Photosynthesis: Light Reactions

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Questions and Answers

How does the absorption spectrum of chlorophyll-a relate to the portion of solar output utilized by plants?

The absorption spectrum indicates, approximately, the portion of solar output that is utilized by plants, showing the light energy absorbed as a function of wavelength.

Describe the four possible pathways that excited chlorophyll uses to dispose of its available energy.

Fluorescence (re-emit a photon), heat conversion, energy transfer to another molecule, and photochemistry (cause chemical reactions).

How do carotenoids protect photosynthetic organisms from light damage, and what role do they play in photosynthesis?

Carotenoids act as accessory pigments by transferring absorbed light energy to chlorophyll for photosynthesis and also help protect the organism from damage caused by light.

Explain the roles of the antenna complex and the reaction center complex in photosynthesis.

<p>The antenna complex collects light energy and transfers it to the reaction center complex, where the energy is used to drive chemical oxidation and reduction reactions for long-term energy storage.</p> Signup and view all the answers

Describe the two main differences between Photosystem I (PSI) and Photosystem II (PSII).

<p>PSI absorbs far-red light and produces a strong reductant, while PSII absorbs red light and produces a strong oxidant.</p> Signup and view all the answers

How are Photosystem I and Photosystem II spatially arranged within the thylakoid membrane to facilitate efficient electron transport?

<p>PSII is mainly in the grana lamellae, while PSI and ATP synthase are mainly in the stroma lamellae; the cytochrome b6f complex is evenly distributed providing a link between the two.</p> Signup and view all the answers

Briefly outline the mechanism by which excitation energy is transferred from chlorophyll to the reaction center within the antenna system.

<p>Excitation energy is transferred via fluorescence resonance energy transfer (FRET), a nonradiative process where energy passes from one molecule to another.</p> Signup and view all the answers

In the 'Z scheme', how are the electron carriers arranged and what do the large vertical arrows represent?

<p>Electron carriers are arranged vertically at their midpoint redox potentials, and large vertical arrows represent the input of light energy into the system.</p> Signup and view all the answers

Outline the four major protein complexes of the light reactions of photosynthesis, describing their functions in the thylakoid membrane.

<p>Photosystem II (oxidizes water), cytochrome b6f complex (proton motive force), Photosystem I (reduces NADP+), and ATP synthase (produces ATP).</p> Signup and view all the answers

Explain the chemiosmotic mechanism, including the roles of the proton gradient and the proton motive force.

<p>Chemiosmosis uses ion concentration and electric potential differences across membranes as energy sources. Electron flow pumps protons, creating a proton gradient/motive force, which powers ATP synthesis by ATP synthase.</p> Signup and view all the answers

Describe the three stages of the Calvin-Benson cycle.

<p>Carboxylation of the CO2 acceptor, reduction of 3-phosphoglycerate, and regeneration of the CO2 acceptor.</p> Signup and view all the answers

What dual role does CO2 play in the activity of rubisco?

<p>CO2 participates in transforming rubisco from an inactive to an active form (modulation) and acts as the substrate for the carboxylase reaction (catalysis).</p> Signup and view all the answers

Outline the process by which light controls the activity of enzymes in the Calvin-Benson cycle via the ferredoxin-thioredoxin system.

<p>Light activates the ferredoxin-thioredoxin system, which then reduces and activates target enzymes. Darkness reverses this, oxidizing thioredoxin which leads to oxidation/deactivation of target enzymes.</p> Signup and view all the answers

Explain how an increase in external temperature influences the competition between carboxylation and oxygenation in the Calvin-Benson cycle.

<p>An increase in temperature raises the rate of oxygenation more than carboxylation, and lowers CO2 concentration more than O2 concentration in solution, which leads to increased photorespiration.</p> Signup and view all the answers

Describe how the C4 cycle minimizes the oxygenase activity of rubisco and the concurrent loss of carbon through the photorespiratory cycle.

<p>The C4 cycle concentrates CO2 in bundle sheath cells where rubisco is active, suppressing ribulose 1,5-bisphosphate oxygenation and photorespiration.</p> Signup and view all the answers

Outline the five successive stages of the transport of CO2 from the external atmosphere to the bundle sheath cells in c4 plants.

<p>Fixation of HCO3- by PEPCase in mesophyll cells, transport of 4-carbon acids to bundle sheath, decarboxylation of 4-carbon acids to generate CO2, transport of the 3-carbon backbone back to mesophyll cells and regeneration of HCO3- acceptor.</p> Signup and view all the answers

Describe how CAM plants temporally separate the initial capture of atmospheric CO2 and the final incorporation of CO2 into carbon skeletons.

<p>CAM plants fix atmospheric CO2 into C4 acids at night, storing them in vacuoles. During the day, these acids are decarboxylated, releasing CO2 for use in the Calvin-Benson cycle.</p> Signup and view all the answers

Explain how the water-conserving closure of stomata in CAM plants during the day contributes to the building of carbohydrates.

<p>Closure prevents water loss and retains internally generated CO2 which is then fixed by Calvin-Benson.</p> Signup and view all the answers

Describe the allocation of photosynthates (specifically sucrose and starch) in eukaryotic organisms, differentiating between their roles during the day and night.

<p>Sucrose exported from source leaves to sink tissues flows continuously during the day, while starch is retained in chloroplasts. At night, starch is converted to sucrose for export.</p> Signup and view all the answers

Explain how the anatomy of a leaf maximizes light absorption, with a focus on palisade and spongy mesophyll cells.

<p>Palisade cells are tightly packed with high surface-to-volume ratios to maximize photosynthetic structures, while spongy mesophyll cells have irregular shapes and large air spaces to reflect/refract light, increasing interfaces for light capture.</p> Signup and view all the answers

Contrast diaheliotropic and paraheliotropic leaf movements in solar-tracking plants.

<p>Diaheliotropic solar tracking maximizes light interception, while paraheliotropic movement avoids full sunlight exposure to minimize water and heat loss.</p> Signup and view all the answers

Distinguish between acclimation and adaptation in plants regarding sun and shade environments, and what happens when adapted plants are placed in the wrong environment.

<p>Acclimation is when new leaves develop suited to the new environment while adaptation is permanent. Adapted shade plants in full sun suffer photoinhibition and bleaching.</p> Signup and view all the answers

Explain the term 'light compensation point' of a plant, and how it differs between sun and shade plants.

<p>Light compensation point is where photosynthetic CO2 uptake balances respiratoty CO2 release. It is higher in sun plants than shade plants.</p> Signup and view all the answers

When leaves are exposed to excess light, what mechanisms are used to dissipate the surplus absorbed light energy?

<p>Heat production and xanthophylls cycle is used if exposed to excess light.</p> Signup and view all the answers

Describe how sensible heat loss and evaporative heat loss regulate leaf temperature and the significance of the Bowen ratio in this process.

<p>Sensible heat loss transfers heat from leaf to air, evaporative heat loss cools it via transpiration; Bowen ratio is the ratio of these fluxes. partial stomatal can cause less evaporate cooling and raise the Bowen ratio.</p> Signup and view all the answers

Flashcards

What is Photosynthesis?

The only biologically important process that can capture energy from the sun.

What are Photoystems?

Functional units within chloroplasts where light energy is converted to chemical energy.

What is Absorption Spectrum?

Indicates the amount of light energy absorbed by a molecule or substance at different wavelengths.

What is Photochemistry?

The process where energy of an excited state causes chemical reactions.

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What are Phycobilisomes?

Light-harvesting antennae for photosystem II in cyanobacteria and red algae.

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What is the Antenna Complex?

The collection of pigments that gather light and transfer energy to the reaction center.

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What is the Reaction Center Complex?

The complex where chemical oxidation and reduction reactions lead to energy storage.

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What are Photosystems I and II?

Two photochemical complexes operating in series for early energy storage during photosynthesis.

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What are Thylakoids?

Internal membranes within the chloroplast that are the site of light reactions.

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What is the Stroma?

Region of the chloroplast outside the thylakoids, where carbon reduction reactions take place.

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What are Integral Membrane Proteins?

Proteins essential to photosynthesis embedded in the thylakoid membranes.

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What is Fluorescence Resonance Energy Transfer (FRET)?

Transfer of excitation energy from one molecule to another by a nonradiative process.

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What is the Z Scheme?

A series of electron carriers in O2-evolving photosynthetic organisms.

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What is the Cytochrome b6f Complex?

Complex that oxidizes plastohydroquinone and delivers electrons to PSI.

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What is Plastocyanin (PC)?

Small, water-soluble protein that transfers electrons between b6f complex and P700.

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What is Ferredoxin(Fd)?

Small, water-soluble iron-sulfur protein that accepts electrons from PSI reaction center.

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What is photophosphorylation?

Light-dependent ATP synthesis.

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What is Chemiosmotic Mechanism?

Mechanism where ion concentration differences across membranes drive cellular processes.

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What is Proton Motive Force?

Sum of a proton chemical potential and a transmembrane electric potential.

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What is ATP Synthase?

Enzyme complex that synthesizes ATP.

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What is the Calvin-Benson Cycle?

Cycle that incorporates atmospheric CO2 into organic compounds.

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What is Photorespiration?

Process where rubisco catalyzes oxygenation of ribulose 1,5-bisphosphate.

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What is the C4 Cycle?

Cycle that minimizes oxygenase activity of rubisco.

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What is Crassulacean Acid Metabolism (CAM)?

Variant of photosynthetic carbon fixation in arid environments.

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What is the Light Compensation Point?

Point where photosynthetic CO2 uptake balances respiratory CO2 release.

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Study Notes

Light Reactions of Photosynthesis

  • Life on Earth depends on solar energy, which is harvested through photosynthesis
  • Photosynthesis is the only biologically important process capable of capturing energy
  • A large portion of the planets energy resources come from photosynthetic activity in ancient and recent times, such as fossil fuels
  • Photosynthesis literally means "synthesis using light"
  • Photosynthetic organisms synthesize complex carbon compounds using solar energy
  • In higher plants, the mesophyll of the leaves contain the most active photosynthetic tissue
  • Mesophyll cells are host to multiple chloroplasts
  • Light energy is converted into chemical energy via two functional units known as photosystems, which are located in the chloroplasts.
  • Absorbed light energy is used to transfer electrons through a series of electron donors and acceptors
  • Electrons reduce NADP+ to NADPH and oxidize H2O to O2
  • Light energy is used to generate a proton motive force (PMF) across the thylakoid membrane, which synthesizes ATP

General Concept of Photosynthesis

  • Light has both particle and wave characteristics

Light Has Both Particle and Wave Characteristics

  • Light has properties of both particles and waves
  • Waves are characterized by wavelength
  • A light wave is a transverse electromagnetic wave where electric and magnetic fields oscillate perpendicularly
  • Sunlight is composed of photons of different frequencies
  • Human eyes are only sensitive to a small range of frequencies within the visible-light region of the electromagnetic spectrum
  • The absorption spectrum of chlorophyll-a shows what solar output is used by plants
  • Absorption spectra provide the amount of light energy taken up by a molecule as a function of the wavelength of light
  • Chlorophyll appears green because it absorbs light mainly in the red and blue parts of the spectrum
  • Chlorophyll absorbs a photon in its ground state and transitions to an excited state
  • Blue light excites chlorophyll to a higher energy state than red light, because photons have higher energy when wavelengths are shorter
  • Chlorophyll is unstable in the higher excited state
  • Chlorophyll rapidly dissipates energy as heat and enters the lowest excited state, where it can be stable for nanoseconds
  • Energy capture must be rapid due to excited state instability

Available Energy Disposal

  • Four alternative pathways exist for disposing of available energy in the lowest excited state of chlorophyll:
  • Excited chlorophyll re-emits a photon and returns to its ground state, known as fluorescence
  • Excited chlorophyll returns to its ground state by directly converting excitation energy into heat, without emission
  • Excited chlorophyll participates in energy transfer, transferring its energy to another molecule
  • Photochemistry occurs when energy from the excited state causes chemical reactions
  • The photochemical reactions occurring during photosynthesis are among the fastest known chemical reactions
  • Extreme speed enables photochemistry to compete with the three other possible excited state reactions

Photosynthetic Pigments Absorb the Light That Powers Photosynthesis

  • Sunlight energy is first absorbed by plant pigments located in the chloroplast
  • Chlorophylls and bacteriochlorophylls represent the typical pigments in photosynthetic organisms
  • Chlorophylls a and b are found in green plants
  • Chlorophylls c and d are found in some protists/cyanobacteria
  • All chlorophylls have a complex ring structure chemically related to porphyrin groups in hemoglobin/cytochromes
  • Carotenoids are linear molecules with multiple conjugated double bonds
  • Absorption bands in the 400-500 nm region give carotenoids an orange color and are present in all photosynthetic organisms
  • Carotenoids transfer light energy to chlorophyll for photosynthesis and are known as accessory pigments
  • Carotenoids help protect from light damage
  • Phycobilisomes are the primary light harvesting antennae for photosystem II in cyanobacteria and red algae
  • Supramolecular complexes are composed of water-soluble phycobiliproteins with covalently attached tetrapyrroles, known as phycobilins
  • Absorbed light energy is transferred by a rapid, radiation-less downhill energy transfer
  • Energy goes from phycoerythrin/phycoerythrocyanin to C-phycocyanin, and then to allophycocyanin species, acting as final energy transmitters/reaction centers
  • Action spectrums show the magnitude of a biological systems response to light as a function of wavelength
  • Action spectrums for photosynthesis can be constructed from measurements of oxygen evolution at different wavelengths

Light-Harvesting Antennas and Photochemical Reaction Centers

  • Light absorption results as a cooperation between chlorophyll and carotenoid molecules
  • Most pigments serve as an antenna complex
  • Antenna complexes collect light and transfer energy to reaction centre complexes
  • Chemical oxidation and reduction reactions occur in reaction center complexes and leads to long-term energy storage
  • A single chlorophyll molecule absorbs few photons each second
  • The system is kept active when a reaction center receives energy from many pigments at once
  • Several hundred pigments are associated with each reaction center
  • Each reaction center must operate four times to produce one molecule of oxygen - hence 2500 chlorophylls per O2.
  • Reaction centers and most antenna complexes are integral components of the photosynthetic membrane
  • These membranes are found within the chloroplast in eukaryotic photosynthetic organisms
  • In photosynthetic prokaryotes, the site of photosynthesis is the plasma membrane or its derivatives

Oxygen-Evolving Organisms Have Two Photosystems

  • The quantum yield of photochemistry is 1.0.
  • ~10 photons are required to produce each O2 molecule; therefore, the overall max quantum yield of O2 production is 0.1
  • Any photon absorbed by chlorophyll or other pigments drives photosynthesis equally
  • Yield drops dramatically in the far-red region of chlorophyll absorption (>680nm)
  • Emerson discovered the enhancement effect
  • In 1960, it was discovered that two photochemical complexes, photosystem I and II (PSI and PSII) which operate in series to carry out early energy storage reactions of photosynthesis
  • Photosystem I absorbs Far-red light.
  • Photosystem II absorbs red light
  • Photosystem I produces a strong reductant (reducing NADP+) and a weak oxidant.
  • Photosystem II produces a strong oxidant (oxidizing water) and a weaker reductant than photosystem I

Organization of Photosynthetic Apparatus

  • The chloroplast is the site of photosynthesis
  • Photosynthesis takes place in the subcellular organelle (chloroplast) in photosynthetic eukaryotes
  • The chloroplast contains internal membranes known as thylakoids, which are the site of light reactions
  • Carbon reduction reactions are catalyzed by water-soluble enzymes and take place in the stroma, which can be found in the chloroplast
  • Thylakoid membranes closely associated with each other are known as grana lamellae
  • Exposed membranes lacking stacking are known as stroma lamellae
  • Envelopes surround chloroplasts and consist of two separate lipid bilayer membranes
  • Chloroplasts contain DNA, RNA, and ribosomes

Thylakoids Contain Integral Membrane Proteins

  • Proteins essential to photosynthesis are embedded in thylakoid membranes
  • Reaction centers, antenna pigment-protein complexes, and most electron carrier proteins are integral membrane proteins
  • Thylakoid membrane proteins oriented toward the stromal side of membrane, and toward the interior space of thylakoid (lumen)
  • Chlorophylls and accessory light-gathering pigments always form pigment-protein complexes
  • Antenna and reaction center chlorophylls are organized to optimize energy transfer in antenna complexes and electron transfer in reaction centers

Spatially Separated Photosystem I and II in the Thylakoid Membrane

  • PSII, antenna chlorophylls, and associated electron transport proteins are located predominantly in the grana lamellae.
  • PSI reaction center, antenna pigments, electron transfer proteins, and ATP synthase (catalyzes ATP formation) are found in the stroma lamellae and at the grana lamellae edges
  • Cytochrome b6f complex, which connects the two photosystems, is evenly distributed between stroma and granum lamellae
  • Two photochemical events in O2-evolving photosynthesis are spatially separated
  • Separation implies one or more electron carriers diffuses from the grana region to the stroma region where electrons are delivered to photosystem I
  • PSII to PSI ratio is about 1.5:1, which can change based on light conditions

Organization of Light-Absorbing Antenna Systems

  • Different classes of photosynthetic organisms have remarkably varied antenna systems
  • Reaction centers are similar even in distantly related organisms
  • The variety of antenna complexes reflects evolutionary adaptation to different environments

Antenna Systems Contain Chlorophyll and are Membrane Associated

  • Antenna System varies in size by organism
  • Higher plants contain 200-300 chlorophylls per reaction center
  • Algae and bacteria contain thousands of pigments per reaction center
  • Antenna pigments are associated with proteins to form pigment-protein complexes
  • Excitation energy moves from chlorophyll which absorbs light to the reaction center via fluorescence resonance energy transfer (FRET)
  • Energy is transferred from one molecule to another by a nonradiative process
  • Antenna pigments transfer 95-99% of photons absorbed, toward the reaction center where it can be used for photochemistry
  • Energy transfer among antenna pigments are physical
  • Electron transfer involves chemical (redox) reactions

Antenna Funnels Energy to Reaction Center

  • Pigment sequence in antennae that funnel absorbed energy towards the reaction center have absorption maxima that are progressively shifted toward longer red wavelengths
  • The energy of the excited state is lower nearer the reaction center
  • Eukaryotic photosynthetic organisms containing chlorophyll a and b, have most abundant antenna proteins belonging to a large family of structurally related proteins
  • Those associated with photosystem II are called light-harvesting complex II (LHCII) proteins
  • Those associated with photosystem I are called LHCI proteins, also known as chlorophyll a/b antenna proteins.
  • All have significant sequence similarity

Mechanisms of Electron Transport

  • Electrons From Chlorophyll Travel Through The Carriers Organized In The "Z Scheme"
  • Electron carriers function in electron flow from H2O to NADP+
  • Components known to react with each other are connected by arrows, the Z scheme is a synthesis of kinetic and thermodynamic information
  • Vertical arrows represent the input of light energy into the system
  • Photons excite specialized chlorophyll of the reaction centers (P680 (PSII) and P700 (PSI) and an electron is ejected
  • The electron passes carriers and reduces P700 (electrons from PSII) or NADP+ (electrons from PSI)
  • Light reactions use 4 major protein complexes: photosystem II, the cytochrome b6f complex, photosystem I, and the ATP synthase
  • These 4 integral membrane complexes are vectorially oriented in the thylakoid membrane
  • Photosystem II oxidizes water to O2 in the thylakoid lumen, which releases photons to the lumen
  • Cytochrome b6f oxidizes plastohidroquinone (PQH2) molecules (reduced by PSII) and delivers electrons to PSI.
  • Oxidation of plastohidroquinone is coupled to proton transfer into the lumen from the stroma, which generates a proton motive force
  • Photosystem I reduces NADP+ to NADPH in the stroma via ferredoxin (Fd) and the flavoprotein ferredoxin-NADP reductase (FNR)
  • ATP synthase produces ATP as protons diffuse back through it from the lumen into the stroma

The Photosystem II

  • PSI and PSII have distinct absorption characteristics
  • The reaction center chlorophyll of photosystem I absorbs maximally at 700 nm (P700).
  • The analogous optical transient of photosystem II is at 680 nm (P680)
  • Photosystem II exists in a multisubunit protein supercomplex
  • D1/D2 membrane proteins found in the reaction center core
  • Additional chlorophylls, carotenoids, phaeophytins, and plastoquinones are bound to D1 and D2 membrane proteins
  • Water is oxidized to oxygen by photosystem II
  • Water molecules have four electrons removed, generating an O2 molecule and four hydrogen ions
  • Protons are released to the thylakoid lumen and transferred to the stroma via ATP synthase
  • Protons released during water oxidation contribute to electrochemical potential driving ATP formation
  • Manganese (Mn) is an essential cofactor in the water-oxidizing process
  • Oxidation of Mn ions/S states oxidation is linked to H2O oxidation and O2 generation
  • Phaeophytin and two quinones accept electrons, in the electron acceptor complex, in photosystem II

Cytochrome b6f Complex

  • Cytochrome b6f complex is a large multisubunit protein with several prosthetic groups
  • It is equally distributed between grana and stroma regions of the membranes
  • Precise mechanisms aren't fully understood
  • The Q cycle accounts for most observations
  • In this mechanism, plastohydroquinone (PQH2) is oxidized.
  • One electron is passed along a linear electron transport chain towards photosystem I
  • The other electron goes through a cyclic process that increases the number of protons pumped across the membrane
  • In the linear transport chain, the oxidized Rieske protein (FeSR) accepts an electron from PQH2 and transfers it to cytochrome f
  • Cytochrome f then transfers an electron to plastocyanin (PC), which in turn reduces oxidized P700 of PSI
  • Plastocyanin (PC) is a small water soluble copper containing protein that transfers electrons between the cytochrome b6f complex and P700

Photosystem 1 Reaction Center Reduces NADP+

  • PSI reaction center complex is a large multisubunit complex
  • A core antenna of 100 chlorophylls are integral to the PSI reaction center
  • The core antenna and P700 are bound to PsaA and PsaB proteins
  • Electrons from PSI reaction center are transferred to ferredoxin (Fd)
  • Fd is a small water-soluble iron-sulfur protein
  • Membrane-associated flavoprotein ferredoxin-NADP-reductase (FNR) reduces NADP+ to NADPH
  • Accomplishes noncyclic electron transport which begins wih oxidation of water
  • Some cytochrome b6f complexes are found in the stroma region of the membrane, where photosystem I is located
  • Under certain conditions, cyclic electron flow proceeds from the reducing side of photosystem I via plastohydroquinone and the b6f complex and back to P700
  • Cyclic electron flow is coupled to proton pumping into the lumen, which is used for ATP synthesis but does not oxidize water or reduce NADP+

Proton Transport and ATP Synthesis in the Chloroplast

  • Some captured light energy is used for light-dependent ATP synthesis (photophosphorylation)
  • Photophosphorylation works via the chemiosmotic mechanism:
  • Proposed by Peter Mitchell in the 1960s
  • Chemiosmosis is a unifying aspect of membrane processes in life
  • Ion concentration and electric-potential differences across membranes are free energy sources that can be utilized by the cell
  • Electron flow is accompanied with proton flow from one side of the membrane to the other
  • Direction of proton translocation is such that the stroma becomes more alkaline (fewer H+ ions) and the lumen becomes more acidic (more H+ ions) due to electron transport
  • Mitchell proposed that the total energy available for ATP synthesis, is the proton motive force
  • Proton motive forces are the sum of a proton chemical potential and a transmembrane electric potential
  • A Transmembrane of one pH unit is equivalent to a membrane potential of 59 mV.
  • ATP is synthesized by the enzyme complex known as ATP synthase, ATPase, and CF0-CF1
  • This enzyme consists of two parts:
  • A hydrophobic membrane-bound portion called CF0
  • A portion that sticks out into the stroma called CF1
  • The internal stalk and probable much of the CF0 of the enzyme rotate during catalysis
  • The enzyme is actually a tiny molecular motor
  • The stoichiometry of protons translocated to ATP formed is 14/3, or 4.67
  • Three molecules of ATP are synthesized for each rotation of the enzyme

Carbon Reactions of the Photosynthesis Process

  • Solar radiant energy (ca. 3 x 1021 Joules/year) is converted via endergonic reactions in plants into carbohydrates (ca. 2 x 1011 tonnes of carbon/year)
  • Transforming sunlight energy into various forms of chemical energy is one of the oldest biochemical reactions on Earth
  • A billion years ago, heterotrophic cells used primary endosymbiosis with a cyanobacterium to convert sunlight into chemical energy
  • Original endosymbiosis has diversified into an enormous variety of organelles
  • The transition from endosymbiont to organelle loses unnecessary functions in host cell and gains metabolic pathways
  • Chloroplasts are where both light and carbon reactions of photosynthesis occur
  • ATP and NADPH from light reactions are moved from thylakoid membranes to fluid phase (stroma)
  • Then they drive reduction of atmospheric CO2 to carbohydrates and cell components via enzyme-catalyzed reduction of atmospheric CO2
  • Those stroma-localized reactions depend on products of photochemical processes and also are regulated directly by light
  • So they are referred to as carbon reactions of photosynthesis

The Calvin-Benson Cycle

  • Atmospheric CO2 is incorporated into organic compounds appropriate for life via the Calvin-Benson cycle, which produces starch and sucrose.
  • Two Major products are the reserve polysaccharide starch (accumulated transiently in chloroplasts), and sucrose (exported from leaves to other areas)
  • The Calvin-Benson cycle is found in many prokaryotes and in all photosynthetic eukaryotes
  • The cycle can be named reductive pentose phosphate cycle

Three Stages of Calvin-Benson Cycle

  • In the 1950s, M. Calvin, A. Benson, and their colleagues investigated the Calvin-Benson cycle
  • It proceeds in three stages:
  • Carboxylation: of the CO2 acceptor molecule. The committed enzymatic step occurs to generate two molecules of a 3-carbon intermediate (3-phosphoglycerate).
  • Reduction: of 3-phosphoglycerate.
  • Regeneration: of the CO2 acceptor ribulose 1,5-bisphosphate.
  • In the first step, three molecules of CO2 and three molecules of H2O react with three molecules of ribulose 1,5-bisphosphate, resulting in six molecules of 3-phosphoglycerate
  • This reaction is catalyzed by the chloroplast enzyme ribulose-1,5-bisphosphate carboxylase/oxygenase, (rubisco)
  • The reduction stage of the Calvin-Benson cycle reduces the carbon of 3-phosphoglycerate coming from the carboxylation stage.
  • Continuous atmospheric CO2 uptake requires constant regeneration of the CO2 acceptor ribulose 1,5-bisphosphate to prevent depletion of Calvin-Benson cycle intermediates 3CO2 + 3 ribulose 1,5-bisphosphate + 3H2O + 6NADPH + 6H+ +6ATP ---> 6 triose phosphates + 6NADP+ + 6ADP +6Pi
  • Triose phosphates are formed in the carboxylation / reduction phases of the Calvin-Benson cycle.
  • They expense energy (ATP) and store reducing equivalents (NADPH)
  • Generated in thylakoid membranes of chloroplasts:
  • Five triose phosphates are used in the regeneration phase that restores ribulose 1,5-bisphosphate, the CO2 acceptor.
  • The sixth triose phosphate represents net synthesis from CO2
  • It is a building block for other metabolic processes 5 triose phosphates + 3ATP ---> 3 ribulose 1,5-bisphosphate + 3ADP

Regulation of Calvin-Benson Cycle

  • The ratio of ATP:NADPH required - 3:2
  • The efficient use of energy in the Calvin-Benson cycle requires specific regulatory mechanisms
  • The mechanisms ensure all intermediates in cycle are present at adequate concentrations in light and that the cycle is turned off in the dark
  • Rubisco plays a critical role in the carbon cycle
  • The catalytic rate is slow (1-12 CO2 fixations per second)
  • Rubisco must be activated before acting as a catalyst
  • CO2 molecule has a dual role
  • Participates in the transformation of the enzyme from inactive to active form (modulation)
  • Serves as the substrate for the carboxylase reaction (catalysis)
  • Light controls the activity of four other enzymes of the Calvin-Benson cycle via the ferredoxin-thioredoxin system
  • The system consists of ferredoxin, ferredoxin-thioredoxin reductase, and thioredoxin.
  • Deactivation in dark occurs by reversing the reduction (activation) pathway
  • Oxygen/reactive oxygen species transform reduced thioredoxin (-SH HS-) to oxidized state (-S-S-)
  • Oxidized state converts the reduced target enzyme to the oxidized state and catalytic activity is lost
  • Illumination couples the flow of protons from stroma into the thylakoid lumen with the release of Mg2+ from the intrathylakoid space to the stroma
  • These decrease stromal concentration of H+ (pH increases from 7 to 8) and increase Mg2+ by 2-5mM
  • Several Calvin-Benson cycle enzymes using Mg2+ for catalysis, are more active at pH 8 than pH 7 including rubisco, fructose-1,6-bisphosphatase, sedoheptulose-1,7-bisphosphatase, and phosphoribulokinase
  • The light-mediated increase of Mg2+ and H+ enhances activity of key enzymes of the Calvin-Benson cycle

Rubisco

  • Rubisco can catalyze both the carboxylation and oxygenation of ribulose 1,5-bisphosphate
  • Carboxylation yields two molecules of 3-phosphoglycerate
  • Oxygenation produces one molecule each of 3-phosphoglycerate and 2-phosphoglycolate
  • Oxygenation initiates a coordinated network of enzymatic reactions compartmentalized in chloroplasts, leaf peroxisomes, and mitochondria.
  • This process (photorespiration) causes the partial loss of CO2 fixed by the Calvin-Benson cycle
  • Elevated levels of CO2 can create an increase in yield when grown in greenhouse.

Competing Reactions - Carboxylation and Oxygenation

  • Being able to catalyze the oxygenation of ribulose 1,5-bisphosphate is a property of all rubiscos
  • By specific chloroplast phosphatase, 2-phosphoglycolate formed in the chloroplast by oxygenation of ribulose 1,5-bisphosphate is rapidly hydrolyzed to glycolate
  • Glycolate exits the chloroplast (specific transporter protein), diffuses to peroxisome
  • Cooperations include the peroxisomes and mitochondria.
  • Oxidation of glycolate is catalyzed by glycolate oxidase, producing H2O2/glyoxylate.
  • Catalase breaks down the H2O2, releasing O2, while glyoxylate undergoes transamination with glutamate - Glycine.
  • Glycine exits peroxisome and enters the mitochondrion
  • Glycines converted to serine and CO2
  • Serine diffuses to peroxisome, converted to glycerate
  • Chloroplast re-entry. This is phosphorilated to yield 3-phosphoglycerate
  • Factors determining C2 and Calvin-Benson balance:
  • Inherent to the plant (kinetic properties of rubisco)
  • Linked to the environment (temperature and the concentration of substrates, CO2 and O2).
  • External Temperature Increase
  • Modifies kinetic constants of rubisco, increasing rate of oxygenation more than rate of carboxylation
  • Lowers concentrations of CO2, more than of O2 in solution, equilibrium with water. The increase in photorespiration limits efficiency of photosynthetic carbon assimilation under warm temperatures
  • A progressive increase in temperature tilts the balance away from the Calvin-Benson cycle and toward the C2 oxidative photosynthetic cycle

Carbon Concentrating Mechanisms

  • Reduction in CO2, and a rise in O2 triggered a series of adaptions to handle a certain environment - Promoted photorespiration in photosynthetic organisms, Adaptions include strategies for active uptake of CO2, from environment
  • Accumulation of inorganic carbon near rubisco.

C4 Cycle

  • C4 photosynthesis minimizes rubisco's oxygenase activity/carbon loss through the photorespiratory cycle
  • It's a carbon-concentrating mechanism that land plants use to compensate for limitations related to the low atmospheric CO2
  • The C4 photosynthetic carbon cycle (also known as the Hatch-Slack cycle/ C4 cycle) was elucidated by M.D. Hatch and C.R. Slack
  • They found that malate and aspartate are the first stable detectable intermediates of photosynthesis in sugarcane leaves
  • The metabolic pathway takes place in two morphologically distinct cell types (mesophyll and bundle sheath cells)
  • The enzyme phosphoenolpyruvate carboxylase (PEPCase) catalyzes the primary carboxylation rather than rubisco
  • A 4-carbon acid flows across the diffusion barrier to the vascular region, is decarboxylated, then CO2 is refixed by rubisco via the Calvin-Benson cycle

Plant Cells in C4 Cycle

  • C4 cycle exists in leaves of plants whose vascular tissues are surrounded by two distinctive photosynthetic cell types
  • Internal ring of bundle sheath cells wrapped with an outer ring of mesophyll cells.
  • Chloroplasts in bundle sheath cells have large starch granules/unstacked thylakoid membranes in concentric arrangement
  • Mesophyll cells contain randomly arranged chloroplasts with stacked thylakoids

Five Successive Stages of C4 Cycle (in anatomical context):

  • HCO3- fixed by PEPCase in mesophyll cells
  • 4-Carbon acids (malate, aspartate ) are transported to bundle sheath cells
  • Of the 4-carbon acids undergo decarboxylation generating CO2
  • This is reduced to carbohydrate via the Calvin-Benson cycle
  • 3-carbon backbone (pyruvate /alanine) is transported back to the mesophyll cells
  • And regenerating the HCO3- acceptor

Enzyme Compartmentalization & Carbon Fixation

  • An inorganic carbon source is taken up by mesophyll cells
  • The cycle ensures the Calvin-Benson cycle /bundle sheath of cells can be further fixed.
  • Fixed and exported to pholem cells
  • Requires operation in C4 cycle:
  • Cooperation of the chlorophyll - containing cell types
  • Concentration of CO2 results in suppression of ribulose 1,5 of biophosphate activity
  • Chloroplast proteomes exhibit qualitatively and quantitatively similar proteomes in envelope, in both C3 and C4 plants
  • translocators are abundant in the envelopes of C4 plants, more than in C3 plants
  • abundance ensures fluxes of metabolic intermediates across the chloroplast envelope (C4 plants > C3 plants)
  • Reduced water loss and photorespiration with C4 cycle
  • Elevated temperature does affect photosynethic CO2 asssimilation in C3 plants b/c
  • Solubility of CO2 decreases.
  • Carboxylative campacity of rubricso, C4 plants feature overcome its effects:
  • High affinity of PEPCase, for rubiscos substrate
  • Saturated enzyme at reduced CO2 levels
  • Oxygenace activity - Suppressed ( doesn't compete with original carboxylation)
  • Allows high activity for tomato plants to reduce the tomato aperture at high temperatures and fix 2 at higher rates.

CAM: Crassulacean acid metabolism

  • Variant of photosynthetic carbon fixation that concentrate CO2 at the site of rubisco named CAM (historically named crassulacean acid)
  • Observed in succulent member of the Crassulaceae (Bryophyllum calycinum)
  • Attain high biomass in habitats where precipitation is inadequate, evaporation great
  • This metabolism is associated with anatomical features that reduce water loss:
  • Thick cuticles
  • Volume ratios -Large Veicues -Stomata with small apertures.
  • Improves CAM performance (restricts CO2 during day)

CAM Plants

  • CAM spatially close, temporally out of phase, compared to atmosphere capture C4acids + final incorporation + into C skeletons
  • By nearly 12 hours (24hr light dark cycle)
  • Night time fixes atmospherically
  • Respiratory CO2 into oxaloacetate - forms via glycolytic breakdown stored carbohydrates
  • Cytosolic NAD malate dehydrogenase converts converts oxaloacetate to malate
  • Malate stored and transported to chloroplast
  • Day: Stored malate decarboxylated, released CO2 available - Chloroplast for procession via Calvin Benson Cycle
  • This and complementary 3 carbon, are converted to triose phosphates and to starch or sucrose in C plants
  • Rate - Carbon change creates 24hr CAM cycle divide into four phases night time early morning / day afternoon.

Four Phases of CAM

  • Phase1- Nocturnal - Stomata open - Leaves respiring Captured CO2 - stired ass malate vacuole
  • Phase2 :PEPCcase dominate
  • Phase3- Diurnal , Stomata close, leaves photosynthesizing
  • Stired malate is decarboxylated
  • Phase 4
  • Rubisco/ advective Photorespiration is alleviated - Transient shifts, prepare 1/3 respectively

Rubisco Activity

  • Increases Phase 2- decreases phase 4

PEPCcase

  • increases phase 4 - decrease phase 2 versatility- Sensitve Stimulient
  • Can open stormata. Close- minimize water with -

CO2 in CAM

  • Because stormata closes the transfer from M not escapes and coverts carbo - Calvin Cycle
  • Storma helps concern +

Partioning Starch/Sucrose

Eukaryotes

  • assimilation from absorbed / site synt
  • YIELDS sucrose/starch
  • CYTOSOL AND CHLORO physically CYTS: Suc flows / heterotrophic - Duresnch gr - Suc source sink Source: sink sugar-
  • darkness- stops As- Starts Degradtion of clhoro-Falls dra - Converted, LOW levels
  • HIGH- Plant growth storage.

Limiting Factors in Photosynthesis

  • Factors: direct environmental and indirect response
  • Rate of photosynthesis at that time
  • Function - leaves.
  • Result from Photosyn
  • Light is flux energy.
  • Energy- Ratio light: less 5% ->

Maximizing Light Absortion

  • TRANSParet visible light.
  • Top -> Columar cells

Light Absortion With Leaf

  • Angle move -> Control
  • Tend /fulls Sun -> STEEP angles
  • Angle LEAVES -> Horizontal
  • Plants- contol solar
  • Remains perpum - Rays

Acclimation Adaptations

  • Growth process leaf -> Suit to environment
  • Matuared -> abscissed
  • Better
  • Either shade light

Conditions Transfering

  • Shadet: Die Shade leaves
  • Centers Chlorply
  • Thinner than Shade
  • Shade -> 31 PHOTOS
  • 21 SUN
  • Enhance/better /energy shade

light /intact

  • Mito/ Resp ->
  • Light -> CO2 photo
  • LIGHT COMPENSATE
  • Point sun 102-m
  • Linear photon
  • 15 -

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