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Questions and Answers
Pre-mRNPs that are capped, spliced, and cleaved must be _____ before they are called nuclear mRNPs.
Pre-mRNPs that are capped, spliced, and cleaved must be _____ before they are called nuclear mRNPs.
- elongated
- polyadenylated (correct)
- phosphorylated
- transcribed
The RNA recognition motif is the most common RNA-binding domain in hnRNP proteins. Another name for this motif is:
The RNA recognition motif is the most common RNA-binding domain in hnRNP proteins. Another name for this motif is:
- RNA-binding domain (correct)
- RNA motif
- KH motif
- all of the above
In an experiment you have used recombinant DNA technology to create hnRNP C protein tagged with green fluorescent protein and hnRNP A1 protein tagged with red fluorescent protein. What would you expect to see when the proteins are expressed and visualized in Xenopus cells?
In an experiment you have used recombinant DNA technology to create hnRNP C protein tagged with green fluorescent protein and hnRNP A1 protein tagged with red fluorescent protein. What would you expect to see when the proteins are expressed and visualized in Xenopus cells?
- green and red fluorescence in the nucleus (correct)
- green fluorescence only in the cytoplasm
- red fluorescence only in the cytoplasm
- red fluorescence only in the nucleus
Mutations that affect the binding of an SR protein to an exonic splicing enhancer can cause exon skipping in some genes, producing mRNAs that when translated yield nonfunctional proteins. In addition to an RNA-binding domain, SR proteins also contain an RS domain that is involved in binding:
Mutations that affect the binding of an SR protein to an exonic splicing enhancer can cause exon skipping in some genes, producing mRNAs that when translated yield nonfunctional proteins. In addition to an RNA-binding domain, SR proteins also contain an RS domain that is involved in binding:
Sequencing of small RNAs isolated from metazoan cells revealed low levels of short, capped RNAs transcribed from both the sense and antisense strands of DNA. What is the term used to describe the fact that the majority of the metazoan genome is transcribed?
Sequencing of small RNAs isolated from metazoan cells revealed low levels of short, capped RNAs transcribed from both the sense and antisense strands of DNA. What is the term used to describe the fact that the majority of the metazoan genome is transcribed?
The consensus sequence for poly(A) addition is
The consensus sequence for poly(A) addition is
Histone mRNAs lack
Histone mRNAs lack
Which process involves two transesterification reactions?
Which process involves two transesterification reactions?
Splice sites in pre-mRNA are marked by two universally conserved sequences located
Splice sites in pre-mRNA are marked by two universally conserved sequences located
Splicing joins
Splicing joins
The branch-point A residue involved in lariat formation is part of the
The branch-point A residue involved in lariat formation is part of the
Indicate the order in which the following steps occur in the production of a mature mRNA.
Indicate the order in which the following steps occur in the production of a mature mRNA.
Components of the spliceosome include
Components of the spliceosome include
This type of RNA functions in the removal of introns from pre-RNAs.
This type of RNA functions in the removal of introns from pre-RNAs.
In birds, a gene encoding a Ca -activated K channel is expressed in auditory hair cells as multiple mRNAs, which encode for proteins that open at different Ca concentrations. The Ca concentration at which the channel opens allows these cells to respond to different sound frequencies. Which one of the following would explain the appearance of the various isoforms of this particular channel?
In birds, a gene encoding a Ca -activated K channel is expressed in auditory hair cells as multiple mRNAs, which encode for proteins that open at different Ca concentrations. The Ca concentration at which the channel opens allows these cells to respond to different sound frequencies. Which one of the following would explain the appearance of the various isoforms of this particular channel?
Sex-lethal protein in Drosophila can best be described as a(n)
Sex-lethal protein in Drosophila can best be described as a(n)
Which of the following does not require enzymes?
Which of the following does not require enzymes?
RNA editing is
RNA editing is
The export of mRNAs outside the nucleus requires several proteins that are post-translationally modified by:
The export of mRNAs outside the nucleus requires several proteins that are post-translationally modified by:
Some have evolved a constitutive transport element within their genome, which allows for the export of unspliced RNAs into the cytoplasm.
Some have evolved a constitutive transport element within their genome, which allows for the export of unspliced RNAs into the cytoplasm.
Which of these events does not occur within the nucleus?
Which of these events does not occur within the nucleus?
Which type of RNA participates in nuclear export of mRNA?
Which type of RNA participates in nuclear export of mRNA?
Transport of unspliced HIV mRNA from the nucleus to the cytoplasm of host cells is promoted by a virus-encoded protein named
Transport of unspliced HIV mRNA from the nucleus to the cytoplasm of host cells is promoted by a virus-encoded protein named
The RISC complex contains which one of the following proteins?
The RISC complex contains which one of the following proteins?
Knocking out the dicer gene in mammals would lead to a loss of:
Knocking out the dicer gene in mammals would lead to a loss of:
You are using a variety of techniques to study how the RISC complex differs between siRNAs and miRNAs and have found that what distinguishes an RISC complex containing an siRNA from one containing an miRNA is that:
You are using a variety of techniques to study how the RISC complex differs between siRNAs and miRNAs and have found that what distinguishes an RISC complex containing an siRNA from one containing an miRNA is that:
The mammalian target of rapamycin (mTOR) complex 1 plays an integral role in all but one of these processes. Which one is mTOR not directly involved in?
The mammalian target of rapamycin (mTOR) complex 1 plays an integral role in all but one of these processes. Which one is mTOR not directly involved in?
The cell contains numerous organelles, all with specific functions, but the one that plays a key role in the digestion of ribosomes, mitochondria, and other organelles is the:
The cell contains numerous organelles, all with specific functions, but the one that plays a key role in the digestion of ribosomes, mitochondria, and other organelles is the:
Which of the following regarding the P-body is FALSE?
Which of the following regarding the P-body is FALSE?
Cells use several ways to avoid the translation of improperly processed mRNA molecules. ____ is(are) considered mRNA surveillance mechanisms.
Cells use several ways to avoid the translation of improperly processed mRNA molecules. ____ is(are) considered mRNA surveillance mechanisms.
MicroRNAs play a key role in which of the following?
MicroRNAs play a key role in which of the following?
Which of the following does not take part in the degradation process of eukaryotic mRNAs?
Which of the following does not take part in the degradation process of eukaryotic mRNAs?
Which of the following are NOT found within the nucleus?
Which of the following are NOT found within the nucleus?
Synthesis of pre-rRNA occurs in the
Synthesis of pre-rRNA occurs in the
The 45S pre-rRNA molecule
The 45S pre-rRNA molecule
A ribozyme is an RNA sequence
A ribozyme is an RNA sequence
Flashcards
Pre-mRNA Processing
Pre-mRNA Processing
Eukaryotic pre-mRNA is modified (capped, spliced, polyadenylated) before becoming mature mRNA.
Polyadenylation
Polyadenylation
Adding a poly(A) tail (a string of adenines) to the 3' end of mRNA.
RNA Recognition Motif (RRM)
RNA Recognition Motif (RRM)
A domain in proteins (like hnRNP) that binds to RNA.
hnRNP Proteins
hnRNP Proteins
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Exon Skipping
Exon Skipping
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SR Proteins
SR Proteins
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Pervasive Transcription
Pervasive Transcription
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Poly(A) Addition Consensus Sequence
Poly(A) Addition Consensus Sequence
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Splicing
Splicing
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RNA Editing
RNA Editing
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mRNA Export
mRNA Export
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mRNA Modifications
mRNA Modifications
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mRNA surveillance mechanism
mRNA surveillance mechanism
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Oocyte Storage
Oocyte Storage
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Nucleus Locations
Nucleus Locations
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Nucleolus
Nucleolus
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pre-rRNA Molecule
pre-rRNA Molecule
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Ribozymes
Ribozymes
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Alternative Splicing
Alternative Splicing
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RISC Complex
RISC Complex
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Dicer
Dicer
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mTOR complex
mTOR complex
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Study Notes
Post-transcriptional Gene Control
- Pre-mRNA Processing: Eukaryotic pre-mRNA is processed (capped, spliced, and polyadenylated) before becoming mature mRNA.
- Polyadenylation is crucial for nuclear mRNA.
- The correct order for these steps is initiation of transcription, addition of 5' cap, addition of poly(A) tail, splicing, and transport to cytoplasm.
- RNA Recognition Motif (RRM): hnRNP proteins commonly use this domain to bind RNA.
- hnRNP Proteins: These proteins frequently bind to RNA in the nucleus.
- Recombinant DNA Technology: Scientists can tag proteins with fluorescent proteins to observe protein locations (e.g., green fluorescent protein, red fluorescent protein) in cells.
- Exon Skipping: Mutations affecting SR protein binding to exonic splicing enhancers cause exon skipping in some genes.
- SR proteins include an RS domain involved in protein binding.
- Pervasive Transcription: The majority of the metazoan genome is transcribed.
- Poly(A) Addition: The consensus sequence for poly(A) addition is AAUAAA. The poly(A) tail is downstream of the cleavage site.
- mRNA Modifications: Histone mRNAs lack poly(A) tails, introns, and 3' UTR.
- Splicing: Splicing involves two transesterification reactions and joins two exon sequences. Splice sites are at the ends of introns.
- RNA Editing: This post-transcriptional modification alters mRNA sequences, it's an enzyme-dependent process.
- RNA editing in mammals, RNA capping, and polyadenylation occur in the nucleus.
- Nuclear Export: mRNA export from the nucleus requires proteins (e.g., proteins post-translationally modified by phosphorylation).
- Sex-lethal Protein: A splicing regulatory factor in Drosophila.
- Cytoplasmic Mechanisms:
- RISC complex contains Argonaute proteins.
- Knocking out dicer results in loss of miRNAs.
- mTOR complex participates in polypeptide chain initiation and ribosome biogenesis, but not protein degradation.
Cytoplasmic Mechanisms of Post-transcriptional Control
- Oocyte Storage: Multicellular animal oocytes store mRNAs for early development.
- These mRNAs have short poly(A) tails, preventing translation until fertilization. After fertilization, poly(A) tails lengthen supporting translation.
RNA Processing and Locations
- Nucleus: Contains locations such as Cajal bodies, histone locus bodies, and nucleoli.
- Splicing and capping are processed here, but P-bodies are located in the cytoplasm.
- Nucleolus: The site of pre-rRNA synthesis.
- mRNA Stability: The cell has surveillance mechanisms such as nonsense-mediated decay, non-stop decay, and no-go decay.
Processing of rRNA and tRNA
- Pre-rRNA Synthesis: Occurs in the nucleolus.
- pre-rRNA Molecule: The 45S pre-rRNA is encoded by tandemly arranged genes and is methylated on specific bases.
- Ribozymes: RNA sequences with catalytic ability to cleave RNA, found in spliceosomes.
Other Important Points
- Multiple mRNAs: A single gene may produce multiple mRNAs via alternative splicing, resulting in various protein isoforms.
- mRNA Surveillance Mechanisms: Mechanisms (e.g., nonsense-mediated decay) are utilized to prevent the translation of incorrectly processed mRNAs.
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