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What is taxonomy?
What is taxonomy?
Taxonomy is the classification, description, identification, and naming of living organisms.
Who introduced Linnaean taxonomy?
Who introduced Linnaean taxonomy?
What is the most specific and basic taxonomic unit?
What is the most specific and basic taxonomic unit?
Species
The original kingdom for Linnaean taxonomy included animal, plant, mineral, and bacteria.
The original kingdom for Linnaean taxonomy included animal, plant, mineral, and bacteria.
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What does the human microbiome map reveal about the distribution of microbes in the body?
What does the human microbiome map reveal about the distribution of microbes in the body?
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Microbiomes vary based on lifestyle, diet, and environmental factors.
Microbiomes vary based on lifestyle, diet, and environmental factors.
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What is binomial nomenclature?
What is binomial nomenclature?
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What are two examples of naming conventions in binomial nomenclature?
What are two examples of naming conventions in binomial nomenclature?
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From which languages are the names of organisms typically derived?
From which languages are the names of organisms typically derived?
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Most microorganisms are multicellular.
Most microorganisms are multicellular.
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What are the two main categories of organisms based on cell structure?
What are the two main categories of organisms based on cell structure?
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What are the characteristics of prokaryotic organisms?
What are the characteristics of prokaryotic organisms?
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What are two examples of prokaryotic microorganisms?
What are two examples of prokaryotic microorganisms?
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Bacteria are found in almost every habitat on Earth.
Bacteria are found in almost every habitat on Earth.
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What are some examples of shapes found in bacteria?
What are some examples of shapes found in bacteria?
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Which of the following describe the types of metabolism found in bacteria?
Which of the following describe the types of metabolism found in bacteria?
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Archaea usually have cell walls composed of peptidoglycan.
Archaea usually have cell walls composed of peptidoglycan.
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Where are archaea commonly found?
Where are archaea commonly found?
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Archaea are a known cause of human pathogens.
Archaea are a known cause of human pathogens.
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What are some examples of protists?
What are some examples of protists?
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What are some examples of fungi?
What are some examples of fungi?
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Viruses are considered to be cellular organisms.
Viruses are considered to be cellular organisms.
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What do viruses consist of?
What do viruses consist of?
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Viruses can only infect certain types of cells.
Viruses can only infect certain types of cells.
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What are some ways that pathogenic microorganisms can be spread through the air?
What are some ways that pathogenic microorganisms can be spread through the air?
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What are some other ways that pathogenic microorganisms can be spread?
What are some other ways that pathogenic microorganisms can be spread?
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What is symbiosis?
What is symbiosis?
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What is mutualism?
What is mutualism?
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Describe a mutualistic relationship discussed in the text.
Describe a mutualistic relationship discussed in the text.
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Explain the relationship between Lucilia sericata and Staphylococcus aureus as an example of amensalism.
Explain the relationship between Lucilia sericata and Staphylococcus aureus as an example of amensalism.
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What is commensalism?
What is commensalism?
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Much our microbiome consists of commensals.
Much our microbiome consists of commensals.
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What is parasitism?
What is parasitism?
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What are some categories of dysbiosis?
What are some categories of dysbiosis?
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Dysbiosis can lead only to digestive issues, not other health issues.
Dysbiosis can lead only to digestive issues, not other health issues.
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Study Notes
Taxonomy
- Taxonomy is the science of classifying, describing, identifying, and naming living organisms
- Carolus Linnaeus introduced Linnaean taxonomy in 1735, organizing organisms into hierarchical levels like kingdom, class, order, family, genus, and species.
- Species is the most specific and basic taxonomic unit.
- Initially, the kingdoms in this taxonomy were animal, plant, and mineral.
Human Microbiome Map
- Points closer together on a map represent more similar microbiomes
- Points further apart represent more dissimilar microbiomes
- Different body parts have distinct microbiomes
- Microbiomes vary depending on lifestyle, diet, and environmental factors.
Naming Microbes
- Microbes are named using binomial nomenclature (two-word naming system), using the genus (capitalized) and species (not capitalized) names, both italicized.
- Names are derived from Latin, Greek or English.
Types of Microorganisms
- Microorganisms vary in size, structure, habitat, and metabolism.
- Most are unicellular.
Prokaryotic vs Eukaryotic
-
Prokaryotes:
- Single-celled
- Lack a nucleus
- Single circular chromosome
- Lacks organelles
-
Eukaryotes:
- Single or multicellular
- Contain a nucleus
- DNA consists of multiple linear chromosomes
- Contains organelles
Prokaryotic Microorganisms (Bacteria & Archaea)
-
Bacteria:
- Found in various habitats
- Shapes include spherical (coccus), rod-shaped (bacillus), curved (vibrio, spirillum, spirochete).
- Metabolism can be photosynthetic (e.g., cyanobacteria) or non-photosynthetic.
-
Archaea:
- A distinct group
- Exhibit varied metabolism
Eukaryotic Microorganisms
-
Protists:
- Examples include Algae (photosynthetic, cell walls of cellulose), and Protozoa (diverse and motile).
-
Fungi:
- Include yeasts (unicellular, used in food production) and molds (multicellular, decomposers). Some produce antibiotics.
Viruses
- Acellular (no cells)
- Consist of proteins and genetic material (RNA or DNA)
- Can infect all types of cells
Microbial Sources of Infection
- Water: Contaminated drinking water or recreational water sources
- Food: Improperly cooked or contaminated food
- Surfaces: Contaminated objects or surfaces (fomites)
- Soil: Soil contaminated with pathogens, especially in agricultural settings.
- Animals: Direct contact with infected animals or their waste products
- Human Contact: Direct contact with infected individuals, bodily fluids, and sexual contact.
Symbiosis
- Symbiosis describes organisms living together closely.
Mutualism
- A type of symbiosis where both populations benefit.
- Example: Escherichia coli in the large intestine produces Vitamin K and gets nutrients from the host.
Amensalism
- A type of symbiosis where one population is harmed, and the other is unaffected.
Commensalism
- One population benefits, and the other is unaffected.
- Example: Staphylococcus epidermis residing on our skin benefits, while the host isn't affected or harmed.
Neutralism
- Both populations are unaffected by the interaction.
Parasitism
- One organism benefits (the parasite), while the other is harmed (the host).
- Example: Disease-causing bacteria, viruses, fungi, etc., like Salmonella, Vibrio cholerae, Helicobacter pylori, and Hepatitis B.
Dysbiosis
- An imbalance in the microbial community, particularly in the gut.
- This can lead to various disease conditions caused by categories like:
- Loss of beneficial organisms
- Excessive growth of harmful organisms
- Loss of overall microbial diversity
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