Lecture 14

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Questions and Answers

What determines the distinct properties of individual proteins?

  • The peptide bond
  • The amino acid side chains (correct)
  • The polypeptide structure
  • The 3D structure

What is the stable spatial arrangement of polypeptide chain segments held together by hydrogen bonds between backbone groups called?

  • Quaternary structure
  • Primary structure
  • Secondary structure (correct)
  • Tertiary structure

How is the alpha helix stabilized?

  • By hydrogen bonds between backbone oxygen and hydrogen atoms (correct)
  • By disulfide bonds
  • By ionic interactions between R groups
  • By van der Waals interactions

Which complex contains 20 subunits?

<p>Mediator complex (A)</p> Signup and view all the answers

What is the function of enzymes in cell reactions?

<p>To stabilize transition state intermediates (B)</p> Signup and view all the answers

Which enzyme catalyzes the breaking of peptide bonds?

<p>Trypsin (D)</p> Signup and view all the answers

How do enzymes regulate protein activity?

<p>By phosphorylation (B)</p> Signup and view all the answers

What is the role of E3 Ub ligase in protein degradation?

<p>It transfers Ub to cysteine residue in E2 (A)</p> Signup and view all the answers

What is the main function of phosphatases?

<p>To inactivate proteins (D)</p> Signup and view all the answers

Where does proteolysis occur within the proteasome?

<p>In the core formed by beta rings (C)</p> Signup and view all the answers

What is the role of the Mediator complex?

<p>To assemble at gene promoters (B)</p> Signup and view all the answers

What type of motif consists of 2 alpha helices wound around each other?

<p>Coiled-coil motif (B)</p> Signup and view all the answers

What is the primary stabilizing force in the tertiary structure of proteins?

<p>Hydrophobic interactions (C)</p> Signup and view all the answers

Which amino acid is commonly found in beta turns due to its small R group?

<p>Glycine (D)</p> Signup and view all the answers

Which secondary structure is stabilized by hydrogen bonds between backbone oxygen and hydrogen atoms in amino acids on different strands?

<p>Antiparallel beta sheet (A)</p> Signup and view all the answers

What is the characteristic feature of the structure of a beta turn?

<p>Reverses the direction of a polypeptide chain (D)</p> Signup and view all the answers

What is the role of prolines in alpha helices?

<p>They are usually excluded from alpha helices (D)</p> Signup and view all the answers

Which representation emphasizes how beta strands and alpha helices are organized in a protein?

<p>Ribbon diagram (B)</p> Signup and view all the answers

What is the size range of supramolecular complexes in proteins?

<p>10s to 100s of polypeptide chains (C)</p> Signup and view all the answers

What is the tertiary structure of unactivated Hemagglutinin (HA) characterized by?

<p>Proximal helix with terminal fusion peptide domain folded back into stalk of structure (D)</p> Signup and view all the answers

What do EGF domains in proteins like Neu and Tissue plasminogen activator (TPA) contain?

<p>EGF domain plus other domains (C)</p> Signup and view all the answers

What type of motif is present in many DNA-binding proteins that help regulate transcription?

<p>Zinc-finger motif (B)</p> Signup and view all the answers

What is the driving force for hydrophobic residues to cluster together in the folded protein core?

<p>Hydrophobic effect (C)</p> Signup and view all the answers

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