Microscopy Techniques Overview
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Questions and Answers

Which microscopy technique creates a pseudo-3D effect by using polarized light?

  • Phase Contrast Microscopy
  • Electron Microscopy
  • Fluorescence Microscopy
  • Differential Interference Contrast (DIC) Microscopy (correct)
  • Stains improve contrast in live cell imaging.

    False (B)

    What is the primary method used to enhance contrast in conventional bright field microscopy?

    Illuminating the specimen with white light

    In differential interference contrast optics, the interference between two closely spaced beams generates __________ when the refractive index changes.

    <p>contrast</p> Signup and view all the answers

    Match each microscopy technique with its characteristic:

    <p>Fluorescence Microscopy = Uses fluorescent dyes to label and visualize specimens Electron Microscopy = Utilizes a beam of electrons for high-resolution imaging Confocal Microscopy = Uses a laser and pinhole to eliminate out-of-focus light Super-resolution Techniques = Achieves resolutions beyond the diffraction limit of light</p> Signup and view all the answers

    What thickness are typical sections when using a microtome for light microscopy?

    <p>1-20 μm thick (A)</p> Signup and view all the answers

    Optical techniques can improve contrast for both fixed and live cells.

    <p>True (A)</p> Signup and view all the answers

    Name one advantage of using phase contrast microscopy over conventional bright field microscopy.

    <p>It enhances visibility of cellular structures by converting refractive index differences into light intensity differences.</p> Signup and view all the answers

    What is the typical maximum resolution range for Electron Microscopy instruments?

    <p>3 nm to 20 nm (A)</p> Signup and view all the answers

    Freeze-fracture EM is used primarily to determine the external structure of a cell.

    <p>False (B)</p> Signup and view all the answers

    What method is used to remove water from tissues before examining them with Conventional SEM?

    <p>critical point drying</p> Signup and view all the answers

    In Atomic Force Microscopy, the probe is a tiny moveable __________ that moves over the surface.

    <p>cantilever</p> Signup and view all the answers

    Match the microscopy technique with its primary application:

    <p>Conventional SEM = Surface imaging of fixed tissues Cryo EM = High-resolution molecular structure analysis Atomic Force Microscopy = Surface topology analysis Freeze-fracture EM = Internal structure visualization</p> Signup and view all the answers

    Which heavy metal is commonly used to coat surfaces in Conventional SEM to enhance conductivity?

    <p>Gold-palladium (B)</p> Signup and view all the answers

    Cryo EM uses high doses of electrons for imaging samples.

    <p>False (B)</p> Signup and view all the answers

    What type of samples are ideally examined with Atomic Force Microscopy?

    <p>Biofilms or macromolecules in solution or in a membrane</p> Signup and view all the answers

    What is the primary limitation of Scanning Electron Microscopy (SEM) compared to Transmission Electron Microscopy (TEM)?

    <p>SEM requires thicker specimens than TEM. (D)</p> Signup and view all the answers

    Transmission Electron Microscopy (TEM) can achieve magnification up to 1,000,000 times.

    <p>True (A)</p> Signup and view all the answers

    What is the purpose of using immunogold labeling in electron microscopy?

    <p>To localize specific macromolecules by using gold particles attached to antibodies.</p> Signup and view all the answers

    The technique that uses heavy metal salts to darken the background while contrasting with biological particles is called ___________ staining.

    <p>negative</p> Signup and view all the answers

    Match the imaging methods with their characteristics:

    <p>Transmission Electron Microscope (TEM) = Focuses on internal structures Scanning Electron Microscope (SEM) = Captures surface details in 3D Ultrastructure Imaging = Involves high-resolution cellular components Negative Staining = Enhances contrast of particles against dark backgrounds</p> Signup and view all the answers

    Which of the following macromolecules can be visualized using negative staining?

    <p>Viruses (B)</p> Signup and view all the answers

    Ultrastructure of a cell is not visible using Transmission Electron Microscopy (TEM).

    <p>False (B)</p> Signup and view all the answers

    Name one fixative used in preparing tissue sections for Transmission Electron Microscopy.

    <p>Osmium tetroxide</p> Signup and view all the answers

    Flashcards

    Transmission electron microscope (TEM)

    A microscope that uses a beam of electrons to create highly magnified images of very thin specimens.

    Specimen preparation for TEM

    Involves ultra-thin sectioning and using heavy metal salts to stain the tissue, increasing electron density of specific features. This helps generate detailed images.

    Immunogold labeling

    A technique used to localize specific macromolecules (proteins, etc.) in a sample by tagging them with antibodies attached to gold particles.

    Negative Staining

    A technique to visualize small particles or macromolecules by applying heavy metal salts to the sample. The particles appear as lighter regions against the dark background.

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    Scanning electron microscope (SEM)

    A microscope that creates images of the surface of a sample by scanning it with a beam of electrons.

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    Electron Density

    Areas of a sample that appear darker in an electron microscope image. Caused by the presence of heavy metal salts that absorb electrons.

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    Ultra-thin sections

    Extremely thin slices of biological samples.

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    Osmium tetroxide

    A chemical fixative that reacts with double bonds, particularly in lipids, preserving structure and enhancing the staining process.

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    SEM sample prep

    Tissue fixation with glutaraldehyde (proteins) and OsO4 (membranes), then critical point drying to remove water, followed by heavy metal coating for conductivity.

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    Freeze-fracture EM

    Rapidly freezing a sample and splitting it with a glass knife to expose internal cell surfaces, then coating with platinum-carbon for visualization.

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    Cryo-EM

    Rapidly freezing a sample and imaging it using a low dose of electrons at high voltage, for atomic resolution.

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    Atomic Force Microscopy (AFM)

    Scanning a surface with a tiny cantilever (beam), measuring surface deflections to create images of surface topology, can also manipulate molecules.

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    AFM sample type

    Suitable for studying surface topology of biofilms or macromolecules in solution or a membrane.

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    AFM working principle

    A tiny cantilever probe moves over the surface, and tiny deflections are recorded creating a surface image. It can also manipulate single molecules.

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    SEM resolution

    Maximum resolution between 3 nm and 20 nm, varying with the specific instrument used.

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    Microscopy advancements

    New methods are continuously developed to improve microscopy techniques, e.g., new visualization.

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    Tissue Sectioning

    The process of cutting a tissue block into thin slices (sections) for microscopy.

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    Embedding

    A process where tissue is placed in a solid medium (like wax or plastic) to create a block for easier sectioning.

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    Microtome

    A tool used to section tissues into very thin slices.

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    Section thickness

    The controlled thickness of tissue slices, typically 1-20 μm, for optimal viewing under a microscope.

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    Fixation

    Preserving tissue to prevent decay and maintain structural integrity before sectioning.

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    Dehydration

    Removing water from the tissue to prepare it for embedding.

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    Phase Contrast Microscopy

    A microscopy technique that amplifies differences in the refractive index in different parts of a sample, enhancing contrast.

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    Differential Interference Contrast (DIC) Microscopy

    A microscopy technique that creates a pseudo-3D effect by amplifying differences in the refractive index in a sample.

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    Study Notes

    Microscopy Techniques

    • Microscopy is used to visualize structures at various scales, from atoms to cells and tissues.
    • Light microscopy provides low-resolution images but is useful for viewing whole cells and organelles.
    • Electron microscopy offers high resolution, visualizing subcellular structures and macromolecules.
    • Different types of electron microscopy exist, including transmission electron microscopy (TEM) for visualizing internal structures and scanning electron microscopy (SEM) for visualizing surfaces.
    • Atomic force microscopy (AFM) generates images of surfaces, biofilms, and molecules in solution.
    • Newer super-resolution confocal microscopes overcome the 0.2 µm resolution limit of conventional light microscopes.
    • Fluorescence microscopy uses fluorescent dyes or antibodies to visualize specific molecules within cells.
    • Immunofluorescence staining enhances contrast using antibodies linked to fluorescent labels.
    • Fluorescence in situ hybridization (FISH) localizes specific DNA or RNA sequences within cells.
    • Proteins can be tagged in living cells using green fluorescent protein (GFP), enabling researchers to track their location.
    • Combining spectral variants of GFP and RFP provides simultaneous visualization of multiple proteins.
    • Confocal microscopy uses a laser to illuminate and detect light from the sample, creating sharper images by reducing out-of-focus light. Image data are assembled from optical sections.

    Contrast Techniques

    • Various techniques enhance contrast in microscopy, such as staining, phase contrast, and differential interference contrast (DIC).
    • Different staining methods generate contrast by coloring specific structures, improving visibility.
    • Phase contrast and DIC are optical techniques that use different refractive indices to distinguish varying density areas inside cells.
    • Negative staining darkens the background around samples, making particles or molecules stand out.

    Preparing Specimens for Microscopy

    • Preparing specimens involves a combination of steps such as fixation, dehydration, and embedding to preserve cells and tissues.
    • Fixatives like formaldehyde and glutaraldehyde are used to preserve cellular structure by immobilizing proteins and structures.
    • Dehydration removes water from specimens, allowing them to be infiltrated with embedding media.
    • Embedding media, such as wax or plastic, surround the specimen to create a rigid block, aiding in sectioning.
    • Sectioning with a microtome generates thin slices of specimens.
    • Sections are mounted on microscope slides followed by staining to generate contrast.

    Image Resolution

    • Magnification increases the size of an image, but resolution is the ability to distinguish two separate points in an image.
    • Magnification without sufficient resolution can lead to empty magnification, without improving clarity.
    • The resolution of a light microscope is limited by the wavelength of light, typically to about 0.2 µm.
    • Electron microscopes, using electrons instead of light, offer significantly higher resolution, allowing visualization of structures in the nanometer range (0.2 nm).

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    Microscopy Lecture 2 2024 PDF

    Description

    Explore various microscopy techniques that enable visualization of structures at different scales, from atoms to cells. This quiz covers light microscopy, electron microscopy, and advanced methods like atomic force microscopy and fluorescence microscopy. Test your knowledge on how these techniques enhance our understanding of biological materials.

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