Origin of the Atmosphere - Physical Geography
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Questions and Answers

What does the discovery of the first RNA enzyme suggest about early life forms?

  • They had complex cellular structures.
  • They may have used RNA to catalyze the production of more RNA. (correct)
  • They relied primarily on proteins for replication.
  • They exclusively utilized DNA for genetic information.

What hypothesis suggests that RNA could have been the first genetic material?

  • Nucleotide synthesis hypothesis
  • DNA replication hypothesis
  • Protein world hypothesis
  • RNA world hypothesis (correct)

Which of the following is a limitation of RNA compared to DNA?

  • RNA can replicate without enzymes.
  • RNA can store information better than DNA.
  • RNA is less stable than DNA. (correct)
  • RNA is more versatile than DNA.

Why is it challenging to assemble nucleotides in the context of the RNA theory?

<p>Specialized enzymes are necessary for joining components. (C)</p> Signup and view all the answers

In the context of the RNA world hypothesis, which base pairs are common to both RNA and DNA?

<p>A/U and G/C (B)</p> Signup and view all the answers

What is one reason RNA is described as a molecular jack-of-all-trades?

<p>RNA can be both a genetic material and a catalyst. (C)</p> Signup and view all the answers

What possible scenario does the RNA world hypothesis suggest regarding early genetic material?

<p>Early genes could have been produced abiotically from RNA. (A)</p> Signup and view all the answers

What did the Miller-Urey experiment demonstrate in relation to RNA?

<p>It showed that adenine could form under prebiotic conditions. (B)</p> Signup and view all the answers

What prerequisite molecular world is suggested to have preceded the RNA world?

<p>TNA world (A)</p> Signup and view all the answers

What components are found in each nucleotide?

<p>Sugar, base, and phosphate group (A)</p> Signup and view all the answers

What did Prof. John Sutherland's 2009 research reveal about nucleotide assembly?

<p>Simple molecules can assemble into a nucleotide without forming sugars or bases. (D)</p> Signup and view all the answers

What remains unresolved regarding RNA in the context of origin of life studies?

<p>The issue of an RNA replicator (A)</p> Signup and view all the answers

What is the approximate age of the oldest microfossils of cells?

<p>3.5 billion years (B)</p> Signup and view all the answers

Which of the following distinguishes prokaryotes from eukaryotes?

<p>Prokaryotes are typically unicellular organisms. (D)</p> Signup and view all the answers

In the six-kingdom system of classification, which of the following is NOT a recognized kingdom?

<p>Protokaryota (B)</p> Signup and view all the answers

What molecular component is noted as potentially offering new insights into the chemistry of life?

<p>Hydrogen cyanide (HCN) (D)</p> Signup and view all the answers

What hypothesis did Alexandr Ivanovich Oparin propose regarding the origin of life?

<p>Different types of coacervates formed in the Earth's primordial ocean. (C)</p> Signup and view all the answers

What differentiates the nuclear geyser model from other theories of organic molecule origin?

<p>It suggests a terrestrial origin of the first organic molecules. (A)</p> Signup and view all the answers

Which discovery supports the idea of extraterrestrial origins for organic molecules?

<p>The Murchison meteorite analysis. (A)</p> Signup and view all the answers

What role do tiny dust particles from space play in theories of life's origins?

<p>They contribute organic material to Earth's surface. (A)</p> Signup and view all the answers

Which experiment is mentioned in connection with the presence of organic compounds in the Murchison meteorite?

<p>The Miller-Urey experiment. (D)</p> Signup and view all the answers

How many molecular compounds were confirmed in the latest analysis of the Murchison meteorite?

<p>14,000 (A)</p> Signup and view all the answers

What does the term 'abiogenesis' refer to in the context of life's origins?

<p>The spontaneous emergence of life from non-living matter. (D)</p> Signup and view all the answers

Which of the following is NOT a proposed source for organic molecules according to the discussed theories?

<p>Supernova explosions. (A)</p> Signup and view all the answers

Which kingdom was introduced in the late 1800s?

<p>Protista (A)</p> Signup and view all the answers

What was a major characteristic of the Archean Eon regarding Earth's surface?

<p>The Earth's surface was solid but very hot. (C)</p> Signup and view all the answers

What are cyanobacteria known for in relation to Earth's atmosphere?

<p>Photosynthesizing and releasing molecular oxygen. (B)</p> Signup and view all the answers

What information is true about the first prokaryotes that appeared?

<p>They were predominantly cyanobacteria. (C)</p> Signup and view all the answers

What is one effect of photosynthesis by early organisms on the atmosphere?

<p>It generated molecular oxygen, toxic to many existing life forms. (A)</p> Signup and view all the answers

Which eon is characterized by the first known fossils of living cells?

<p>Archaean Eon (A)</p> Signup and view all the answers

What were the pre-biotic conditions that established about 4 Ga primarily characterized by?

<p>Conditions supportive of early microbial life. (D)</p> Signup and view all the answers

Which organisms are responsible for photosynthesis and are considered some of the simplest forms of life?

<p>Cyanobacteria (A)</p> Signup and view all the answers

What was a significant consequence of the Oxygen Catastrophe?

<p>It caused a mass extinction of obligate anaerobic life forms. (A)</p> Signup and view all the answers

During which glaciation did the Ediacaran life forms experience a significant extinction?

<p>Marinoan glaciation (C)</p> Signup and view all the answers

Which organism's classification has been debated, with recent studies confirming it as an animal?

<p>Dickinsonia (C)</p> Signup and view all the answers

What characterized the phase 3 of the Great Oxygenation Event?

<p>O2 production begins and is absorbed by lands. (B)</p> Signup and view all the answers

What was the duration of the Proterozoic Eon?

<p>3.85 Ga to 0.54 Ga (B)</p> Signup and view all the answers

Which event is attributed to the massive rise in oxygen levels leading to an ecological crisis?

<p>Great Oxygenation Event (C)</p> Signup and view all the answers

What evidence supports Dickinsonia being classified as a metazoan?

<p>Quantitative studies of developmental biology confirm its classification. (D)</p> Signup and view all the answers

What is believed to have ended the Marinoan glaciation?

<p>The release of methane from permafrost (C)</p> Signup and view all the answers

What is the major characteristic of obligate thermophiles?

<p>They require high temperatures for growth. (D)</p> Signup and view all the answers

Which process do methanogens perform?

<p>Methanogenesis, producing methane in anoxic conditions. (B)</p> Signup and view all the answers

Which of the following best describes facultative thermophiles?

<p>They thrive at high temperatures but can also survive at lower temperatures. (D)</p> Signup and view all the answers

What role does methanogenesis play in organic matter decay?

<p>It is the last step that prevents carbon accumulation in anaerobic settings. (A)</p> Signup and view all the answers

Which compounds can be utilized by methanogens during the methanogenesis process?

<p>Small organic compounds including acetic acid and methanol. (D)</p> Signup and view all the answers

What is a characteristic feature of Halorubrum lacusprofundi?

<p>It can exist in temperatures as low as -40ËšC. (A)</p> Signup and view all the answers

What is the primary metabolic byproduct of methanogens in anaerobic conditions?

<p>Methane (D)</p> Signup and view all the answers

Where have members of the genus Halorubrum been discovered?

<p>In various saline lakes around the world including Antarctica and Africa. (C)</p> Signup and view all the answers

Flashcards

Rotten Meat Experiment

An experiment that disproved the theory of spontaneous generation (living things arise from non-living matter).

Swan-Neck Experiment

An experiment supporting biogenesis; it showed that organisms don't spontaneously generate in broth.

Chemical Evolution Hypothesis

Suggests that coacervates (organic matter) formed and evolved in Earth's oceans to become life.

Abiogenesis

The theory of life originating from non-living matter.

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Extraterrestrial Origin Hypothesis

Posits that organic molecules essential for life may have come from space.

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Murchison Meteorite

A meteorite that contained numerous organic compounds, similar to those formed in laboratory experiments.

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Miller-Urey Experiment

A lab experiment demonstrating the creation of amino acids—the building blocks of protein.

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Coacervates

Collections of organic molecules that may have been important precursors to life.

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RNA replicators

RNA molecules capable of making more RNA molecules without needing proteins.

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RNA world

A hypothesis suggesting RNA was the first genetic material, preceding DNA, and catalyzed its own replication.

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Ribozyme

An RNA molecule with catalytic activity; an RNA enzyme.

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Miller-Urey experiment

An experiment that simulated early Earth conditions, producing organic molecules like adenine.

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Adenine

A nitrogenous base found in DNA and RNA, produced in the Miller-Urey experiment.

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Genetic code (DNA/RNA)

A common base pairing system (A/U-T and G-C) in both DNA and RNA.

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RNA stability

RNA is less stable than DNA, and not as versatile as proteins.

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"RNA theory" bonding difficulty

Joining nucleotides in RNA is extremely challenging without enzymes; the sugar and base tend to break apart.

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RNA world

A hypothesis proposing that RNA, not DNA, was the primary genetic material in early life forms.

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Alternative genetic materials

Hypothetical molecules similar to RNA but possibly easier to form spontaneously in early Earth conditions.

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Prebiotic nucleotide synthesis

The creation of nucleotides (the building blocks of RNA and DNA) directly from simpler molecules without pre-formation of sugars or bases.

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Microfossils

Fossilized remains of microscopic life forms.

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Prokaryotes

Single-celled organisms lacking a nucleus and membrane-bound organelles.

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Origin of life

The process by which life arose from non-living matter.

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De novo synthesis

The creation of complex molecules directly from simpler ones.

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HCN (hydrogen cyanide)

A molecule potentially important in the formation of organic compounds.

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Archaean Eon

One of Earth's four principal eons, lasting from 3.8 billion to 2.5 billion years ago, characterized by early prokaryotes and increasing tectonic activity.

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Prokaryotes

Single-celled organisms lacking a nucleus and other membrane-bound organelles, such as bacteria and archaea.

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Cyanobacteria

Photosynthetic bacteria that produce oxygen as a byproduct.

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Oxidizing Atmosphere

An atmosphere containing significant amounts of oxygen, a result of photosynthesis.

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Stromatolites

Fossilised formations of photosynthetic bacteria, found on ancient coastlines.

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Photosynthesis

The process where organisms use light energy to convert carbon dioxide and water into sugar and oxygen.

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Number of Kingdoms (1950's)

Five kingdoms were classified in terms of taxonomic hierarchy in the 1950's.

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Early Earth conditions (4 Ga)

Conditions established about 4 billion years ago, lasting approximately 1.5 billion years, dominated by prebiotic chemistry.

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Kaigas glaciation

A glaciation event that occurred between 0.85 and 0.75 billion years ago.

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Sturtian glaciation

A major glaciation event, occurring between 0.78 and 0.67 billion years ago.

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Marinoan glaciation

A glaciation event (0.65-0.63 Ga), linked to a significant methane release from equatorial permafrost.

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Great Oxidation Event (GOE)

A significant increase in atmospheric oxygen levels between 2.45 and 1.85 Ga, driven by biological O2 production in the ocean.

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Ediacaran biota

Diverse life forms that existed during the Ediacaran period (635-542 million years ago), with possible extinction as a result of Marinoan glaciation.

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Cambrian explosion

A rapid diversification of life forms following the possible Ediacaran extinction.

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Dickinsonia

An example of Ediacaran life, a large, ribbed oval-shaped fossil resembling a bilaterally symmetrical animal.

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Proterozoic Eon

The geologic eon lasting from 2.5 billion to 0.54 billion years ago, ending with the Cambrian explosion.

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Obligate thermophiles

Microorganisms that require high temperatures for growth and reproduction.

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Facultative thermophiles

Microorganisms that can thrive at high temperatures, but also grow at lower temperatures.

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Hyperthermophiles

Extreme thermophiles with an optimal growth temperature above 80°C.

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Methanogenesis

An anaerobic respiration process where microorganisms use carbon dioxide to produce methane.

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Methanogens

Archaea that produce methane as a byproduct of metabolism.

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Halorubrum lacusprofundi

A type of halophilic Archaeon found in saline lakes, including Antarctica.

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Halophiles

Microorganisms that thrive in high salt concentrations.

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Anoxic conditions

Environments lacking oxygen.

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Study Notes

Readings

  • Geosystems: An Introduction to Physical Geography, 8th Edition by Robert W. Christopherson, American River College - ©2012 Pearson
  • An Introduction to Physical Geography and the Environment – 3rd Edition by J. Holden - ©2012 Pearson

Origin of the Atmosphere - Summary

  • Formation of Earth by Accretion (4.5 Ga): This process lasted 50-100 million years.
  • Differentiation: Elements sorted by density, leading to the formation of layers (crust, mantle, core, atmosphere).
  • Degassing of the Mantle (changes in redox status): Release of CO2 and H2O (approximately ±70 million years).
  • Primitive Atmosphere composition: H2O, CO2, CH4, N2, and O2.

What caused the Early Life to kick off?

  • After the Intense Bombardment episode (4.4 Ga): Earth's surface cooled, water vapor condensed, forming the first ocean.
  • Hydrogen isotope features of ocean water suggest the source of water is icy asteroids, not condensation.
  • The Cool Early Earth period lasted from approximately 4.4 Ga to 4.0 Ga. (Carbonaceous Chondrites are rocky meteorites with less than 35% metal).

Evolution of the Atmosphere

  • Second Atmosphere: Compatible with early life conditions (CO2, CH4, H2O, O2, and N2), warm climate (4.5 - 3.5 Ga).
  • Weathering of Rocks: Plays a crucial role in long-term carbon cycle.

Weathering of Rocks and the Long-term C Cycle

  • Early oceans and atmosphere were in equilibrium with atmospheric CO2 levels.
  • Weathering: Chemical reactions between atmospheric and surface compounds. A significant carbon sink over millions of years. (approximately ± 200 million years)
  • Atmospheric CO2 dissolves in water droplets in clouds, forming carbonic acid.
  • Carbonic acid reacts with minerals at varying rates, locking away atmospheric CO2 in carbonate sediments.

Chemical Stability of Minerals

  • Most Minerals are stable and react slowly with carbonic acid.
  • Gold and quartz (silicon dioxide) are difficult to erode.
  • Less stable minerals (e.g., sulfides and sulfur compounds with various metals) weather readily and leave behind accompanying metal salts.

Carbon Regulation

  • CO2 and H2O form carbonic acid during the silicate weathering process.
  • Diagram of the carbon cycle showing processes like silicate weathering, outgassing, continental plate, and oceanic plate.
  • Carbonate compensation depth is where dissolution of calcium carbonate exceeds precipitation, causing CO2 to outgas from the ocean.

Equations of Weathering

  • H2CO3 = HCO3- + H+ (Acid rains) Carbonic acid dissociates.
  • H2CO3 + CaCO3 = Ca(HCO3)2 (Weathering of carbonate rocks)
  • 2CO2 + 3H2O + CaSiO3 = Ca2++ 2HCO3- + H4SiO4 (Weathering of silicate rocks)
  • Release of CO2 + H2O.

First Organic Molecules

  • First organic molecules appeared early in Earth's formation.
  • Some authors believe that life was prevented from developing due to the Intense Bombardment episode.
  • Miller-Urey experiment (1953) demonstrates the feasibility of organic molecule synthesis.

The Swan-Neck Experiment (Pasteur, 1850)

  • Demonstrated that life doesn't arise spontaneously from non-living matter under specific conditions.
  • Provided evidence for biogenesis.
  • Different scenarios and outcomes depending whether the flask's neck was removed of not

Coacervates (Bungenberg de Jong, 1932)

  • Spherical aggregates of colloidal droplets. Held together by hydrophobic forces.
  • Proposed by Alexandr Oparin and John Haldane as crucial in the early theory of abiogenesis (origin of life).
  • Metabolism may have predated information replication in the origin of life.

The Miller-Urey Experiment

  • Experiment (1953) simulated early Earth conditions and showed organic molecule synthesis is possible in a reducing atmosphere.
  • Within a week, methane converted into compounds – formaldehyde, hydrogen cyanide, formic acid, urea, and amino acids.
  • Further experiments confirmed varied gas mixtures and energy sources like lightning, UV, radiations.

The Origin of Life

  • Pre-Biogenesis theories: Panspermia (microscopic life forms in space, extremophiles can survive in space), Spontaneous Generation (life arises from non-living material)
  • Biogenesis: Life arises from pre-existing life, opposed to spontaneous generation. Francesco Redi (1668) and Louis Pasteur (1850) provided evidence for this hypothesis.
  • Chemical evolution (1920s): Different types of coacervates formed in the primordial ocean, subject to a selection process that eventually leads to life.

Natural Synthesis vs. Extraterrestrial Origin

  • "Nuclear geyser model" suggests a terrestrial origin of first organic molecules, contrasting models with an extraterrestrial origin.
  • Organic molecules delivered to Earth by early Solar System bodies (e.g., comets, meteorites)
  • Murchison meteorite (1969) contained organic compounds similar to the Miller-Urey experiment. Analysis (2010) confirmed 14,000 molecular compounds, including 70 amino acids and di-amino acids.

Where did the organic building blocks of life come from?

  • Chyba/Sagan (1990s): Comets rich in organic molecules, an extraterrestrial source, potentially delivered to early Earth.

Natural Synthesis vs. Extraterrestrial Origin

  • Molecules exist in both left and right-handed structures (racemic mixture). Living organisms use only one form. Chiral synthesis may be possible.

Chirality

  • Chirality is a geometric property of some molecules. A molecule and its mirror image are not superposable.

In the most recent developments:

  • Scientists found an explanation for the chirality of molecules and specifically the reason why they are generally levorotatory.

Purine and pyrimidine compounds in Murchison Meteorite

  • Carbon isotope ratios for uracil and xanthine in the Murchison meteorite indicate a non-terrestrial origin for these compounds.

Origin of life - Theory and Definition

  • A generally accepted definition involves metabolism, membrane, and self-replication.
  • Coacervation may explain the appearance of membranes in the origin of life, but how to account for self-replication and metabolism.

The First Cells

  • Microfossils of cells: 3.5 billion years old, resembling present-day prokaryotes.

The Prokaryotes: Bacteria and Archaea

  • Diagram of changing classifications over time, showing evolving perspectives on organisms.
  • Timeline showing origin of life, prokaryotes, and eukaryotes. Timelines of major and minor extinction events.
  • Comparisons of the Archaea and Bacteria showing different structures and compositions.

The Archean Eon (3.8 Ga – 2.5 Ga)

  • The Earth was much hotter and had more active tectonic processes.
  • Water existed in liquid form.
  • Early prokaryotic life evolved, including oxygen-producing bacteria.
  • Continents formed during this Eon but not in the form they are known today.
  • Atmospheric oxygen levels were low during this time.

The Development of an Oxidizing Atmosphere

  • Cyanobacteria led to oxygenic photosynthesis.
  • Molecular oxygen (O2) is a product of photosynthesis and was toxic to certain early life.
  • Banded Iron Formations (BIFs) are evidence of oxygen reacting with iron in oceans.
  • Possible link between snowball Earth events and the timing of oxygen build-up.

The Snowball Earth Hypothesis

  • Possible episodes of global glaciation.
  • Ice sheets covering most of the Earth's surface, with limited exposed, open water.
  • Lowered reflectivity (albedo), positive feedback loop exacerbating cooling.
  • Release of CO2 by volcanic activity and thawing of ice lead to the onset of hothouse conditions.

Side effects of Oxygen production

  • Ozone formation, protecting organisms from harmful UV radiation.
  • Inhibition of methane-producing organisms.
  • Toxicity of O2 for early anaerobic life.

The alternative Slushball Earth Hypothesis

  • A hypothesis of an ice-covered Earth, with open water near the equator.

Deep Freeze and Complex Life

  • Some microscopic organisms flourished in challenging conditions during glacial episodes.
  • These refuges fostered adaptability and persistence of life.

Ice Ages and Glaciations

  • Episodes of global glaciation occurred during the Proterozoic Era.
  • The Cryogenian Period saw significant glacial events and subsequent mass extinctions, potentially leading to diversification of life.

The Great Oxygenation Event

  • Key event in the evolution of Earth's atmosphere.
  • A phase-wise depiction of the development of oxygen in the atmosphere over time.
  • The increase of O2 in the atmosphere created an ecological crisis, because of its toxicity to early anaerobic life.

The Proterozoic Eon (2.5 Ga – 0.54 Ga)

  • Earth cooled, re-heated, offering new opportunities for life.
  • The supercontinent Rodinia formed and later broke up.
  • Multi-cellular organisms developed.

The Textbook Paradigm

  • Modern classification of living organisms into three domains (Bacteria, Archaea, Eukarya).
  • rRNA sequencing and biochemical developments changed the classification of life (E. Haeckel's concept of monera).
  • Development of the three-domain model showing the evolutionary relationships between domains

Aerobic Pathways and the Cyanobacteria

  • Cyanobacteria perform oxygenic photosynthesis, producing O2 as a byproduct.
  • Cyanobacteria's role in shaping Earth's atmosphere.
  • Early photosynthetic organisms.
  • Stromatolites are fossil evidence of their activity.

Domain Archaea

  • Kingdom Archaebacteria: Organisms that use inorganic chemical reactions to produce organic matter. (e.g. use sulfur or other energy sources).
  • Methanogens: Produces methane as a byproduct (uses carbon dioxide).
  • Habitats in extreme environments such as hot springs and salt lakes.
  • Diverse metabolic adaptations.

Domain Eukarya

  • Eukaryoti cells are more complex than prokaryotes, having nucleus. The complexity and diversity of eukaryotic cells are likely results of endosymbiotic events.

The Endosymbiotic Theory

  • Explains the evolution of eukaryotic organelles (mitochondria, plastids) from symbiotic prokaryotic cells (engulfed by ancestral prokaryotic cells).
  • Genetic material of organelles differs from the cell itself. The existence of organelles' independent reproduction suggests their symbiotic relationship.
  • The theory explains the evolution of the cellular complexity of eukaryotic cells.

The Kingdom Fungi, Plantae, Animalia

  • General characteristics of fungi, plants, and animalia, including methods of nutrition, structures, reproduction, and overall biological roles in ecosystems.

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