Podcast
Questions and Answers
What does a qualitative ELISA determine?
What does a qualitative ELISA determine?
- The exact concentration of an antibody in a sample
- The titer of a particular antibody
- The presence of multiple analytes simultaneously
- The presence or absence of an antigen or antibody (correct)
In a multiplex immunoassay, how is the specific identification of analytes achieved?
In a multiplex immunoassay, how is the specific identification of analytes achieved?
- Through the use of a single laser to measure fluorescence intensity only
- By mixing all samples and measuring the total fluorescence together
- By associating different analytes with unique bead regions that have distinct spectral signatures (correct)
- By using a single type of fluorescent dye for all beads
What role does streptavidin-phycoerythrin (PE) play in the multiplex immunoassay process?
What role does streptavidin-phycoerythrin (PE) play in the multiplex immunoassay process?
- It labels the beads to identify various analytes
- It washes away unbound materials from the beads
- It acts as a reporter to indicate the magnitude of the analyte binding (correct)
- It quantifies the concentration of antibodies in the sample
What feature of a bead-based multiplex immunoassay allows for the detection of up to 100 analytes at once?
What feature of a bead-based multiplex immunoassay allows for the detection of up to 100 analytes at once?
What does the titer in a quantitative ELISA represent?
What does the titer in a quantitative ELISA represent?
What is the primary function of the enzyme-linked immunosorbent assay (ELISA)?
What is the primary function of the enzyme-linked immunosorbent assay (ELISA)?
In the workflow of proteomics, which step immediately follows the sample stage?
In the workflow of proteomics, which step immediately follows the sample stage?
Which of the following is not a type of ELISA?
Which of the following is not a type of ELISA?
How do the results of an ELISA test typically present?
How do the results of an ELISA test typically present?
What is the reason for using 96 well plates in ELISA assays?
What is the reason for using 96 well plates in ELISA assays?
Which technique is considered a high-throughput method in proteomics?
Which technique is considered a high-throughput method in proteomics?
What is the role of the substrate in an ELISA assay?
What is the role of the substrate in an ELISA assay?
Which of these components is meant to specifically recognize the antigen during an ELISA?
Which of these components is meant to specifically recognize the antigen during an ELISA?
What is the primary purpose of measuring retention time in liquid chromatography?
What is the primary purpose of measuring retention time in liquid chromatography?
What is NOT an advantage of liquid chromatography?
What is NOT an advantage of liquid chromatography?
In gas chromatography, what is the role of the mobile phase?
In gas chromatography, what is the role of the mobile phase?
Which gas is most commonly used as a mobile phase in gas chromatography due to its low molecular weight?
Which gas is most commonly used as a mobile phase in gas chromatography due to its low molecular weight?
What technique is used to identify the amount and type of chemicals in a sample through the analysis of ions?
What technique is used to identify the amount and type of chemicals in a sample through the analysis of ions?
Which of the following is NOT a characteristic of the stationary phase in gas chromatography?
Which of the following is NOT a characteristic of the stationary phase in gas chromatography?
What is measured in mass spectrometry to help identify chemicals in a sample?
What is measured in mass spectrometry to help identify chemicals in a sample?
Which technique would most likely be used for analyzing small molecular weight compounds?
Which technique would most likely be used for analyzing small molecular weight compounds?
What is the formula for calculating the m/z ratio?
What is the formula for calculating the m/z ratio?
Which ionization method forms singly charged ions?
Which ionization method forms singly charged ions?
What does the MS/MS approach in tandem mass spectrometry mainly measure?
What does the MS/MS approach in tandem mass spectrometry mainly measure?
During Protein Identification by Peptide Mass Fingerprinting (PMF), what is the role of endoprotease?
During Protein Identification by Peptide Mass Fingerprinting (PMF), what is the role of endoprotease?
Which of the following approaches is NOT used for quantitative proteomics?
Which of the following approaches is NOT used for quantitative proteomics?
What characteristic does Electrospray Ionization (ESI) provide to ions formed?
What characteristic does Electrospray Ionization (ESI) provide to ions formed?
What is the purpose of comparing the peak list of peptides from MS analysis?
What is the purpose of comparing the peak list of peptides from MS analysis?
What is an advantage of isotope labeling in mass spectrometry?
What is an advantage of isotope labeling in mass spectrometry?
What does an increase in salivary pro-inflammatory IL-1β and TNF-α indicate in COVID-19 patients?
What does an increase in salivary pro-inflammatory IL-1β and TNF-α indicate in COVID-19 patients?
What type of chromatography is associated with a polar stationary phase and a non-polar solvent?
What type of chromatography is associated with a polar stationary phase and a non-polar solvent?
How is the concentration of a component determined in mass spectrometry-based proteomics?
How is the concentration of a component determined in mass spectrometry-based proteomics?
In a proteomics workflow, which instrument is primarily responsible for the detection phase?
In a proteomics workflow, which instrument is primarily responsible for the detection phase?
What is a primary characteristic of High Performance Liquid Chromatography (HPLC)?
What is a primary characteristic of High Performance Liquid Chromatography (HPLC)?
Which of the following techniques can be used for detection during proteomic analysis?
Which of the following techniques can be used for detection during proteomic analysis?
What is the primary role of the mobile phase in liquid chromatography?
What is the primary role of the mobile phase in liquid chromatography?
What does the peak area in chromatography indicate?
What does the peak area in chromatography indicate?
Which pro-inflammatory cytokines were found to be elevated in COVID-19 patients according to the immunoassay results?
Which pro-inflammatory cytokines were found to be elevated in COVID-19 patients according to the immunoassay results?
What is a disadvantage of using normal phase chromatography?
What is a disadvantage of using normal phase chromatography?
Which method is suitable for measuring electrical signals during chromatographic detection?
Which method is suitable for measuring electrical signals during chromatographic detection?
What component is specifically compared to measure the concentration of a target in chromatography?
What component is specifically compared to measure the concentration of a target in chromatography?
What is implied by high levels of IL-6 in COVID-19 patients?
What is implied by high levels of IL-6 in COVID-19 patients?
What distinguishes reverse phase from normal phase liquid chromatography?
What distinguishes reverse phase from normal phase liquid chromatography?
Flashcards
Qualitative ELISA
Qualitative ELISA
A laboratory test that determines if a specific antigen or antibody is present in a sample. It provides a yes/no answer.
Quantitative ELISA
Quantitative ELISA
A laboratory test that measures the amount (concentration) of a specific antigen or antibody in a sample.
Titer
Titer
The highest dilution of a sample (usually serum) that still gives a positive result in a test.
Multiplex Immunoassay
Multiplex Immunoassay
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Color-coded microspheres (beads) in multiplex immunoassay
Color-coded microspheres (beads) in multiplex immunoassay
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What is the proteome?
What is the proteome?
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What is proteomics?
What is proteomics?
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What is a proteomics workflow?
What is a proteomics workflow?
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What is ELISA?
What is ELISA?
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What are Antibody-based methods in proteomics?
What are Antibody-based methods in proteomics?
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What are Protein Separation Techniques?
What are Protein Separation Techniques?
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What are Protein Detection Methods?
What are Protein Detection Methods?
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What is protein identification?
What is protein identification?
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Retention Time in LC
Retention Time in LC
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Degree of Separation in LC
Degree of Separation in LC
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Liquid Chromatography (LC)
Liquid Chromatography (LC)
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Advantages Of LC
Advantages Of LC
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Mobile Phase in Gas Chromatography
Mobile Phase in Gas Chromatography
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Mass Spectrometry (MS)
Mass Spectrometry (MS)
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Gas Chromatography (GC)
Gas Chromatography (GC)
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Stationary Phase in GC
Stationary Phase in GC
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m/z ratio
m/z ratio
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Mass Spectrometry
Mass Spectrometry
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Proteomics
Proteomics
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Protein Separation
Protein Separation
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Electrospray Ionization (ESI)
Electrospray Ionization (ESI)
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Matrix Assisted Laser Desorption Ionization (MALDI)
Matrix Assisted Laser Desorption Ionization (MALDI)
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Ion Trap
Ion Trap
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High Performance Liquid Chromatography (HPLC)
High Performance Liquid Chromatography (HPLC)
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Tandem Mass Spectrometry (MS/MS)
Tandem Mass Spectrometry (MS/MS)
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Reverse Phase Chromatography
Reverse Phase Chromatography
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Protein Identification by Peptide Mass Fingerprinting (PMF)
Protein Identification by Peptide Mass Fingerprinting (PMF)
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Normal Phase Chromatography
Normal Phase Chromatography
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Isotope Labeling
Isotope Labeling
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Mass Spectrometer
Mass Spectrometer
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Peak Area
Peak Area
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Standard Reference
Standard Reference
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Inflammatory Response
Inflammatory Response
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Interleukin-1 (IL-1β)
Interleukin-1 (IL-1β)
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Tumor Necrosis Factor-alpha (TNF-α)
Tumor Necrosis Factor-alpha (TNF-α)
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COVID-19 Inflammatory Profile
COVID-19 Inflammatory Profile
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Sample Collection
Sample Collection
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Study Notes
Protein Separation and Identification Techniques
- Techniques used to identify and separate proteins are crucial in various fields, including proteomics.
- Proteome complexity arises from the large number of proteins in an organism, which vary in size, charge, and structure.
- The genome encompasses ~20-25,000 genes.
- The transcriptome represents ~100,000 transcripts.
- The proteome comprises >1,000,000 proteins.
Proteomics Workflow
- Proteomics involves a systematic analysis of the entire protein complement (proteome) of a biological sample.
- The workflow begins with sample preparation, followed by protein extraction and separation.
- Sample extraction methods include mechanical, chemical, and enzymatic cell disruption.
- Separation techniques include chromatography, such as centrifugation and electrophoresis.
- Characterization and analysis of the separated molecules use techniques like NMR, X-ray crystallography, mass spectrometry, and circular dichroism.
- Identification of the proteins uses various methods, including antibody-based and mass spectrometry techniques.
- Functional analysis, as well as structural analysis, are subsequent stages.
ELISA (Enzyme-Linked Immunosorbent Assay)
- ELISA is an immunological assay used for detecting antibodies, antigens, proteins, and glycoproteins in biological samples.
- Invented by Engvall and Perlman in 1971, ELISA was the first common test for HIV diagnosis.
- Different ELISA types exist, including direct, indirect, sandwich, and competitive ELISAs.
- ELISA typically employs 96-well plates for multiple sample analysis.
Multiplex Immunoassay
- This bead-based immunoassay enables simultaneous detection of up to 100 different analytes.
- Color-coded microspheres enable distinct spectral signatures.
- It's used for assessing cytokines and biomarkers in biological samples.
Mass Spectrometry-Based Proteomics
- Mass spectrometry is a technique used to identify protein constituents in biological samples.
- Liquid Chromatography (LC) separates protein components.
- HPLC (High-Performance Liquid Chromatography): a sub-type of LC
- Gas Chromatography (GC) also used in proteomics
- Mass spectrometer detects and measures fragments' mass-to-charge ratio (m/z).
- Various ionization methods exist, including Electron Ionization (EI), Chemical ionization (CI), Fast Atom Bombardment (FAB), Matrix-Assisted Laser Desorption Ionization (MALDI), and Electrospray Ionization (ESI).
- Tandem mass spectrometry (MS/MS) analyzes fragment spectra for protein identification.
- Liquid Chromatography (LC) separates protein components.
- Software compares experimental data with theoretical spectra for protein identification.
Protein Identification Strategies
- Peptide Mass Fingerprinting (PMF) identifies proteins by analyzing the masses of their constituent peptides.
- Isotope labeling techniques enhance the selectivity and accuracy of protein quantification.
- Chemical Isotope Labeling (CIL)
- Multiplex Isotope Labeling methods, such as iTRAQ
- Various algorithms help assess and compare protein and peptide data. (e.g. MASCOT, Sequest etc.)
Key Findings from the presented information
- Identification of proteins in a sample requires a combination of protein separation techniques and mass spectrometry analysis.
- A combination of chromatographic techniques and mass spectrometry (LC-MS/MS, MS/MS) are essential approaches in sample analysis.
- Different approaches in proteomic studies exist, each with advantages and disadvantages.
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