Protein Structure and Functional Role Hypothesis Quiz

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Questions and Answers

What is the purpose of stacking the gel on top of a membrane after the initial electrophoresis?

  • To amplify the signal from secondary antibodies
  • To block the membrane with an inert protein
  • To migrate protein bands onto the membrane (correct)
  • To expose the membrane to primary antibodies

What is the function of the inert protein used in blocking the membrane?

  • Bind all areas of the membrane not already bound by protein bands (correct)
  • Amplify the signal from primary antibodies
  • Prevent migration of proteins on the gel
  • Enhance the enzymatic reaction of the secondary antibodies

What is the purpose of exposing the membrane to primary antibodies specific to the protein of interest in a Western blot?

  • Amplify the signal from secondary antibodies
  • Bind specifically to the primary antibodies (correct)
  • Couple to an enzyme system
  • Remove unbound antibodies

What kind of reaction does the covalently linked enzyme (e.g., horseradish peroxidase) perform in Western blot upon addition of a specific substrate?

<p>Color reaction (D)</p> Signup and view all the answers

What do the dark bands on an SDS-PAGE gel stained with Coomassie represent?

<p>All proteins in the mixture (A)</p> Signup and view all the answers

How does western blotting aid in determining if a specific protein is present in a sample?

<p>By blotting with anti-protein kinase antibodies (A)</p> Signup and view all the answers

What happens when a stop codon is encountered in the A-site during translation?

<p>Translation is terminated (C)</p> Signup and view all the answers

What happens to the ribosome after termination of translation?

<p>It dissociates and releases the newly formed protein (D)</p> Signup and view all the answers

How is the growing peptide transferred during elongation?

<p>It is transferred to the A-site tRNA (A)</p> Signup and view all the answers

What is the primary function of the extra positively-charged amino acids on the surface of marine animals' myoglobin?

<p>To help repel neighboring molecules and prevent aggregation (D)</p> Signup and view all the answers

Which hormone acts on the liver to promote glycogen breakdown and gluconeogenesis when blood glucose levels are low?

<p>Glucagon (C)</p> Signup and view all the answers

Which type of hormone is insulin?

<p>Peptide (D)</p> Signup and view all the answers

Which type of hormone travels through the bloodstream?

<p>Hormones (D)</p> Signup and view all the answers

Which hormone promotes the generation of energy in the form of ATP in muscle when it is required for exercise?

<p>Epinephrine (B)</p> Signup and view all the answers

What is the functional role of the hydrogen bond between the hydrogen atom attached to nitrogen of a peptide linkage and the carbonyl atom of the fourth amino acid?

<p>It stabilizes the protein structure (C)</p> Signup and view all the answers

What is the geometric constriction due to in an alpha helix?

<p>The requirement of the carbonyl oxygen of residue i to be hydrogen bonded to the amide nitrogen of residue i + 4 (B)</p> Signup and view all the answers

What is the overall dipole moment in an alpha helix?

<p>The amide N-H bonds are polarized and the carbonyls are also polarized (D)</p> Signup and view all the answers

What is the directionality in an alpha helix?

<p>The amino terminus and carboxyl terminus (C)</p> Signup and view all the answers

Which amino acid has the greatest tendency to form into an alpha helix?

<p>Alanine (A)</p> Signup and view all the answers

How can the free energy change of each amino acid be measured?

<p>Comparing it to the free energy change of alanine (D)</p> Signup and view all the answers

What is the end product of glycolysis?

<p>Pyruvate (C)</p> Signup and view all the answers

Which enzyme catalyzes the conversion of glucose-1-phosphate to glucose-6-phosphate for entry into glycolysis?

<p>Phosphoglucomutase (C)</p> Signup and view all the answers

What initiates the breakdown of glycogen by catalyzing the phosphorolysis process?

<p>Glycogen phosphorylase (D)</p> Signup and view all the answers

Which molecule is used as energy by glycogen synthase during the synthesis of glycogen?

<p>UTP (D)</p> Signup and view all the answers

What signal indicates to store available glucose as glycogen?

<p>High concentrations of glucose-6-phosphate (D)</p> Signup and view all the answers

Which molecule is first produced in the tricarboxylic acid cycle and signals enough substrate for the cycle to proceed?

<p>Citrate (A)</p> Signup and view all the answers

What is responsible for down-regulating glycolysis when ATP levels are adequate?

<p>End-product inhibition by ATP (B)</p> Signup and view all the answers

What stimulates the dephosphorylation of enzymes by phosphatase in glycogen metabolism?

<p>Insulin (B)</p> Signup and view all the answers

Which enzyme catalyzes the synthesis of glycogen from glucose-1-phosphate?

<p>Glycogen synthase (A)</p> Signup and view all the answers

What does phosphoglucomutase convert glucose-1-phosphate to, during glycogen breakdown?

<p>Glucose-6-phosphate (C)</p> Signup and view all the answers

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