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Questions and Answers
What type of docking considers both receptor and ligand flexibility?
What type of docking considers both receptor and ligand flexibility?
- Semi-flexible ligand docking
- Flexible docking (correct)
- Rigid body docking
- Pseudo-flexible ligand docking
In which type of docking are both partners treated as rigid?
In which type of docking are both partners treated as rigid?
- Rigid body docking (correct)
- (Pseudo/Semi)-Flexible ligand docking
- Unbound docking
- Flexible docking
What is the primary goal of 'bound' docking?
What is the primary goal of 'bound' docking?
- Producing a new co-crystallized complex
- Reconstructing the original complex of two molecules (correct)
- Introducing flexibility in the ligand
- Achieving conformational changes in the molecules
What is the critical element in a search procedure according to the text?
What is the critical element in a search procedure according to the text?
Which type of docking requires considering the active site of the protein?
Which type of docking requires considering the active site of the protein?
What is the primary difference between bound and unbound docking?
What is the primary difference between bound and unbound docking?
Which type of docking tests the validity of algorithms by reconstructing original complexes?
Which type of docking tests the validity of algorithms by reconstructing original complexes?
'(Pseudo/Semi)-Flexible ligand docking' mainly focuses on which element being flexible?
'(Pseudo/Semi)-Flexible ligand docking' mainly focuses on which element being flexible?
'Grid Generation Construction' is primarily associated with which aspect of molecular docking?
'Grid Generation Construction' is primarily associated with which aspect of molecular docking?
'Speed and effectiveness in covering relevant conformational space' are highlighted as critical in which phase of molecular docking?
'Speed and effectiveness in covering relevant conformational space' are highlighted as critical in which phase of molecular docking?
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