Learning Bioinformatics SO WHY THIS COURSE? PROJECTS Genomics data – from a VCF file