Survival Analysis: Kaplan-Meier and Cox Regression
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Questions and Answers

What is the primary function of the aes function in ggplot?

  • To map variables to aesthetics (correct)
  • To specify the data frame
  • To create a bar chart
  • To calculate summary statistics
  • What does the after_stat function do in ggplot?

  • It calculates the mean of the data
  • It creates a new aesthetic mapping
  • It removes missing values from the data
  • It computes a statistic after the data has been processed (correct)
  • What is the purpose of the theme_bw function in ggplot?

  • To add a title to the plot
  • To change the color scheme of the plot
  • To modify the axis labels
  • To create a black and white theme for the plot (correct)
  • What is the result of the code count(continent) %>% mutate(perc = n/sum(n) * 100)?

    <p>A table with the count and proportion of each continent</p> Signup and view all the answers

    What does the scale_colour_grey function do in ggplot?

    <p>It changes the color scheme of the plot to grey</p> Signup and view all the answers

    What is the purpose of the group = 1 argument in the geom_bar function?

    <p>To ensure that the bars are not stacked</p> Signup and view all the answers

    What is the result of the code gapminder2 %&gt;% count(continent)?

    <p>A table with the count of each continent</p> Signup and view all the answers

    What is the purpose of the mutate function in the code gapminder2 %&gt;% count(continent) %&gt;% mutate(perc = n/sum(n) * 100)?

    <p>To create a new column with the proportion of each continent</p> Signup and view all the answers

    What is the purpose of removing observations with missing values for the variable cat_fbs?

    <p>To ensure that the data is complete</p> Signup and view all the answers

    What is the result of the code count(cat_fbs)?

    <p>A table with the count of each category of <code>cat_fbs</code></p> Signup and view all the answers

    Study Notes

    Survival Analysis

    • Survival analysis is also known as duration analysis or time-to-event analysis.
    • It's useful in follow-up studies where participants or patients are followed up until they develop the event of interest.
    • Examples of such studies include retrospective cohort or prospective cohort studies.
    • Survival analysis can be applied to any study that involves both the duration of follow-up and the event of interest.

    Types of Survival Analysis

    • There are three main types of survival analysis:
      • Non-parametric survival analysis (e.g. Kaplan-Meier estimates)
      • Semi-parametric survival analysis (e.g. Cox proportional hazards regression)
      • Parametric survival analysis (e.g. Weibull parametric survival analysis)

    Kaplan-Meier Estimates

    • Kaplan-Meier estimates are used in non-parametric survival analysis.
    • They are often performed at the beginning of an analysis to understand the trend of survival probabilities.

    Cox Proportional Hazards (PH) Regression

    • Cox PH regression is a type of semi-parametric survival analysis.
    • It can be used for simple (univariable) or multiple (multivariable) regression analysis.

    R Studio Project

    • It is recommended to start a new analysis project by creating a new RStudio project.

    Data Visualization

    • ggplot can be used to create plots, such as bar charts and histograms.
    • The y-axis can be adjusted to show proportions by using the after_stat function.

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    Description

    This quiz covers the concepts of survival analysis, Kaplan-Meier estimates, and Cox regression, including objectives and recommended readings from epidemiology and statistics books.

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