Lecture 14

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What determines the distinct properties of individual proteins?

The amino acid side chains

What is the stable spatial arrangement of polypeptide chain segments held together by hydrogen bonds between backbone groups called?

Secondary structure

How is the alpha helix stabilized?

By hydrogen bonds between backbone oxygen and hydrogen atoms

Which complex contains 20 subunits?

Mediator complex

What is the function of enzymes in cell reactions?

To stabilize transition state intermediates

Which enzyme catalyzes the breaking of peptide bonds?

Trypsin

How do enzymes regulate protein activity?

By phosphorylation

What is the role of E3 Ub ligase in protein degradation?

It transfers Ub to cysteine residue in E2

What is the main function of phosphatases?

To inactivate proteins

Where does proteolysis occur within the proteasome?

In the core formed by beta rings

What is the role of the Mediator complex?

To assemble at gene promoters

What type of motif consists of 2 alpha helices wound around each other?

Coiled-coil motif

What is the primary stabilizing force in the tertiary structure of proteins?

Hydrophobic interactions

Which amino acid is commonly found in beta turns due to its small R group?

Glycine

Which secondary structure is stabilized by hydrogen bonds between backbone oxygen and hydrogen atoms in amino acids on different strands?

Antiparallel beta sheet

What is the characteristic feature of the structure of a beta turn?

Reverses the direction of a polypeptide chain

What is the role of prolines in alpha helices?

They are usually excluded from alpha helices

Which representation emphasizes how beta strands and alpha helices are organized in a protein?

Ribbon diagram

What is the size range of supramolecular complexes in proteins?

10s to 100s of polypeptide chains

What is the tertiary structure of unactivated Hemagglutinin (HA) characterized by?

Proximal helix with terminal fusion peptide domain folded back into stalk of structure

What do EGF domains in proteins like Neu and Tissue plasminogen activator (TPA) contain?

EGF domain plus other domains

What type of motif is present in many DNA-binding proteins that help regulate transcription?

Zinc-finger motif

What is the driving force for hydrophobic residues to cluster together in the folded protein core?

Hydrophobic effect

Test your knowledge of polypeptide structure and proteins with this quiz. Explore the role of amino acid side chains, peptide bonds, and the properties of different proteins.

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