Microscope: Parts, Magnification, and Usage

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Questions and Answers

In the context of microscopy, if an objective lens with a numerical aperture (N.A.) of 1.4 is used with immersion oil (refractive index = 1.51), and assuming that the theoretical resolution limit is defined by Abbe's equation ($d = \frac{λ}{2NA}$), what is the smallest resolvable distance, $d$, using light with a wavelength ($λ$) of 550 nm?

  • Approximately 393 nm
  • Approximately 677 nm
  • Approximately 196 nm (correct)
  • Approximately 235 nm

Considering Köhler illumination, which of the following adjustments would MOST effectively correct for uneven illumination across the field of view while optimizing both resolution and contrast in a phase contrast microscope?

  • Inserting a neutral density filter into the light path to uniformly reduce the light intensity, thereby eliminating the perceived unevenness.
  • Adjusting the intensity of the light source until the uneven illumination is minimized, ensuring that the specimen is not overexposed.
  • Adjusting the condenser height to focus the field diaphragm image in the plane of the specimen, followed by centering the phase annulus to match the objective phase ring. (correct)
  • Removing the condenser altogether to eliminate any interference patterns that may be causing the uneven illumination.

If you are using a 100x oil immersion objective with a numerical aperture of 1.25 and an ocular lens with a magnification of 10x, what would be the TOTAL magnification:

  • 10,000x
  • 1,000x (correct)
  • 100x
  • 110x

In a fluorescence microscope, the Stokes shift is a critical parameter. If a fluorophore is excited with a wavelength of 488 nm and emits light at 525 nm, calculate the Stokes shift in terms of wavenumber ($cm^{-1}$), using the formula: Stokes Shift = $(\frac{1}{λ_{excitation}} - \frac{1}{λ_{emission}}) * 10^7$.

<p>Approximately 1456 $cm^{-1}$ (A)</p> Signup and view all the answers

What specific function does Xylene serve when preparing and using a microscope?

<p>It is used to clean and remove immersion oil from objective lenses after use, ensuring optimal performance and preventing damage. (A)</p> Signup and view all the answers

When conducting image deconvolution on a widefield microscopy image, which of the following factors has the MOST significant impact on the accuracy and resolution of the resulting deconvolved image?

<p>The precision and accuracy of the point spread function (PSF) used in the deconvolution algorithm. (B)</p> Signup and view all the answers

In the use of a stage micrometer and an ocular micrometer for calibrating microscopic measurements, if you observe that 20 divisions on the ocular micrometer align with 5 divisions on a stage micrometer, and each division on the stage micrometer is 0.01 mm, what is the size of one division on the ocular micrometer?

<p>0.0025 mm (D)</p> Signup and view all the answers

Considering the principles of phase contrast microscopy, what specific optical component is engineered to manipulate the phase relationships of light passing through and around the specimen, thereby enhancing contrast?

<p>A Zernike phase plate, which introduces a phase shift to the undiffracted light. (A)</p> Signup and view all the answers

Given the formula $(X)(OU) = (Y)(SU)$ where X is the divisions of the ocular micrometer (OM), subtended by divisions of the stage micrometer (SM), Y is the divisions of the stage micrometer (SM), subtended by the divisions of ocular micrometer (OM), SU is stage units (0.01 mm) and OU is the distance between divisions of the OM, what does the formula calculate?

<p>The formula is used to calibrate the ocular micrometer using the stage micrometer. (B)</p> Signup and view all the answers

What is the MOST critical function of immersion oil in high-resolution light microscopy, especially when using a 100x objective with a high numerical aperture?

<p>To minimize light scattering and refraction, thereby increasing the amount of light entering the objective lens and improving resolution. (B)</p> Signup and view all the answers

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Flashcards

What is a microscope?

Magnifies objects that are not seen by the naked eye using a system of lenses and sufficient illumination.

Ocular/Eyepiece

The part of the microscope you look into; contains lenses to increase magnification.

Draw tube

Cylindrical part where the eyepiece is inserted.

Body tube

Barrel that holds the lenses of the eyepiece and objectives.

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Coarse adjustment knob

Large wheel that moves the body tube to focus the specimen, used with low power.

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Fine adjustment knob

Smaller wheel for sharpest focus, moves the body tube slightly.

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Dust shield

Rounded metal that protects objectives from dust.

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Revolving nosepiece

Bottom of the body tube where objectives attach; rotates to change objectives.

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Objectives

Small tubes with lenses of different magnifications attached to the nosepiece.

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Stage

Flat area to place the slide.

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Study Notes

  • The microscope magnifies objects that cannot be seen by the naked eye.
  • It uses a system of lenses with sufficient magnification and resolving power.
  • Sufficient illumination helps distinguish small elements in a specimen.

Topic Learning Outcomes

  • Mastering the parts of a compound microscope and their functions
  • Explaining magnification and resolution principles in microscopy
  • Learning to use micrometers to measure microorganisms
  • Becoming familiar with the cellular structures of microorganism groups

Materials

  • Compound microscopes can be monocular or binocular.
  • The materials needed are, Ocular Micrometer, Stage Micrometer, immersion oil, cedarwood oil, lens paper, xylene and cotton.
  • Prepared slides contain Bacteria (Bacillus, Staphylococcus, Spirillum), Protozoans (Amoeba, Euglena, Paramecium), and Fungi (Aspergillus, Penicillium, Rhizopus, Saccharomyces).

Part of a Microscope

  • The ocular or eyepiece is where you look into the microscope, containing lenses to increase magnification, and inserted into the draw tube.
  • The draw tube is a cylindrical part where the eyepiece is inserted.
  • The body tube/barrel holds the eyepiece and objectives at the correct distance.
  • The coarse adjustment knob is a large wheel to moves the body tube significantly for initial focusing, used with low power objectives.
  • The fine adjustment knob is a smaller wheel that brings the specimen to its sharpest focus by moving the body tube slightly.
  • The dust shield protects the objectives from dust.
  • The revolving nosepiece is where objectives are attached rotates to change objectives.
  • Objectives are small tubes that contain varying magnification power, attached to the nosepiece.
  • The low power objective (LPO) is marked as 10x.
  • Scanning Objectives can be present (4x or 5x)
  • High power objectives (HPO) are typically marked 40x, 44x, or 45x.
  • Advanced microscopes may also have a 100x oil immersion objective.
  • The stage is the flat area where the slide is placed for examination.
  • A stage aperture allows light from the mirror to pass through.
  • Stage clips hold the slide in place.
  • The arm supports the body tube.
  • The mirror reflects light through the stage aperture, and is used to illuminate the specimen
  • Concave mirrors are used when a condenser is absent.
  • Flat mirrors are used if there is a condenser
  • Some microscopes use a lamp as a light source.
  • The condenser focuses light on the specimen.
  • The pillar is an upright bar that connects the base.
  • A diaphragm regulates the amount of light passing through the specimen, functioning as a rotating disk or iris.
  • The inclination joint allows tilting of the microscope.
  • The base is the horseshoe-shaped bottom that supports the microscope.

Microscope Objectives

  • Focal length (mm) is the distance from the lens center to the point where parallel rays come to a focus.
  • Numerical aperture (N.A.) measures the resolving power of an objective.
  • An objective with 0.25 N.A. can distinguish 25,000 lines per inch.
  • Working distance (mm) is the space between the specimen and the objective.

Magnification

  • The microscope should be plugged in, and the light switch must be on.
  • Place the prepared slide (Amoeba) on the stage, secured by the slide holder.
  • Position the specimen area over the stage aperture.
  • Looking through the eyepiece, raise the coarse knob until the image appears and focus as sharply as possible.
  • If the light is too much, control iris diaphragm for best contrast
  • Shift to the high-power objective (HPO). Adjust the fine knob to sharpen the image.
  • If the microscopic field is dark, control the iris diaphragm to increase the light intensity.
  • To retain focus, relax the eyes and keep them at a distance from the eyepiece with both eyes open.

Resolution

  • Focus a prepared slide of Bacillus subtilis under low power objective (LPO), choosing a very clear area for the bacteria
  • Shift to HPO and bring the bacteria into focus.
  • Shift to the oil immersion objective (OIO) and adjust with the fine knob for final focusing.
  • Rotate the revolving nosepiece and apply a small drop of immersion oil to the specimen above the stage aperture.
  • Return the OIO to its location. The front lens should be immersed in oil and close to the slide.
  • Look into the eyepiece, and adjust with fine knob for clearer focusing.
  • Use lens paper moistened with xyoil to blot the oil off after use.

Measurement of the Specimen

  • Use a microscope is provided with an ocular micrometer
  • Using the LPO, look into the eyepiece to ensure that the grid lines are upright
  • Place the stage micrometer on the stage and focus on its scale.
  • Arrange the stage micrometer so that the first division coincides with a division on the stage scale.
  • Look across the field for another line on the ocular micrometer coinciding with the stage scale
  • Count the divisions on the ocular micrometer subtended by the divisions on the stage micrometer to compute the ocular unit.
  • Repeat steps 1-5 above with HPO and OIO
  • Remove the stage micrometer and replace with a prepared slide.
  • Focus the specimen and line it up along the ocular micrometer.
  • Determine the specimen's dimension using the formula (X)(OU) = (Y)(SU)
Formula definitions
  • X = Divisions of the ocular micrometer (OM) subtended by stage micrometer (SM) divisions.
  • Y = Divisions of the stage micrometer (SM) subtended by ocular micrometer (OM) divisions.
  • SU = Stage units (0.01 mm)
  • OU = Distance between divisions of the OM

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