Microscopy and Cell Types
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You have discovered a new strain of bacteria and are trying to understand its morphology and structure. The first thing you want to do is to produce an image of the general structure of the new bacteria and obtain an idea of its surface roughness for future applications. What form of microscopy would you use?

  • TEM
  • SEM (correct)
  • Phase contrast microscopy
  • Fluorescence microscopy
  • In order to identify the amount of a protein in a cell, you stain the cells with an identifying dye. Then, you are tasked to look under a microscope and quantify the amount of the protein present in the cells. What form of microscopy would be the most beneficial to use for this process?

  • Dark field microscopy
  • Phase contrast microscopy
  • Bright field microscopy
  • Fluorescence microscopy (correct)
  • Which cell type is able to have phospholipid monolayers?

  • Archaea (correct)
  • Eukarya
  • Bacteria
  • What lipid tail type do archaea have?

    <p>Isoprene</p> Signup and view all the answers

    You are conducting an experiment to look at the single stranded DNA of a eukaryotic cell during replication. In order to do this, you introduce Aphidicolin, which inhibits DNA polymerase. However, when you test the DNA composition, you find that there are no single-strands of DNA. Assuming SSBs are performing properly, which protein involved in DNA replication is most likely inhibited?

    <p>DNA helicase</p> Signup and view all the answers

    What protein is needed to connect the Okazaki fragments?

    <p>DNA ligase</p> Signup and view all the answers

    Cyanobacteria are placed in a controlled environment where the amount of N2 in the air is significantly reduced. Which process will be most affected by this?

    <p>Nitrogen fixation</p> Signup and view all the answers

    In what condition does the trp operon become active?

    <p>When tryptophan levels are low</p> Signup and view all the answers

    Cleaning surfaces :

    <p>Ultraviolet Radiation</p> Signup and view all the answers

    Sterilizing culture media :

    <p>Autoclaving (heat sterilization)</p> Signup and view all the answers

    Air purification :

    <p>Filtration</p> Signup and view all the answers

    Laboratory glassware :

    <p>Autoclaving (heat sterilization)</p> Signup and view all the answers

    Halobacterium salinarum is an archaeon that is a type of extremophile. This archaeon cannot survive in freshwater ecosystems. Based on this information, which of the following types of extremophile is Halobacterium salinarum?

    <p>Halophile</p> Signup and view all the answers

    Horizontal gene transfer is a mechanism by which organisms transfer genetic information to each other that are not related by parent/offspring. Lysogenic viruses facilitate horizontal gene transfer in a process known as

    <p>Transduction</p> Signup and view all the answers

    Polymerase Chain Reaction or PCR is a technique that is utilized in comparison of nucleotide sequences. Assume we run a PCR experiment. However instead of using the Taq polymerase, instead we use DNA polymerase III found in humans. What would be the following outcome of the PCR?

    <p>The PCR produces copies of the incorrect sequences</p> Signup and view all the answers

    16S amplicon sequencing is a form of sequencing that targets hypervariable regions of the 16S gene. Which of the following would it be most necessary to use 16S amplicon sequencing to differentiate the organisms?

    <p>Escherichia coli vs. Salmonella enterica</p> Signup and view all the answers

    Match each of the following community interactions to its correct definition:

    <p>Mutualism = Two or more species benefit from interaction Commensalism = One organism benefits at the expense of the other Predation = One organism benefits while the other is neither benefited or harmed Parasitism = One organism kills and eats the other organism</p> Signup and view all the answers

    Which of the following bacteria most closely relates mitochondrial structure?

    <p>Rickettsia prowazekii</p> Signup and view all the answers

    Which of the following are the inputs to oxygenic photosynthesis?

    <p>Carbon dioxide and water</p> Signup and view all the answers

    Where does the calvin cycle take place?

    <p>Stroma</p> Signup and view all the answers

    Which of the following are found on fungal cell walls? Select all that apply.

    <p>Mannoproteins</p> Signup and view all the answers

    Which of the following correctly matches the part of a fluorescent microscope to its function?

    <p>All of the above</p> Signup and view all the answers

    You have recently discovered a new compound with antibiotic properties, which you name Ezrium. After applying Ezrium to a sample of bacteria, you notice the presence of breakages within the cells' chromosomal DNA, and an increased expression of proteins involved in the bacterial SOS response. Based on this observation, which antibiotic class would Ezrium most likely belong to?

    <p>Fluoroquinolones</p> Signup and view all the answers

    Which of the following statements pertaining to archaeal cell structure are false? Select all that apply.

    <p>Clockwise rotation of archaeal flagellum pushes the cell backward, while counterclockwise rotation moves the cell forward</p> Signup and view all the answers

    The image below depicts a bacterial growth curve. Which answer choice correctly matches the letters to their corresponding phase?

    <p>A - Lag; B - Log; C - Stationary; D - Death</p> Signup and view all the answers

    Ribosomes in bacteria consist of two subunits, 30S and 50S.

    <p>True</p> Signup and view all the answers

    Leuconostoc mesenteroides produce sauerkraut via the mechanism of cellular respiration.

    <p>False</p> Signup and view all the answers

    The efficiency of photosynthesis in biofuel production is limited by the light saturation point.

    <p>True</p> Signup and view all the answers

    Transduction is how bacteria replicate their DNA.

    <p>False</p> Signup and view all the answers

    Viral DNA in bacterial genome can play a role in bacterial evolution.

    <p>True</p> Signup and view all the answers

    All bacteria have capsules.

    <p>False</p> Signup and view all the answers

    Endotoxins are lipopolysaccharides that are liberated only through bacterial cell lysis or death.

    <p>True</p> Signup and view all the answers

    The trp operon is an example of an inducible operon.

    <p>False</p> Signup and view all the answers

    In the absence of lactose, the lacI gene is continuously transcribed.

    <p>True</p> Signup and view all the answers

    Telomerase resolves the end replication problem within prokaryotes by constructing telomeres at the end of each chromosome.

    <p>False</p> Signup and view all the answers

    Gas vesicles are impermeable to liquid water.

    <p>True</p> Signup and view all the answers

    Endospores tend to be less resilient than microbial cysts.

    <p>False</p> Signup and view all the answers

    The endolysin Cpl-1 is responsible for degradation of the bacterial cell wall in Streptococcus pneumoniae. A phage which contains this endolysin would be called a _____ phage.

    <p>lytic</p> Signup and view all the answers

    Enfuvirtide is a fusion inhibitor drug that prevents HIV-1 from entering host cells by binding to _____.

    <p>the gp41 protein</p> Signup and view all the answers

    Individuals that are deficient in _____ are often highly resistant to HIV.

    <p>CCR5</p> Signup and view all the answers

    _____ is a glycoprotein found on the surface of HIV-1 and binds to the _____ receptor to begin host cell entry.

    <p>gp120, CD4</p> Signup and view all the answers

    Reverse transcriptase contains three enzymatic activities: _____, _____, and _____.

    <p>DNA polymerase, RNAse H, ribonuclease</p> Signup and view all the answers

    The Escherichia Virus lambda is a really interesting example of a way that a phage can switch between the lysogenic and lytic cycle. The method which controls it is through the use of an operon. Fill in the correct cycle for the given protein (ie when the repressor protein is bound, what cycle is it in)

    <p>a) repressor cI protein : lysogenic cycle b) Cro repressor protein : lytic cycle</p> Signup and view all the answers

    Given the images of cells under a microscope, provide the type of microscopy shown. Refer to images 2-7 on the image sheet: [6 points, 1 point per image]

    <p>Image 2: Dark field microscopy Image 3: Phase contrast microscopy Image 4: Bright field microscopy Image 5: Confocal microscopy Image 6: Fluorescence microscopy Image 7: Transmission electron microscopy</p> Signup and view all the answers

    For 44-47, match the following names with the bacterial cell shape they represent. Fill in the blank with the correct image number. Refer to images 8-11 on the image sheet. [1 point each]

    <p>Neisseriae = Image 9 Tetrads = Image 10 Spirochetes = Image 8 Streptococci = Image 11</p> Signup and view all the answers

    There are several structural characteristics that bacteria, eukarya, and archaea share. List 3.

    <ol> <li>Ribosomes</li> <li>Plasma membrane</li> <li>DNA</li> </ol> Signup and view all the answers

    Outline the three stages of translation in bacteria. Provide the name of each stage and provide details about the components and process of each.

    <p>The three stages of translation in bacteria are:</p> <ol> <li> <p>Initiation: This stage involves the assembly of the ribosome, mRNA, and the initiator tRNA carrying the methionine amino acid. The ribosome binds to the mRNA at the Shine-Dalgarno sequence, upstream of the start codon. This is followed by the binding of the initiator tRNA, which enters the P-site of the ribosome. The initiator tRNA is followed by the binding of the large subunit of the ribosome, forming the functional translation complex.</p> </li> <li> <p>Elongation: In this stage, amino acids are added one by one to the growing polypeptide chain. The ribosome moves along the mRNA, reading each codon. For each codon, the corresponding tRNA carrying the appropriate amino acid enters the A-site (aminoacyl site). The tRNA carries the appropriate amino acid that matches the codon. Peptidyl transferase, an enzyme within the ribosome, then creates a peptide bond between the new amino acid and the growing polypeptide chain, transferring it from the P-site to the A-site. The ribosome advances one codon. The tRNA in the E-site (exit site) departs. This process continues until the stop codon is reached.</p> </li> <li> <p>Termination: When the ribosome encounters a stop codon, the translation process is terminated. Release factors bind to the stop codon, causing the polypeptide chain to be released from the ribosome. The mRNA and ribosomal subunits also dissociate. The newly synthesized polypeptide chain is then folded into its proper three-dimensional structure, becoming a functional protein.</p> </li> </ol> Signup and view all the answers

    You are working to sterilize your materials for your next experiment, and you decide to use autoclaving (heat sterilization) to do so. However, when you run your experiments, you find that bacteria has contaminated your cells. Assuming all other steps of the experiment were completed under sterile conditions, what structure is most likely present in the bacteria? Describe three characteristics of this structure that contribute to the high heat resistance of the bacteria.

    <p>The structure most likely present in the bacteria is an endospore. Endospores are highly resistant structures produced by certain bacteria under harsh conditions, like extreme heat, desiccation, or radiation. Here are three characteristics that contribute to their high heat resistance:</p> <ol> <li>Thick spore coat: The endospore is surrounded by a thick, multi-layered protein coat, which provides a physical barrier against heat, chemicals, and radiation.</li> <li>Dehydrated core: The endospore's core is dehydrated, containing very low water content. This dehydration significantly minimises the impact of heat on cellular components.</li> <li>Dipicolinic acid: Endospores contain high levels of dipicolinic acid. This compound contributes to heat resistance by stabilizing DNA, preventing damage from heat and other stressors.</li> </ol> Signup and view all the answers

    Describe a real-world example of commensalism, including the species involved and how the relationship functions.

    <p>An example of commensalism is the relationship between the clownfish and the sea anemone. The clownfish lives among the tentacles of the sea anemone, which provides protection from predators. The sea anemone's stinging tentacles are fatal to most fish, but not to the clownfish, which has a protective mucus layer. The clownfish benefits from the protection offered by the sea anemone, while the sea anemone is neither harmed nor benefited by the clownfish. The clownfish might also help to keep the sea anemone clean by eating parasites. This mutually beneficial relationship, where one organism benefits without harming the other, is an example of commensalism.</p> Signup and view all the answers

    Study Notes

    Microscopy

    • Microscopy techniques are used to visualize the morphology and structure of specimens.
    • TEM (Transmission Electron Microscopy): used to obtain high-resolution images of the internal structure of specimens.
    • SEM (Scanning Electron Microscopy): generates three-dimensional images of surface features.
    • Fluorescence Microscopy: utilizes fluorescent dyes to visualize specific molecules or structures within a specimen.
    • Phase Contrast Microscopy: enhances the contrast of transparent specimens, allowing details to be more easily seen.
    • Bright Field Microscopy: projects light through the specimen, revealing structures that differ in transparency.
    • Dark Field Microscopy: creates a brighter image of a specimen against a dark background

    Cell Types and Structures

    • Bacteria: have phospholipid bilayers
    • Archaea: have unique lipid structures called phospholipid monolayers
    • Eukarya: have phospholipid bilayers

    Bacterial Structures and Processes

    • Endospores: highly resistant structures formed by bacteria, can endure harsh conditions
    • Gas Vesicles: aid in buoyancy and flotation for some bacteria species

    Microbial Communities and Interactions

    • Mutualism: both species benefit
    • Commensalism: one benefits, the other is unaffected
    • Predation: one species consumes another
    • Parasitism: one benefits at the expense of the other

    Microbiology Processes

    • DNA Replication: DNA Polymerase is responsible for joining Okazaki fragments during DNA replication.
    • Protein Synthesis: Involves three main Stages: Initiation, elongation, and termination. Components used Ribosomes, tRNA, mRNA, and amino acids.
    • Antibiotic Resistance Mechanisms: Bacteria use mechanisms such as the trp operon, which regulate how efficiently they use various energy sources.
    • Cell Wall Structure and Function: Bacterial cell walls contain peptidoglycan, a unique polymer in bacterial and archaeal cell walls
    • Nitrogen Fixation: Bacteria convert atmospheric nitrogen into ammonia in a process vital for plant nutrition.

    Scientific Methods

    • PCR Techniques Utilizing DNA polymerase III to replicate DNA strands in targeted ways to measure nucleotide and genomic sequences
    • Gram Stain: Differential staining technique that distinguishes between gram-positive and gram-negative bacteria based on differences in peptidoglycan layer structure.

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    Description

    This quiz covers various microscopy techniques such as TEM, SEM, and fluorescence microscopy, highlighting their applications in visualizing specimen structures. Additionally, it explores the types of cells including Bacteria, Archaea, and Eukarya, focusing on their unique characteristics and lipid structures. Test your knowledge on these essential topics in biology!

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