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Questions and Answers
What is the main purpose of recombinant DNA technology?
What is the main purpose of recombinant DNA technology?
Which of the following is NOT a typical application of DNA cloning?
Which of the following is NOT a typical application of DNA cloning?
What is the role of a plasmid in DNA cloning?
What is the role of a plasmid in DNA cloning?
What type of DNA is typically used for cloning in the laboratory?
What type of DNA is typically used for cloning in the laboratory?
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What process is referred to as gene cloning?
What process is referred to as gene cloning?
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Which enzyme is primarily involved in linking DNA fragments during recombinant DNA technology?
Which enzyme is primarily involved in linking DNA fragments during recombinant DNA technology?
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What characteristics are typically required for a plasmid vector?
What characteristics are typically required for a plasmid vector?
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Which of the following is NOT required for a plasmid to be used in research?
Which of the following is NOT required for a plasmid to be used in research?
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What happens after the recombinant plasmid is inserted into a bacterial cell?
What happens after the recombinant plasmid is inserted into a bacterial cell?
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Which enzyme is used to join DNA fragments in creating a recombinant plasmid?
Which enzyme is used to join DNA fragments in creating a recombinant plasmid?
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Study Notes
Recombinant DNA Technology
- Recombinant DNA is formed by combining DNA segments from different sources, often different species.
- This process frequently combines DNA sequences that wouldn't normally occur together.
- Recombinant DNA is made in vitro, meaning it’s created in a lab setting, and placed in a single DNA molecule.
- Paul Berg won a Nobel Prize in 1980 for his crucial work on the biochemistry of nucleic acids, specifically related to recombinant DNA.
Learning Outcomes
- Students will gain a general understanding of DNA recombination and gene cloning.
- Students will understand the role of restriction endonucleases and DNA ligases.
- Students will learn the key requirements for a plasmid vector.
- Students will be able to outline the characteristics of host cells suitable for recombinant DNA technology.
- Students will gain examples of applications using recombinant DNA technology.
DNA (Gene) Cloning
- cDNA is often used rather than the whole gene.
- cDNA is created from mRNA, as explained in previous lectures.
- The primary purpose is to create multiple copies of a gene, or its encoded protein, for various biological studies or applications.
- This process typically does not involve PCR.
Applications of DNA Cloning
- Basic bioscience research for analyzing protein structures and building models.
- Medical advancements in developing gene therapies and vaccines.
- Agricultural applications focused on plant modification, livestock (mammals and fish) improvement.
- Biotechnology applications covering pharmaceuticals (antibodies, enzymes, other proteins), along with industrial chemicals.
DNA Cloning: A Preview
- Laboratory methods share common features, such as using bacteria and their plasmids, along with specific enzymes.
- Plasmids are small, circular DNA molecules that replicate independently of the bacterial chromosome.
- Cloning DNA is useful for making copies of genes and producing proteins.
- Bacteria are used as host cells to create numerous copies of a gene.
DNA Cloning: A Detailed Preview
- Foreign DNA is inserted into a plasmid, which is then introduced into a bacterial cell.
- Replication within the bacterial cell clones the plasmid, including the foreign DNA.
- This process creates multiple copies of a single gene or DNA segment.
- Recombinant plasmids enable the creation of tools for more complex genetic engineering applications, such as GMO manipulation.
The Process Overview
- The cloning vector (plasmid) is cut with restriction endonuclease.
- The DNA fragment of interest is isolated by cleaving the chromosome with restriction endonuclease.
- The fragments are then ligated to the prepared cloning vector using DNA ligase.
- The recombinant vector is introduced into a host cell for replication.
- The replication creates large numbers of copies of recombinant DNA.
The Plasmid
- Plasmids are also known as vectors.
- Plasmids are originally small, independent bacterial DNA that can be shared and transferred (e.g., antibiotic resistance).
- These molecules replicate independently of the main bacterial chromosome.
- Today, plasmids are extensively modified for various research purposes (e.g., containing specialized vectors found at the Addgene website).
- Plasmids used in research must have fundamental properties essential for research applications.
Example of a Plasmid
- A multi-cloning site (MCS) is a region within a plasmid vector designed for inserting foreign DNA segments.
- The MCS contains many unique restriction enzyme sites.
- This allows researchers to insert genes or other DNA fragments at specific locations dictated by the choice of restriction enzyme site.
- An origin of replication is a region within a plasmid molecule that is essential for autonomous replication of the plasmid in a bacterial host cell..
The Recombinant Plasmid
- DNA fragments are joined using complementary ends and DNA ligase.
- The result is a recombinant plasmid containing the gene(s) of interest and other necessary components.
Recombinant plasmid into host bacterium
- Recombinant plasmid is introduced into a bacterial host cell via transformation process.
- This procedure does not involve reproduction.
Bacterial Host Cells
- The species of E. coli are a common choice for host cells in DNA cloning.
- Often, highly specialized host cells are used to produce pure/high quality recombinant DNA.
- Many different strains of E. coli have been developed and are commonly used in DNA cloning, all are highly modified.
Bacteria as Model Organisms
- Bacteria are often chosen due to their affordability and rapid growth.
- They're easy to manipulate and analyze in the lab.
- They often contain a collection of modified strains, which simplifies research procedures.
- The downsides include the lack of a complex RNA splicing and protein modification machinery found in eukaryotic cells – which can make them unsuitable for certain experiments.
DNA Amplified by PCR
- DNA from various sources can be amplified via polymerase chain reaction (PCR). These can include plants.
- Restriction enzymes are used to cut the DNA and then ligation, which links the different DNA fragments.
- A separate set of enzymes are used to insert the fragments into the plasmid or vector.
- This is then used to create numerous copies of the recombinant DNA.
Applications
- Recombinant DNA technology is applied to drug development, animal models, genetic engineering of organisms, and industrial protein production.
- These applications cover a broad spectrum of fields like medicine, agriculture, and the development of industrial products.
CRISPR/Cas9 and Genome Editing
- CRISPR-Cas9 technology simplifies and reduces costs for genome editing in eukaryotic organisms.
- This method allows removing replacing genes and portions of genes – unlike the more traditional techniques.
- CRISPR-Cas9 technology derived from a prokaryotic immune system against viruses.
- This tool allows targeted introduction of DNA segments into organisms.
- Researchers can manipulate DNA in different organisms using this technique.
- The process of repairing cell DNA after a CRISPR-Cas9 cut is essential for effective genome editing.
- Different mechanisms or methods can be used for this.
Repair Mechanisms in CRISPR/Cas9
- Non-Homologous End Joining
- Homology Directed Repair
Summary of Recombinant DNA Technology
- The goal of recombinant DNA technology is creating many copies of a specific gene (or cDNA).
- The DNA is inserted into a host cell using a vector, which is cut to incorporate the desired DNA.
- DNA fragment sizes are verified using gel electrophoresis.
- Successful introduction of recombinant DNA can be monitored using reporter genes (e.g., antibiotic resistance).
Summary of Recombinant DNA Manipulation
- Recombinant DNA and its manipulation are essential parts of bioscience research.
- This process is furthered by specialized E. coli containing plasmids (vectors).
- Modern genetic engineering is constantly improving and expanding to encompass new methods and applications.
- Recombinant DNA technology is applied across numerous fields of life.
- The ethical and safety issues concerning the use of recombinant DNA techniques must be carefully analyzed and addressed before implementation.
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