Molecular Biology Quiz: Chromatin and DNA
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Questions and Answers

What role does histone H1 play in chromatin structure?

  • It compacts nucleosomes into a chromatin fiber. (correct)
  • It initiates the transcription of DNA.
  • It acts as a core component of the nucleosome.
  • It binds directly to DNA, causing it to unwind.
  • Which of the following correctly describes heterochromatin?

  • It involves DNA that wraps around fewer core histones.
  • It is characterized by more compact DNA that is not transcribed. (correct)
  • It contains genes that are frequently expressed.
  • It is a less compact form of DNA that is actively transcribed.
  • How many core histone proteins are included in a nucleosome?

  • 10 core histones are present in a single nucleosome.
  • 6 core histones are present in a single nucleosome.
  • 8 core histones are present in a single nucleosome. (correct)
  • 4 core histones are present in a single nucleosome.
  • What is the structural feature commonly referred to as the 'beads on a string'?

    <p>The winding of DNA around histone proteins. (A)</p> Signup and view all the answers

    Which of the following histone proteins is not part of the core histone set in a nucleosome?

    <p>Histone H5 (A)</p> Signup and view all the answers

    What is the primary function of DNA as described in the learning outcomes?

    <p>To serve as the genetic material for inheritance (B)</p> Signup and view all the answers

    Which of the following best describes the discoveries made by Avery, MacLeod, and McCarty in their transformation experiments?

    <p>They identified nucleic acid as the cause of transformation. (B)</p> Signup and view all the answers

    What is a key requirement for genetic material as stated in the requirements for genetic material?

    <p>It must be stable over time and faithfully replicated. (D)</p> Signup and view all the answers

    How did Hershey and Chase contribute to the understanding of DNA in genetic material?

    <p>They demonstrated that DNA is responsible for transferring genetic information. (A)</p> Signup and view all the answers

    What aspect of nucleic acids was highlighted by Friedrich Miescher's discovery?

    <p>Its high molecular weight and acidity. (D)</p> Signup and view all the answers

    What is one of the primary roles of eukaryotic chromosomes mentioned in the learning outcomes?

    <p>To provide a stable structure for gene storage. (D)</p> Signup and view all the answers

    Which statement best summarizes the 'Grand Challenges' mentioned in the content?

    <p>They address fundamental societal issues requiring genetic solutions. (D)</p> Signup and view all the answers

    What role does Georgia Dunston hold at Howard University?

    <p>Professor of Human Immunogenetics (A)</p> Signup and view all the answers

    In which populations did Georgia Dunston examine the differences in the manifestation of Type 2 Diabetes?

    <p>West African and Finnish populations (B)</p> Signup and view all the answers

    What fundamental structure does DNA form?

    <p>Double helix (D)</p> Signup and view all the answers

    Which component is NOT part of a nucleotide?

    <p>Ribose (B)</p> Signup and view all the answers

    What indicates the directionality of a DNA strand?

    <p>The polarity of the strands (D)</p> Signup and view all the answers

    In the context of nucleic acids, what is a nucleoside composed of?

    <p>Sugar and base (D)</p> Signup and view all the answers

    What forms the backbone of a DNA molecule?

    <p>Sugar-phosphate groups (C)</p> Signup and view all the answers

    What type of bond holds the two strands of DNA together?

    <p>Hydrogen bonds (D)</p> Signup and view all the answers

    What is the significance of the research conducted on African populations in terms of genetics?

    <p>It highlighted genetic variations lacking representation in earlier studies. (A)</p> Signup and view all the answers

    How are the two DNA strands oriented in relation to each other?

    <p>Antiparallel to each other (C)</p> Signup and view all the answers

    What is the diameter of the helix structure proposed in the conclusions of Gosling and Franklin's study?

    <p>20 Å (D)</p> Signup and view all the answers

    What bonding mechanism is proposed by Watson and Crick to stabilize the structure of DNA?

    <p>Hydrogen bonding between complementary bases (D)</p> Signup and view all the answers

    Which of the following statements about Rosalind Franklin is accurate?

    <p>She used X-ray crystallography to study the structure of DNA. (C)</p> Signup and view all the answers

    What aspect of Watson's remarks led to his suspension from his position at CSHL?

    <p>His comments regarding race and intelligence (D)</p> Signup and view all the answers

    Which nitrogen base pairs with adenine in the DNA structure proposed by Watson and Crick?

    <p>Thymine (B)</p> Signup and view all the answers

    How many helical chains are described in the proposed DNA structure by Watson and Crick?

    <p>Two (D)</p> Signup and view all the answers

    Which of the following pairs of bases correctly match in the double helix structure of DNA?

    <p>Adenine and Thymine (C)</p> Signup and view all the answers

    Which technique was vital for understanding the helical structure of DNA, as used by Rosalind Franklin?

    <p>X-ray crystallography (D)</p> Signup and view all the answers

    What did James Watson imply regarding the best environment for a feminist based on his remarks about Rosalind Franklin?

    <p>In a male-dominated lab (C)</p> Signup and view all the answers

    What is responsible for holding the two DNA strands together?

    <p>Hydrogen bonds between complementary base pairs (B)</p> Signup and view all the answers

    Which pairing of nucleobases in DNA involves 2 hydrogen bonds?

    <p>Adenine and Thymine (C)</p> Signup and view all the answers

    What is the significance of the antiparallel structure of DNA strands?

    <p>It ensures that base pairing is complementary and stable (D)</p> Signup and view all the answers

    Which of the following describes the genetic information carried in DNA?

    <p>It is carried in the sequence of nitrogenous bases (D)</p> Signup and view all the answers

    How many hydrogen bonds are formed between Guanine and Cytosine in DNA?

    <p>3 hydrogen bonds (B)</p> Signup and view all the answers

    Why is DNA considered to have a 'quaternary code'?

    <p>It consists of four possible bases (D)</p> Signup and view all the answers

    Which characteristic is NOT a criterion for genetic material?

    <p>Able to control metabolic processes (A)</p> Signup and view all the answers

    What is the primary role of the sugar-phosphate backbone in DNA?

    <p>To maintain structure and stability (B)</p> Signup and view all the answers

    Which statement accurately describes the process of DNA denaturation?

    <p>It involves the disruption of hydrogen bonds between base pairs (B)</p> Signup and view all the answers

    What mechanism allows DNA to undergo evolution?

    <p>Controlled changes in genetic sequences (D)</p> Signup and view all the answers

    What is one of the primary reasons DNA is considered better than RNA for the permanent storage of genetic information?

    <p>DNA contains deoxyribose, which is more stable than ribose (A)</p> Signup and view all the answers

    What best describes the role of RNA splicing in eukaryotic cells?

    <p>It removes non-coding sequences from pre-mRNA (A)</p> Signup and view all the answers

    Which of the following statements about the central dogma of molecular biology is true?

    <p>It describes the flow of genetic information as DNA to RNA to protein (C)</p> Signup and view all the answers

    How do eukaryotic cells control the export of RNAs from the nucleus?

    <p>By using protein complexes that bind to RNA molecules (D)</p> Signup and view all the answers

    What was a key method used in the Pulse-Chase Experiment to study protein synthesis?

    <p>Exposure to radioactive uracil (A)</p> Signup and view all the answers

    Which of the following features distinguishes RNA from DNA in terms of chemical composition?

    <p>RNA is composed of ribonucleotides containing ribose sugar (D)</p> Signup and view all the answers

    Which aspect of translation is primarily concerned with the initiation phase?

    <p>The recruitment of ribosomal subunits and the formation of the start codon complex (D)</p> Signup and view all the answers

    What primarily performs the splicing reaction in eukaryotic cells?

    <p>Small nuclear RNA molecules (A)</p> Signup and view all the answers

    What type of mRNA processing is indicated by the term 'alternative splicing'?

    <p>Same gene producing multiple mRNA transcripts (B)</p> Signup and view all the answers

    What is the role of RNA binding proteins in the process of mRNA export from the nucleus?

    <p>To mark mature and intact mRNA for export (A)</p> Signup and view all the answers

    What percentage of human genes are estimated to undergo alternative splicing?

    <p>95% (B)</p> Signup and view all the answers

    What happens to incorrectly synthesized mRNAs in the nucleus?

    <p>They are broken down and nucleotides are reused (B)</p> Signup and view all the answers

    What is the primary function of messenger RNA (mRNA) in the cell?

    <p>Transport genetic instructions to ribosomes (D)</p> Signup and view all the answers

    Which statement accurately describes the transcription process in the central dogma of molecular biology?

    <p>DNA is transcribed into RNA (B)</p> Signup and view all the answers

    What does the presence of uracil in RNA signify when compared to DNA?

    <p>Uracil replaces thymine in base pairing (C)</p> Signup and view all the answers

    Which discovery related to RNA and DNA polymerases was recognized with a Nobel Prize in 1959?

    <p>The synthesis mechanism of RNA and DNA (A)</p> Signup and view all the answers

    How do RNA and DNA differ at the molecular level?

    <p>RNA contains ribose, whereas DNA contains deoxyribose (D)</p> Signup and view all the answers

    What was one of the significant implications of transcription in genetic expression?

    <p>It allows selective expression of genes for protein production (D)</p> Signup and view all the answers

    In which way does messenger RNA (mRNA) differ from transfer RNA (tRNA)?

    <p>mRNA serves as the template for protein synthesis, while tRNA brings amino acids to the ribosome (C)</p> Signup and view all the answers

    Which event directly follows the transcription of DNA into RNA?

    <p>Translation of mRNA into protein (C)</p> Signup and view all the answers

    Which of the following pairs of molecules are primarily responsible for synthesizing new RNA and DNA strands?

    <p>DNA polymerase and RNA polymerase (A)</p> Signup and view all the answers

    What makes RNA more chemically reactive than DNA?

    <p>RNA contains ribose with a 2' OH group. (B)</p> Signup and view all the answers

    Which statement best describes the structural nature of RNA?

    <p>RNA is largely single-stranded but may form base pairs. (A)</p> Signup and view all the answers

    What type of RNA is primarily responsible for coding for proteins?

    <p>mRNA (D)</p> Signup and view all the answers

    Which RNA polymerase is specifically responsible for transcribing mRNAs in eukaryotes?

    <p>RNA Polymerase II (C)</p> Signup and view all the answers

    Which of the following is a major function of RNA in cells?

    <p>Catalyzing biochemical reactions. (D)</p> Signup and view all the answers

    What distinguishes rRNA from other forms of RNA?

    <p>It is a major component of ribosomes. (D)</p> Signup and view all the answers

    Which feature contributes to RNA's ability to form varied 3D shapes?

    <p>Its single-stranded nature allowing base pairing. (D)</p> Signup and view all the answers

    What role does tRNA perform in the process of translation?

    <p>It helps in the assembly of amino acids into proteins. (C)</p> Signup and view all the answers

    How does the structure of RNA differ from that of DNA at a fundamental level?

    <p>RNA contains a 2' OH group while DNA does not. (B)</p> Signup and view all the answers

    Which characteristic of RNA contributes to its short-lived nature compared to DNA?

    <p>The presence of ribose sugar. (C)</p> Signup and view all the answers

    What is the primary direction of RNA synthesis?

    <p>5’ to 3’ direction (B)</p> Signup and view all the answers

    Which components are directly involved in RNA synthesis?

    <p>Ribonucleotide triphosphates (D)</p> Signup and view all the answers

    What modification occurs at the 5' end of eukaryotic mRNA?

    <p>Capping with an atypical nucleotide (D)</p> Signup and view all the answers

    What is the purpose of adding a poly-A tail to the 3' end of mRNA?

    <p>To enhance mRNA stability (A)</p> Signup and view all the answers

    Which of the following is NOT a step in eukaryotic mRNA processing?

    <p>Adding a 3' cap with a conventional nucleotide (D)</p> Signup and view all the answers

    What type of bond is formed during the synthesis of RNA?

    <p>Phosphodiester bonds between nucleotides (B)</p> Signup and view all the answers

    What happens to the pyrophosphate molecule during RNA synthesis?

    <p>It is lost as energy is released (B)</p> Signup and view all the answers

    What are introns?

    <p>Non-coding sequences in genes (B)</p> Signup and view all the answers

    What defines the antiparallel structure of DNA strands?

    <p>One strand runs 5’ to 3’ and the other runs 3’ to 5’ (D)</p> Signup and view all the answers

    Which statement about RNA polymerase is most accurate?

    <p>It catalyzes the formation of phosphodiester bonds (D)</p> Signup and view all the answers

    How many nucleotide bases are needed to code for one amino acid?

    <p>3 nucleotides (C)</p> Signup and view all the answers

    Which of the following is NOT a key step in the process of translation?

    <p>Transcription (A)</p> Signup and view all the answers

    Which key characteristic of the genetic code is true?

    <p>It is universal across all organisms. (A), It consists of continuous sequences without punctuation. (C), It is triplet-based and degenerative. (D)</p> Signup and view all the answers

    What was a significant contribution of Har Gobind Khorana to the understanding of the genetic code?

    <p>He identified the order of nucleotides in nucleic acids. (A)</p> Signup and view all the answers

    What is one reason scientists turned to mRNA vaccines during the COVID-19 pandemic?

    <p>They require less time and resources to develop. (B), They do not involve the traditional methods of vaccine development. (D)</p> Signup and view all the answers

    Who were two of the key researchers associated with cracking the genetic code?

    <p>Khorana and Nirenberg (C)</p> Signup and view all the answers

    In the central dogma of molecular biology, which process comes after transcription?

    <p>Translation (C)</p> Signup and view all the answers

    What challenge does the sequence of 4 nucleotide bases present in coding for 20 amino acids?

    <p>Insufficient combinations exist. (C)</p> Signup and view all the answers

    What is the primary role of transfer RNAs (tRNAs) during translation?

    <p>To decipher the codons of mRNA (B)</p> Signup and view all the answers

    Which site on the ribosome is primarily responsible for the exit of tRNA after amino acid transfer?

    <p>E-site (B)</p> Signup and view all the answers

    Which of the following statements accurately describes the nature of the genetic code?

    <p>It consists of codons that specify amino acids (C)</p> Signup and view all the answers

    In the context of eukaryotic translation, what function does the UTR (untranslated region) serve?

    <p>It plays a role in the initiation and regulation of translation (A)</p> Signup and view all the answers

    Which of the following best describes the role of ribosomal RNA (rRNA) in the formation of ribosomes?

    <p>It combines with proteins to form the structural core of ribosomes (C)</p> Signup and view all the answers

    What is a notable characteristic of the genetic code regarding its reading frame?

    <p>It reads the mRNA in sets of three nucleotides (codons). (A)</p> Signup and view all the answers

    Which statement accurately reflects the significance of stop codons in the genetic code?

    <p>Stop codons signal the termination of protein synthesis. (A)</p> Signup and view all the answers

    What does redundancy in the genetic code imply about amino acids and tRNAs?

    <p>Multiple tRNAs can correspond to a single amino acid. (A)</p> Signup and view all the answers

    In which type of genetic material is variation of the genetic code most commonly observed?

    <p>Mitochondrial genetic material. (C)</p> Signup and view all the answers

    Who were the key scientists awarded the Nobel prize for their work related to the genetic code and tRNAs?

    <p>Marshall Nirenberg and Har Gobind Khorana. (A)</p> Signup and view all the answers

    Which of the following correctly describes the universal nature of the genetic code?

    <p>The genetic code is universal but some variations exist. (C)</p> Signup and view all the answers

    What role do tRNAs play in translation as per the understanding of the genetic code?

    <p>tRNAs help in reading the codons and delivering the correct amino acids. (D)</p> Signup and view all the answers

    Which of the following represents a major application of understanding the single-letter code for amino acids?

    <p>Analyzing protein sequences digitally using bioinformatics. (B)</p> Signup and view all the answers

    What does the phrase 'the genetic code is universal' imply with respect to most organisms?

    <p>It signifies that the same codons usually encode the same amino acids across species. (A)</p> Signup and view all the answers

    What is the reason that the genetic code is considered degenerate?

    <p>There are 64 different codons for 20 amino acids. (C)</p> Signup and view all the answers

    Why is the genetic code described as not overlapping?

    <p>Each nucleotide is part of only one codon. (D)</p> Signup and view all the answers

    What technique did Crick and Brenner use to identify mutations in the rII region?

    <p>Recombination testing. (D)</p> Signup and view all the answers

    What impact does proflavin have on DNA?

    <p>It intercalates and can lead to insertions or deletions. (A)</p> Signup and view all the answers

    What type of mutation occurs when an extra base is inserted into the DNA sequence?

    <p>Frameshift mutation. (C)</p> Signup and view all the answers

    Which sequence is an example of a wild type sequence from Crick’s hypothesis?

    <p>THE BIG RED FOX ATE THE EGG (C)</p> Signup and view all the answers

    What conclusion was drawn when combining mutants from Crick’s experiments?

    <p>Recombined mutants can produce pseudo-wild type forms. (B)</p> Signup and view all the answers

    In Crick's experiments, what was the outcome of combining two mutants of the same type?

    <p>They still exhibited a mutant phenotype. (A)</p> Signup and view all the answers

    What is suggested by the presence of distinctive large plaques in bacteriophage T4?

    <p>They suggest a lethal mutation in the rII region. (D)</p> Signup and view all the answers

    How does the intercalation of proflavin affect the DNA sequence?

    <p>It leads to insertions or deletions of bases. (C)</p> Signup and view all the answers

    What is the primary role of mRNA in the process of translation?

    <p>Carries genetic information from DNA to ribosomes (B)</p> Signup and view all the answers

    Which specific function does tRNA perform in the translation process?

    <p>Identifies specific amino acids and matches them with mRNA codons (B)</p> Signup and view all the answers

    What is the significance of 'wobble' in tRNA function?

    <p>It enables a tRNA to tolerate certain mismatches at the codon position (D)</p> Signup and view all the answers

    How are amino acids connected to their respective tRNAs in the translation process?

    <p>By aminoacyl-tRNA synthetases during a process called charging (B)</p> Signup and view all the answers

    Which type of RNA is primarily responsible for making up the structure of the ribosome?

    <p>rRNA (A)</p> Signup and view all the answers

    What molecular process is necessary for a tRNA to bind the correct amino acid?

    <p>Aminoacylation (D)</p> Signup and view all the answers

    What is a characteristic feature of tRNA that aids in the translation process?

    <p>It contains an amino acid binding site (B)</p> Signup and view all the answers

    What does the term 'charging' refer to in the context of translation?

    <p>Attaching amino acids to tRNA molecules (D)</p> Signup and view all the answers

    Which aspect of the tRNA structure is primarily responsible for its ability to recognize mRNA codons?

    <p>The anticodon loop (B)</p> Signup and view all the answers

    What is the relationship between aminoacyl-tRNA synthetases and tRNA?

    <p>Synthetases link amino acids to their specific tRNAs (A)</p> Signup and view all the answers

    Flashcards

    What is Genetics?

    The study of genes, genetic variation, and inheritance in organisms.

    What is DNA?

    The molecule responsible for storing and transmitting genetic information in living organisms.

    What is DNA Replication?

    The process by which DNA replicates itself, ensuring that each new cell receives a complete copy of the genetic information.

    What is Gene Expression?

    The process by which genetic information encoded in DNA is used to synthesize proteins, which carry out various functions in the cell.

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    What are mutations?

    Changes or alterations in the sequence of DNA, which may be beneficial, harmful, or neutral.

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    What is a chromosome?

    The organized structure of DNA and associated proteins within the nucleus of eukaryotic cells. They carry genetic information in the form of genes.

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    What is genomics?

    The study of how genes interact with each other and with the environment to influence traits and disease.

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    What is the shape of DNA?

    DNA, the molecule of life, is shaped like a twisted ladder or spiral staircase.

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    What technique did Rosalind Franklin use to study DNA?

    X-ray crystallography is a technique that uses the diffraction pattern of X-rays to determine the arrangement of atoms in a molecule. Rosalind Franklin used this technique to capture images of the DNA molecule.

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    What are base pairs in DNA?

    The two strands of DNA are held together by complementary base pairs. Adenine (A) pairs with thymine (T), and guanine (G) pairs with cytosine (C).

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    Who proposed the double helix model of DNA?

    James Watson and Francis Crick are credited with proposing the double helix model of DNA. They used Rosalind Franklin's X-ray diffraction images and other research to build their model.

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    What is the significance of the Watson-Crick model?

    The Watson-Crick model of DNA explains how genetic information is stored and passed on from one generation to the next.

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    What was Rosalind Franklin's contribution to the discovery of DNA's structure?

    Rosalind Franklin's work played a crucial role in the discovery of DNA's structure, but her contributions were not fully recognized at the time. She died tragically at a young age, before the Nobel Prize was awarded to Watson, Crick and Wilkins.

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    What controversy did James Watson face later in his life?

    Watson's controversial views on race and intelligence led to his suspension from his position at Cold Spring Harbor Laboratory in 2007.

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    What is pseudoscientific racism?

    This refers to false scientific claims made to support bias against a particular race or group.

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    Type 2 Diabetes

    A type of diabetes that affects how the body regulates blood sugar levels. It is more common in West African populations compared to Finnish populations.

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    Genetic Variations

    Variations in DNA sequence among individuals or populations.

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    Human Immunogenetics

    The study of how genes influence the immune system's function and response to pathogens.

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    Genomics

    A branch of biology that studies the complete set of genes and their interactions within an organism.

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    DNA

    A complex molecule that carries genetic information in the form of a double helix structure.

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    Nucleotide

    A repeating unit in DNA consisting of a sugar molecule, a phosphate group, and one of four nitrogenous bases.

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    Antiparallel DNA Strands

    The two strands of DNA run in opposite directions, with one strand running 5' to 3' and the other 3' to 5'.

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    DNA Sample Acquisition

    The process of acquiring, testing, and analyzing DNA samples from individuals.

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    DNA Replication

    The process of making copies of DNA, ensuring that each new cell receives a complete copy of genetic information.

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    DNA Biobank

    A collection of DNA samples from individuals representing various populations.

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    What is the shape of the DNA?

    DNA is not a straight line but is twisted into a spiral shape, like a ladder that's been twisted.

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    How are the DNA strands held together?

    The two strands of DNA are held together by weak bonds between complementary base pairs.

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    What are the complementary base pairs in DNA?

    Adenine (A) always pairs with thymine (T) and guanine (G) always pairs with cytosine (C).

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    What is the significance of the planar nature of base pairs?

    Each base pair is flat and can stack on top of each other, helping form the double helix structure of DNA.

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    What is meant by 'antiparallel' strands in DNA?

    DNA is made up of two strands that run in opposite directions, like a two-lane highway.

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    How does DNA carry genetic information?

    The sequence of bases in DNA holds the genetic information that determines an organism's traits.

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    Why is DNA considered a digital code?

    The arrangement of bases in DNA can be easily stored and analyzed by computers using a simple binary code.

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    Why is DNA's stability important?

    DNA is a stable molecule that can be accurately copied during cell division. This allows for the transmission of genetic information from one generation to the next.

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    How does DNA control the expression of traits?

    The genetic code in DNA is copied into RNA allowing the production of proteins that control an organism's traits.

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    How does DNA change in a controlled way?

    DNA can change over time through mutations, which are alterations in the sequence of bases. These changes can be beneficial, harmful, or neutral.

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    What is a nucleosome?

    DNA wraps twice around a core of eight histone proteins, forming a bead-like structure called a nucleosome. This is the first level of DNA packaging.

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    What role does Histone H1 play in chromosome structure?

    Histone H1 acts like a binder, pulling nucleosomes together to form a more compact structure known as a chromatin fiber.

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    How does DNA get condensed into a chromosome?

    Scaffold proteins are involved in the higher-order packaging of chromatin fibers, further condensing the DNA into a chromosome. Think of it like a scaffolding structure holding the chromatin fibers together.

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    What is the difference between euchromatin and heterochromatin?

    Euchromatin refers to less condensed regions of DNA that are actively transcribed, meaning genes in these regions are being expressed. Heterochromatin, on the other hand, is more condensed and contains DNA that is not actively transcribed.

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    How do you determine the complementary base sequence of a DNA strand?

    DNA is a double helix, and its base sequence is read in a 5' to 3' direction. The complementary strand of DNA will have an opposite base sequence, going from 3' to 5'. Remember that adenine (A) pairs with thymine (T), and guanine (G) pairs with cytosine (C).

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    What is the central dogma?

    The central dogma describes the flow of genetic information from DNA to RNA to protein. DNA is transcribed into RNA, and RNA is translated into protein. This process underlies gene expression, the production of functional proteins from genetic instructions.

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    How do RNA and DNA differ?

    RNA and DNA are both nucleic acids, but they differ in their chemical composition and structure. RNA contains uracil (U) instead of thymine (T) in DNA. RNA is typically single-stranded, while DNA is double-stranded. RNA is also shorter than DNA.

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    Why is DNA better for long-term genetic storage?

    DNA is a more stable molecule than RNA because it has a deoxyribose sugar, which lacks a hydroxyl group compared to ribose in RNA. This makes DNA less prone to degradation. DNA's double-stranded structure also provides additional stability.

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    What is the direction of transcription?

    Transcription proceeds in a 5' to 3' direction. This means that the RNA polymerase enzyme reads the DNA template strand from 3' to 5', but produces a complementary RNA strand in the 5' to 3' direction.

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    How is RNA splicing performed?

    Eukaryotic RNA splicing is carried out by snRNPs, which are small nuclear ribonucleoproteins. These are composed of RNA and protein. Introns, non-coding sequences, are removed, and exons, coding sequences, are joined to produce a mature mRNA molecule.

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    How does the cell regulate RNA export?

    Nuclear pore complexes are large channels that control the passage of molecules between the nucleus and cytoplasm. They act as selective gates, allowing only mature mRNA molecules to exit the nucleus for translation.

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    Explain the pulse-chase experiment.

    In the pulse-chase experiment, cells were exposed to radioactive uracil, a component of RNA. This allowed researchers to track RNA synthesis and movement within the cell over time. The results showed that RNA was synthesized in the nucleus and then moved to the cytoplasm, suggesting its role in protein synthesis.

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    What is the role of mRNA?

    RNA, a molecule similar to DNA but with a single strand and the base Uracil instead of Thymine, carries genetic instructions from the nucleus to the ribosomes for protein synthesis.

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    What did Ochoa and Kornberg win the Nobel Prize for?

    Ochoa and Kornberg were awarded the Nobel Prize in 1959 for discovering enzymes responsible for synthesizing RNA and DNA, respectively. These enzymes are crucial for replicating and transcribing genetic information.

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    What is the consequence of the sugar difference between RNA and DNA?

    The absence of a hydroxyl group at the 2' position of the sugar molecule in DNA makes DNA more stable than RNA. This stability is essential for storing genetic information over long periods.

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    What are ribosomes and what do they do?

    The ribosomes are responsible for protein synthesis. They read the genetic instructions carried by mRNA and assemble amino acids into protein chains.

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    Who won the Nobel Prize in 1965 for their work on gene regulation?

    François Jacob, Jacques Monod, and André Lwoff received the Nobel Prize in Physiology or Medicine in 1965 for their groundbreaking work on gene regulation. Their research shed light on how gene expression is controlled in bacteria.

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    What is the role of RNA in protein synthesis?

    RNA acts as a messenger, carrying genetic instructions from DNA in the nucleus to the protein-making machinery in the cytoplasm. This process is crucial for gene expression.

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    How does Uracil in RNA pair with Adenine?

    Uracil (U) in RNA base-pairs with Adenine (A) similarly to Thymine (T) in DNA. This pairing is critical for the proper translation of genetic code during protein synthesis.

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    RNA vs. DNA - Reactivity

    RNA is more reactive than DNA because the ribose sugar in RNA contains a hydroxyl group (OH) at the 2' carbon, making it more susceptible to chemical reactions.

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    DNA vs. RNA - Function

    DNA is primarily responsible for long-term storage of genetic information, while RNA is involved in the short-term processes of gene expression.

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    RNA - Structure

    RNA typically exists as a single-stranded molecule, but it can fold into complex 3D structures by forming base pairs within its own sequence, creating regions of double-strandedness.

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    RNA - Functions

    RNA molecules perform a wide variety of functions in cells, including carrying genetic information, acting as enzymes (ribozymes), and regulating gene expression.

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    mRNA - Function

    Messenger RNA (mRNA) is a type of RNA that carries the genetic code from DNA to ribosomes, where protein synthesis takes place.

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    Transcription: DNA to RNA

    Transcription is the process by which RNA polymerase uses a DNA template to synthesize a complementary RNA molecule.

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    RNA Polymerase

    RNA polymerase is an enzyme responsible for synthesizing RNA molecules from a DNA template.

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    Eukaryotic RNA Polymerases

    In eukaryotic cells, three different RNA polymerases carry out transcription. RNA polymerase I transcribes ribosomal RNA (rRNA), RNA polymerase II transcribes messenger RNA (mRNA), and RNA polymerase III transcribes transfer RNA (tRNA).

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    rRNA - Function

    Ribosomal RNA (rRNA) is a type of RNA that forms part of the ribosomes, which are the protein synthesis machinery of cells.

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    tRNA - Function

    Transfer RNA (tRNA) is a type of RNA that carries amino acids to ribosomes during protein synthesis.

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    Introns

    Non-coding sequences within eukaryotic genes that are removed during RNA processing.

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    Spliceosome

    A complex machinery composed of snRNAs and proteins responsible for splicing out introns and joining exons in eukaryotic pre-mRNA.

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    Alternative splicing

    The process by which a single pre-mRNA molecule can be spliced in different ways, leading to the production of multiple protein isoforms from the same gene.

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    RNA export protein

    A type of RNA-binding protein that recognizes and binds to mature mRNA molecules, marking them for export from the nucleus.

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    Nuclear pore complex

    A large channel in the nuclear membrane that regulates the passage of molecules between the nucleus and cytoplasm, allowing only mature mRNA to exit.

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    How does RNA Synthesis Work?

    RNA polymerase, the enzyme that makes RNA, uses a DNA strand as a template to build a complementary RNA molecule. One strand serves as a template, and the other has the same sequence as the RNA being made.

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    Direction of RNA Synthesis

    RNA production occurs in a 5' to 3' direction, meaning the RNA strand is assembled from the 5' end to the 3' end. The template DNA strand is read in the opposite direction, from 3' to 5'.

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    Why is mRNA Processing Important?

    Eukaryotic cells have a nucleus, where DNA is kept, and a cytoplasm, where proteins are made. The mRNA is processed to make sure it's ready for translation.

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    What's the 5' Cap on mRNA?

    A 5' cap is a modified guanine nucleotide added to the 5' end of the mRNA. This protects it from degradation and helps it bind to ribosomes, where protein synthesis occurs.

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    What's the Poly-A Tail on mRNA?

    A poly-A tail, a chain of adenine nucleotides, is added to the 3' end. It helps with mRNA stability, increases its lifespan, and aids in translation initiation.

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    What are Introns?

    Introns are non-coding sequences within the mRNA transcript. They are removed during splicing, leaving only the exons, the coding regions, behind.

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    How is mRNA Translated into Protein?

    The sequence of bases in mRNA is translated into a sequence of amino acids, which form a chain, making the final protein. This translation occurs in the ribosomes.

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    What does a Ribosome Do?

    Ribosomes are tiny cellular factories that read the mRNA code and use it to assemble amino acids into a protein chain. They're like protein builders.

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    What is mRNA Splicing?

    Before mRNA can leave the nucleus, it undergoes a process called splicing. This involves removing introns, non-coding regions, and joining together exons, coding regions, to make a mature mRNA transcript ready for translation.

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    What is the genetic code?

    The genetic code is a set of rules that determines how the sequence of nucleotides in DNA or RNA is translated into a sequence of amino acids in a protein.

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    What are the key characteristics of the genetic code?

    The genetic code is universal, meaning it is the same in all living organisms. It is non-overlapping, meaning each nucleotide is part of only one codon. It is degenerate, meaning that multiple codons can code for the same amino acid.

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    What are the roles of RNA in translation?

    mRNA carries the genetic information from DNA to the ribosomes, tRNA carries amino acids to the ribosomes, and rRNA is a structural component of the ribosomes.

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    What is translation?

    Translation is the process by which the genetic information encoded in mRNA is used to synthesize a protein.

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    What happens during initiation in translation?

    The first stage of translation is initiation, where the ribosome binds to the mRNA and the first tRNA carrying the amino acid methionine binds to the start codon.

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    What happens during elongation in translation?

    The second stage of translation is elongation, where the ribosome moves along the mRNA, adding amino acids to the growing polypeptide chain.

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    What happens during termination in translation?

    The final stage of translation is termination, where the ribosome encounters a stop codon and releases the completed polypeptide chain.

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    How was the genetic code cracked?

    The genetic code was cracked through a series of experiments that used synthetic mRNA molecules to determine the codons that coded for each amino acid.

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    Codons

    Three-nucleotide sequences in mRNA that code for specific amino acids.

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    Translation

    The process by which the sequence of nucleotides in mRNA is translated into a sequence of amino acids in a protein.

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    Genetic Code

    The set of rules that determines how the sequence of nucleotides in DNA or RNA is translated into a sequence of amino acids in a protein.

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    Ribosomes

    Cellular structures responsible for protein synthesis. They read the genetic code in mRNA and assemble amino acids into protein chains.

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    Codon (DNA)

    A sequence of three nucleotides in DNA that codes for an amino acid.

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    Anticodon

    A set of three nucleotides in tRNA that is complementary to a codon in mRNA.

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    Initiation (translation)

    The stage of translation where the ribosome binds to the mRNA and the first tRNA carrying the amino acid methionine binds to the start codon.

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    Elongation (translation)

    The stage of translation where the ribosome moves along the mRNA, adding amino acids to the growing polypeptide chain.

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    Is the genetic code overlapping?

    The genetic code is not overlapping, meaning a single base mutation affects only one amino acid. This is because changing a single base would change multiple amino acids if the code was overlapping.

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    How does Proflavin affect DNA?

    Proflavin, a planar molecule, can intercalate between base pairs in DNA, causing either an insertion or deletion of a single base.

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    What are frameshift mutations?

    Frameshift mutations alter the reading frame of the genetic code, leading to a change in the amino acid sequence. This is because the code is read in groups of three bases, and adding or removing a base shifts this reading frame.

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    What is a double mutant?

    A double mutant, created by introducing two insertions (+ +) or two deletions (- -) in the same direction, disrupts the reading frame, resulting in a mutant phenotype.

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    What happens when you combine an insertion (+) and a deletion (-) in the same gene?

    Adding an insertion (+) and a deletion (-) in the same gene creates a pseudo-wild type, restoring the reading frame and resulting in a wild-type phenotype. This confirms the frameshift nature of insertions and deletions.

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    What did Crick's experiments with frameshift mutations demonstrate?

    Crick's experiments with frameshift mutations in bacteriophage T4 demonstrated that the genetic code is not overlapping and is read in groups of three bases. This is because adding or removing a single base resulted in a frameshift mutation, affecting the entire sequence downstream of the mutation.

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    How do wild-type bacteriophage plaques and rII mutant plaques differ?

    Wild-type bacteriophage plaques appear as normal-sized, circular areas of cleared bacteria on a petri dish, while rII mutant plaques are distinctive "large plaques" due to mutations in the rII gene.

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    What is the model system used in Crick's experiments?

    Bacteriophage T4 infects Escherichia coli, a common bacterium.

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    What role does recombination play in bacteriophage research?

    Recombination in bacteriophage T4 allowed researchers to bring together different mutations, resulting in recombinants with different combinations of mutations.

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    What is the minimum code word size for an amino acid?

    The minimum code word size for an amino acid is three nucleotides because 20 amino acids need at least 64 possible combinations, which can be achieved with 3 nucleotides (4^3 = 64).

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    What are ribosomes?

    Ribosomes are complexes of protein and RNA that function in protein synthesis. They read the genetic code in mRNA, using it to assemble amino acids into polypeptide chains. Think of them as tiny cellular factories that build proteins.

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    What is ribosomal RNA (rRNA)?

    rRNA, or ribosomal RNA, is a key component of ribosomes. It provides the structural framework for the ribosome and helps it bind to mRNA and guide the correct tRNA molecules during protein synthesis.

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    What are the three steps of translation?

    The three steps of translation are initiation, elongation, and termination. Initiation involves the assembly of the translation machinery, elongation extends the polypeptide chain by adding amino acids, and termination marks the end of protein synthesis.

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    How is the genetic code translated?

    The genetic code is translated by aminoacyl-tRNA synthetases and tRNAs. Each synthetase couples a specific amino acid to its corresponding tRNA.

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    What is wobble in tRNA?

    tRNA molecules can tolerate a mismatch at the third position of the codon, known as wobble. This allows some tRNAs to recognize multiple codons.

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    What is the role of tRNA in translation?

    tRNA is the key to deciphering the codons in mRNA. Each tRNA molecule carries a specific amino acid and recognizes a particular codon sequence, ensuring the correct amino acid is added to the polypeptide chain during translation.

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    What is the role of ribosomes in translation?

    The ribosomes read the mRNA sequence and use this information to assemble amino acids into a polypeptide chain. Imagine them as the protein-building factories of the cell.

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    Study Notes

    Learning Outcomes

    • Students will demonstrate a strong understanding of nucleic acid structure.
    • Students will grasp the structural organization of eukaryotic chromosomes.

    Key Point

    • Genetic information needs to be stable for storage, but readily accessible for cellular processes.

    What is Genetics?

    • The study of gene structure, function, genetic variation, and heredity in organisms.

    Grand Challenges

    • What are some of the biggest problems facing society? (This is a prompt, not information to be studied)

    How do we know what DNA is?

    • Friedrich Miescher (1868) isolated "nuclein" from human pus, later named nucleic acid.
    • It has high molecular weight and is acidic.

    How do we know genetic information is in DNA?

    • Avery, MacLeod, and McCarty (1944) performed experiments on Streptococcus pneumoniae using S-strain and R-strain bacteria.

    • They discovered that extracting the disease-causing S strain created a "transforming principle" whereby the harmless R-strain became pathogenic.

    • The isolating and analyzing process confirmed that DNA was the genetic material.

    • Alfred Hershey and Martha Chase (1953) used bacteriophages (viruses that infect bacteria) to demonstrate that DNA, not protein, is the genetic material passed to the following progeny.

    Requirements for Genetic Material

    • Stable over time.
    • Able to be faithfully replicated.
    • Able to direct the expression of traits [encoding protein sequences].
    • Capable of controlled changes (evolution).

    Structure of DNA

    • DNA has a double helix structure.
    • Rosalind Franklin used X-ray crystallography to study DNA structure.
    • Watson and Crick (1953) proposed a model of the DNA double helix, highlighting how complementary base pairs (adenine with thymine, guanine with cytosine) hold the two strands together.

    DNA is a double helix...

    • A double helix is made of two polynucleotide strands running antiparallel.
    • Dimensions: 2nm diameter, 0.34nm spacing between base pairs, 3.4nm for each full turn.
    • The sugar-phosphate backbones are on the outside, and the bases on the inside.

    ...made up of repeating units

    • A nucleotide consists of a sugar, a base, and a phosphate group.
    • The sugar is either ribose or deoxyribose, depending on the type of nucleic acid.
    • There are 4 possible bases in DNA: adenine, thymine, guanine, and cytosine.

    DNA is strand is a linear polymer of repeating units

    • A phosphodiester bond joins adjacent nucleotides in a strand.
    • Each nucleotide has a 5' and a 3' end, giving DNA directionality.
    • The 5' end of one strand is opposite the 3' end of the other, forming an antiparallel structure.

    DNA Is Held Together by Base Pairs

    • DNA strands are bound together by hydrogen bonds between complementary base pairs. (Adenine with Thymine, Guanine with Cytosine).

    Complementary base pairing

    • Base pairs have planar structures.
    • A large purine base always pairs with a smaller pyrimidine base.
    • Adenine pairs with thymine (2 hydrogen bonds).
    • Guanine pairs with cytosine (3 hydrogen bonds).
    • DNA can be denatured by applying heat.

    Complementary Base Pairing - Further Details

    • The major and minor grooves in the double helix provide access points for proteins to interact with the DNA.

    The structure of DNA provides the mechanism for heredity

    • DNA's base sequence is a digital code.
    • This code is easily stored and analyzed by computers.

    So what is a Genome?

    • The entire genetic material (DNA) of an organism or an organelle (such as mitochondria or chloroplasts).
    • Human nuclear genome (~3.0 x 10⁹ base pairs).
    • Human mitochondrial genome (~1.5 x 10⁴ base pairs).

    How is the genome organized?

    • The nuclear genetic material is organized into discrete units called chromosomes.

    Difference between chromosomes and chromatids

    • Homologous chromosomes are paired chromosomes that carry the same genes at the same locations.
    • Sister chromatids are duplicated copies of a chromosome, joined together at the centromere.

    Difference between chromosomes and chromatids / Mitosis

    • Interphase describes the phase before mitosis when DNA replication takes place.
    • Prophase is the first stage of mitosis where the replicated chromosomes condense.
    • Metaphase are the condensed chromosomes lined up at the center of the cell.
    • Anaphase is the stage when separated sister chromatids move to opposite poles of the cell.
    • Telophase is the stage after separation, where the newly formed nuclei are enclosed in a membrane.

    Human Karyotype

    • A visual representation of an organism's chromosomes. Different chromosomes have different banding patterns. Individual chromosomes, like chromosome 3, are clearly visible.

    Chromosome Structure

    • DNA is a long strand of nucleotides.
    • Each human cell has approximately 6 x 10⁹ base pairs.
    • DNA is extremely long (2 meters).
    • The cell nucleus is relatively small (typically less than 1/10 the thickness of a human hair).

    How is DNA packaged?

    • DNA wraps around proteins called histones.
    • These DNA-histone complexes form nucleosomes.
    • Nucleosomes further condense into chromatin fibers.
    • The chromatin fibers then fold into loops.
    • Scaffold proteins further condense the chromatin into the condensed structure of a chromosome.

    Two types of chromatin

    • Euchromatin: less compact DNA, contains genes that are frequently expressed.
    • Heterochromatin: more compact DNA, contains genes that are not transcribed.

    Practice Question:

    • The base sequence of the complementary strand of DNA is determined by base pairing (adenine pairs with thymine, and guanine pairs with cytosine).

    How can we use all this information – Grand Challenges

    • Synthetic biology designs and constructs new biological parts, devices, and systems

    Application of Synthetic Biology: Artemisinin production

    • Artemisinin is a valuable antimalaria drug derived from sweet wormwood (Artemisia annua).
    • Traditional medicine practitioners have used artemisinin for centuries.
    • Modern techniques have explored how to synthesize artemisinin in yeast to improve yield and efficiency. Li Shizhen provided a prescription method, and Tu Youyou won a Nobel Prize for discovering the active compound in the 1960s/70s.

    This module

    • This module covers molecular biology, techniques, and historical context, from DNA structure to synthetic biology, gene therapy, and population genetics.

    Aims for this session

    • This session explores genetics and introduces DNA and chromosome structure.

    Support Reading

    • iGenetics (2014), chapter 2 (pages 39-52).
    • Essential Cell Biology (2019), chapter 5 (pages 173-184).

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    Related Documents

    Description

    Test your knowledge on chromatin structure, histone proteins, and the fundamentals of DNA's role as genetic material. This quiz covers key concepts related to histones, nucleosomes, and pivotal discoveries in molecular biology. Perfect for students studying cellular biology and genetics.

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