Microbiology and Microscopy Quiz

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Questions and Answers

What is the main purpose of applying stains during microscopy?

  • To prevent the specimen from drying out
  • To enhance the resolution of the specimen
  • To improve the magnification of the image
  • To visualize specific structures in the specimen (correct)

Which type of microscope is best suited for visualizing internal structures at high resolution?

  • Fluorescence Microscope
  • Transmission Electron Microscope (correct)
  • Compound Light Microscope
  • Phase-Contrast Microscope

Which of the following is NOT a property of Gram-negative bacteria cell walls?

  • Thick peptidoglycan layer (correct)
  • Outer membrane presence
  • Teichoic acids
  • Lipopolysaccharides (LPS)

When preparing a smear for microscopy, which step is NOT necessary?

<p>Applying a differential stain (B)</p> Signup and view all the answers

What type of microscope utilizes ultraviolet light to view fluorescently labeled structures?

<p>Fluorescence Microscope (A)</p> Signup and view all the answers

Which structure is directly associated with the movement of bacteria?

<p>Flagella (A)</p> Signup and view all the answers

Which statement about passive transport across membranes is false?

<p>It requires energy input (D)</p> Signup and view all the answers

Which of the following cell types contains a nucleus?

<p>Eukaryotic cells (C)</p> Signup and view all the answers

Which method is NOT classified as a physical method of microbial control?

<p>Phenolic agents (C)</p> Signup and view all the answers

What is the main purpose of antisepsis?

<p>To prevent infection on living tissue (D)</p> Signup and view all the answers

What defines the primary difference between Bacteria and Archaea?

<p>Bacteria possess peptidoglycan cell walls, whereas Archaea do not. (B)</p> Signup and view all the answers

Which of the following describes the lagging strand synthesis during DNA replication?

<p>Requires multiple RNA primers (C)</p> Signup and view all the answers

Which process directly leads to the synthesis of mRNA from a DNA template?

<p>Transcription (C)</p> Signup and view all the answers

Which of the following is NOT a characteristic of viruses?

<p>Can replicate independently of a host cell. (D)</p> Signup and view all the answers

Which method of disinfection utilizes physical means rather than chemical?

<p>UV radiation (D)</p> Signup and view all the answers

According to Koch's Postulates, which statement is incorrect?

<p>The pathogen must be able to be cultured in any medium. (D)</p> Signup and view all the answers

Which microbe group is primarily responsible for decomposing organic material?

<p>Fungi (A)</p> Signup and view all the answers

What role does ligase play in DNA replication?

<p>Joins Okazaki fragments together (C)</p> Signup and view all the answers

What was a key conclusion from Pasteur's S-neck Flask Experiment?

<p>Contamination occurs from airborne microbes rather than air itself. (A)</p> Signup and view all the answers

Which of the following best describes ionizing radiation?

<p>Effective in penetrating deep into materials (D)</p> Signup and view all the answers

In the hierarchy of biological classification, which level comes directly after Order?

<p>Family (C)</p> Signup and view all the answers

What is one main difference between prokaryotic and eukaryotic DNA replication?

<p>Eukaryotic DNA has multiple origins of replication (B)</p> Signup and view all the answers

What did proponents of spontaneous generation believe?

<p>Life can emerge from nonliving matter. (D)</p> Signup and view all the answers

Which type of microbe is classified as a unicellular eukaryote that often moves by pseudopods?

<p>Protozoa (D)</p> Signup and view all the answers

Which microbial control agent primarily causes leakage of cellular contents by altering membrane permeability?

<p>Quaternary ammonium compounds (D)</p> Signup and view all the answers

What is the Thermal Death Time (TDT)?

<p>The time to kill all microbes at a set temperature (D)</p> Signup and view all the answers

Which physical method of microbial control is most effective for sterilizing tools and media?

<p>Autoclaving at 121°C and 15 psi for 15 minutes (C)</p> Signup and view all the answers

What is the primary action of alcohols as microbial disinfectants?

<p>Dissolve lipids and denature proteins (D)</p> Signup and view all the answers

Which of the following describes the role of non-ionizing radiation in microbial control?

<p>It induces thymine dimers in DNA preventing replication (B)</p> Signup and view all the answers

Which characteristic defines a disinfectant as a phenolic compound?

<p>Disrupts membranes and denatures proteins (B)</p> Signup and view all the answers

What does the Decimal Reduction Time (D-value) indicate in microbial control?

<p>The duration to reduce a microbial population by 90% (B)</p> Signup and view all the answers

Which statement correctly describes the action of soaps and detergents in microbial control?

<p>They emulsify fats aiding in mechanical removal (D)</p> Signup and view all the answers

What is the primary mode of locomotion for Trypanosoma among protozoa?

<p>Flagella (D)</p> Signup and view all the answers

Which statement about gamma-proteobacteria is false?

<p>Pseudomonas aeruginosa is not pathogenic. (A)</p> Signup and view all the answers

Which process correctly describes the sexual reproduction in fungi?

<p>Plasmogamy followed by karyogamy (A)</p> Signup and view all the answers

Which of the following is a characteristic of archaea?

<p>Their membranes are composed of ether-linked lipids. (B)</p> Signup and view all the answers

What characteristic is not associated with viruses?

<p>Possess chitin-based cell walls (A)</p> Signup and view all the answers

In the lysogenic cycle of a virus, what happens once the virus integrates into the host genome?

<p>It remains dormant until triggered (B)</p> Signup and view all the answers

Which of these statements is true regarding spirochetes?

<p>They utilize axial filaments for movement. (B)</p> Signup and view all the answers

What is a primary function of Bacteroidetes in the human gut?

<p>They digest complex carbohydrates. (D)</p> Signup and view all the answers

Which of the following diseases is caused by a protozoan pathogen?

<p>Giardiasis (A)</p> Signup and view all the answers

Which of the following statements regarding fungal infections is true?

<p>Fungal infections can be systemic and range in severity (D)</p> Signup and view all the answers

Which type of fungi are responsible for forming spores?

<p>Aerial hyphae. (A)</p> Signup and view all the answers

What type of reproduction do some protozoa utilize involving the exchange of micronuclei?

<p>Conjugation (A)</p> Signup and view all the answers

Which organism is classified within the category of methanogens?

<p>Methanobrevibacter. (B)</p> Signup and view all the answers

Which characteristic is NOT associated with beta-proteobacteria?

<p>Being the most diverse class of bacteria. (C)</p> Signup and view all the answers

Which is not a characteristic of fungi?

<p>Photosynthesis as a primary mode of nutrition (A)</p> Signup and view all the answers

What type of hyphae absorb nutrients in fungi?

<p>Vegetative hyphae. (C)</p> Signup and view all the answers

Which type of microscope is best for enhancing contrast in transparent specimens without using stains?

<p>Phase-Contrast Microscope (D)</p> Signup and view all the answers

In a Gram stain, what color do Gram-positive bacteria appear after the staining process?

<p>Purple (B)</p> Signup and view all the answers

What is the primary structure responsible for the protective dormancy of certain bacteria under stress?

<p>Endospore (B)</p> Signup and view all the answers

Which of the following is a key feature differentiating Gram-negative bacteria from Gram-positive bacteria?

<p>Presence of an outer membrane (C)</p> Signup and view all the answers

What determines the resolution of a microscope?

<p>The numerical aperture of the lenses and the wavelength of light (B)</p> Signup and view all the answers

Which type of stain is used to differentiate between various cell types based on their structural differences?

<p>Differential Stain (B)</p> Signup and view all the answers

What is the function of the pili in prokaryotic cells?

<p>Adhesion to surfaces (C)</p> Signup and view all the answers

Which of the following organelles is unique to eukaryotic cells and not found in prokaryotic cells?

<p>Nucleus (D)</p> Signup and view all the answers

What describes the structure of a Gram-positive bacterial cell wall?

<p>Thick peptidoglycan layer with teichoic acids (C)</p> Signup and view all the answers

Which component is responsible for stabilizing the transition state in enzyme reactions?

<p>Holoenzyme (C)</p> Signup and view all the answers

In which cellular location does glycolysis occur?

<p>Cytoplasm (D)</p> Signup and view all the answers

What distinguishes oxidative phosphorylation from substrate-level phosphorylation?

<p>It involves electron transport and chemiosmosis (C)</p> Signup and view all the answers

Which of the following statements about fermentation is true?

<p>It regenerates NAD+ for glycolysis (D)</p> Signup and view all the answers

Which process is NOT associated with ATP production in photosynthetic organisms?

<p>Calvin cycle (B)</p> Signup and view all the answers

What role do pili serve for bacteria?

<p>Facilitate attachment to surfaces (D)</p> Signup and view all the answers

What factor does NOT affect enzyme activity?

<p>Genetic makeup of the substrate (D)</p> Signup and view all the answers

What is the primary role of ligase during DNA replication?

<p>Joining Okazaki fragments (C)</p> Signup and view all the answers

Which method of microbial control is least effective at eliminating spores?

<p>Boiling water (A)</p> Signup and view all the answers

What distinguishes ionizing radiation from non-ionizing radiation in microbial control?

<p>Ionizing radiation alters microbial DNA, while non-ionizing radiation does not (A)</p> Signup and view all the answers

In eukaryotic DNA replication, what role do telomeres serve?

<p>Protecting chromosome ends (C)</p> Signup and view all the answers

What is the primary function of an inducible operon in a cell?

<p>Activated by the presence of a substrate (B)</p> Signup and view all the answers

What is a common method used to achieve sanitization in food preparation environments?

<p>Hot water washing of utensils (C)</p> Signup and view all the answers

Which of the following methods is primarily utilized for sterilizing laboratory tools that cannot be exposed to moisture?

<p>Dry heat sterilization (C)</p> Signup and view all the answers

Which mutation type is most likely to result in a completely altered protein sequence?

<p>Frameshift mutation (C)</p> Signup and view all the answers

What is the primary mechanism through which antibiotics like Penicillin exert their effects?

<p>Inhibiting cell wall synthesis (A)</p> Signup and view all the answers

Which process involves the conversion of mRNA into polypeptides?

<p>Translation (C)</p> Signup and view all the answers

Which chemical method is considered a sterilant and useful for gaseous sterilization?

<p>Ethylene oxide (C)</p> Signup and view all the answers

Which organism is primarily responsible for nitrogen fixation in legumes?

<p>Rhizobium (D)</p> Signup and view all the answers

Which of the following best describes the relationship between broad-spectrum and narrow-spectrum antibiotics?

<p>Narrow-spectrum targets a limited variety of bacteria, while broad-spectrum targets a wide range (C)</p> Signup and view all the answers

Which of the following terms is defined as the uptake of foreign DNA from the environment by a bacterium?

<p>Transformation (D)</p> Signup and view all the answers

What is a characteristic feature of archaea compared to bacteria?

<p>Distinct ribosomal RNA sequences (A)</p> Signup and view all the answers

Which type of microbial transfer involves direct DNA transfer via a specialized structure?

<p>Conjugation (B)</p> Signup and view all the answers

What distinguishes the sexual reproduction process in fungi from asexual reproduction?

<p>Involvement of plasmogamy and karyogamy (B)</p> Signup and view all the answers

Which mode of locomotion is utilized by Paramecium?

<p>Cilia (B)</p> Signup and view all the answers

What is the primary difference in the composition of viral structure compared to cellular organisms?

<p>Absence of a cellular structure (A)</p> Signup and view all the answers

Which statement best describes the effects of the lysogenic cycle on host cells?

<p>Integration of viral genome into host genome (C)</p> Signup and view all the answers

Which characteristic is specific to Plasmodium species and their pathogenicity?

<p>Infection of liver cells and erythrocytes (B)</p> Signup and view all the answers

What type of nutritional process do fungi primarily utilize?

<p>Absorptive heterotrophy through enzyme secretion (B)</p> Signup and view all the answers

What is a common feature of both the reproduction strategies in protozoa and fungi?

<p>Production of spores in asexual reproduction (C)</p> Signup and view all the answers

What viral mechanism involves the release of new virions from the host cell?

<p>Budding or lysis of the host membrane (D)</p> Signup and view all the answers

What is the primary effect of thermal death time (TDT) in microbial control?

<p>Duration required to kill all microbes at a specified temperature (B)</p> Signup and view all the answers

Which process involves the use of paper disks soaked in antimicrobial agents to assess effectiveness?

<p>Zone of inhibition technique (A)</p> Signup and view all the answers

How do quaternary ammonium compounds function as disinfectants?

<p>Denaturing proteins and disrupting membranes (A)</p> Signup and view all the answers

What is the effect of ionizing radiation on microbial cells?

<p>Creates breaks in DNA structure (B)</p> Signup and view all the answers

What distinguishes moist heat sterilization from dry heat sterilization methods?

<p>Moist heat kills by coagulating proteins, while dry heat oxidizes organic materials (D)</p> Signup and view all the answers

In the context of microbial control, what does the term 'Decimal Reduction Time (D-value)' refer to?

<p>Time required to reduce microbial numbers by 90% at a certain temperature (B)</p> Signup and view all the answers

Which type of physical method is effective for removing microbes from air and liquids?

<p>Filtration (C)</p> Signup and view all the answers

What role does pasteurization play in food and beverage safety?

<p>It reduces spoilage organisms without complete sterilization (D)</p> Signup and view all the answers

Flashcards

Binomial Nomenclature

The two-part naming system used to scientifically classify living organisms. The first part is the genus, and the second part is the species. For example, Escherichia coli is a bacterium found in the intestines.

Hierarchy of Classification

A hierarchical system for classifying organisms into increasingly specific groups. It starts with the broadest category, Kingdom, and narrows down to the most specific, Species.

Taxonomy

The science of classifying organisms, assigning universal names, and organizing them into categories.

Bacteria

Single-celled prokaryotic organisms that lack a nucleus and have peptidoglycan cell walls. Some are motile, meaning they can move independently.

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Archaea

Prokaryotic organisms that share some similarities to bacteria but have distinct features, including unique cell wall compositions and the capability to thrive in extreme environments.

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Fungi

Eukaryotic organisms, including yeasts (unicellular) and molds (multicellular), that obtain nutrients by decomposing organic matter.

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Spontaneous Generation

The idea that living organisms can arise spontaneously from nonliving matter. This theory was later disproven by Louis Pasteur.

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Biogenesis

The concept that life can only arise from pre-existing life. This theory replaced the idea of spontaneous generation.

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Disk Diffusion Method

A method to test antimicrobial agents by placing disks soaked in the agent on an agar plate inoculated with a test microbe. The size of the inhibition zone around the disk indicates the effectiveness of the agent.

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Sterilization

The complete removal or destruction of all forms of microbial life, including endospores.

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D-value (Decimal Reduction Time)

The time required at a specific temperature to kill 90% of a microbial population.

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Thermal Death Point (TDP)

The minimal temperature required to kill all microbes in a specific time (usually 10 minutes).

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Thermal Death Time (TDT)

The time required to kill all microbes at a set temperature.

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Heat

A method of microbial control that utilizes heat to denature proteins and disrupt cell membranes.

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Filtration

A physical method of microbial control that removes microbes from liquids or air by passing them through a filter.

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Non-ionizing radiation (UV light)

A physical method of microbial control that damages DNA by causing thymine dimers. It effectively kills microbes that are exposed to the radiation.

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Compound Light Microscope

A type of microscope that uses visible light and glass lenses to magnify objects up to 1000 times. This is a common tool used in many biological labs.

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Fluorescence Microscope

A microscope that uses ultraviolet light to view structures that have been labeled with fluorescent dyes. It's used to see specific molecules or parts of cells.

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Gram Stain

This staining method uses crystal violet, iodine, decolorizer, and safranin to differentiate bacteria into two main groups: Gram-positive (purple) and Gram-negative (pink). It's a key identification tool in microbiology.

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Resolution

The ability of a microscope to distinguish two closely spaced objects as separate entities. A higher resolution means a microscope can see more fine detail.

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Smear Preparation

The process of making a thin layer of the specimen on a glass slide to prepare it for viewing under a microscope.

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Gram-Positive Bacteria

Thick layer of peptidoglycan and teichoic acids compose these bacteria. These bacteria retain the purple color of the Gram stain.

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Gram-Negative Bacteria

These bacteria have a thin layer of peptidoglycan and an outer membrane containing lipopolysaccharides (LPS). They appear pink after the Gram stain.

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Bacterial Cell Wall

A rigid structure that supports and protects the bacterial cell. It can be either Gram-positive or Gram-negative, depending on the type of bacteria.

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Disinfection

Process that reduces microbial populations to safe levels, but may not eliminate all pathogens. Examples include boiling, chemical disinfectants, and UV radiation.

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Antisepsis

Application of antimicrobial agents to living tissue to prevent infection. Examples include using iodine on wounds or hand sanitizer.

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Sanitization

Reduction of microbial populations to acceptable levels, often used for food preparation or restaurant equipment.

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Heat Sterilization

Process of using high heat to kill microbes. Examples include autoclaving, boiling, and pasteurization.

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Radiation Sterilization

Process of using radiation to kill microbes. Gamma rays and X-rays are ionizing radiation. UV light is non-ionizing and can only sterilize surfaces.

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Desiccation

Process of removing water to inhibit microbial growth. Examples include drying food or using salt to preserve meat.

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Mycoses

Fungal infections, ranging from superficial skin infections like ringworm to serious systemic infections like histoplasmosis that can affect internal organs.

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Protozoa

Unicellular eukaryotic organisms that exhibit diverse forms and metabolic strategies. They can be found in various environments and include important pathogens.

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Plasmodium

A parasitic protozoan that causes malaria. It undergoes a complex life cycle involving humans and mosquitoes, infecting liver cells and red blood cells.

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Euglena

A flagellated protozoan that displays both photosynthetic and heterotrophic nutrition. It can use sunlight for energy or consume organic matter.

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Chitin-based cell wall

A rigid structure found in fungal cells, primarily composed of chitin. It provides structural support and protection.

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Absorptive Heterotrophy

A process by which fungi acquire nutrients by secreting enzymes that break down complex organic compounds. This allows them to digest food outside their cells.

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Spore Production

A type of asexual reproduction in fungi that involves the production of spores, such as conidiospores or sporangiospores. These spores can disperse and germinate into new fungal colonies.

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Lysogenic Cycle

A viral cycle where the virus integrates its genetic material into the host cell's genome. This allows the virus to remain dormant, replicating along with the host cell without causing immediate harm.

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Beta-proteobacteria

A class of bacteria known for their role in decomposing organic matter. Examples include Burkholderia cepacia, an opportunistic pathogen in cystic fibrosis patients, and Neisseria gonorrhoeae, the cause of gonorrhea.

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Gamma-proteobacteria

The largest and most diverse class of bacteria. Includes familiar examples like Escherichia coli, a key component of our gut microbiota, and potentially pathogenic strains like Pseudomonas aeruginosa and Vibrio cholerae.

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Delta-proteobacteria

A bacterial class that includes predators and sulfate reducers. For example, Bdellovibrio preys on other bacteria, while Desulfovibrio is crucial for the sulfur cycle.

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Epsilon-proteobacteria

A group of bacteria with helical or curved shapes, often found in oxygen-poor environments. Helicobacter pylori, a cause of peptic ulcers, is a notable example.

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Spirochetes

A group of bacteria known for their thin, flexible, helical shape. They move using axial filaments or endoflagella, which resemble internal flagella. Examples of pathogenic species include Treponema pallidum (syphilis) and Borrelia burgdorferi (Lyme disease).

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Bacteroidetes

A class of bacteria primarily found in the human gut. They are obligate anaerobes, meaning they require an oxygen-free environment. Bacteroides fragilis is an important species for gut health, but can cause infections if introduced to sterile sites.

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Transmission Electron Microscope (TEM)

Visualizes internal structures with high resolution.

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Scanning Electron Microscope (SEM)

Produces 3D images of surface structures.

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Decimal Reduction Time (D-value)

The time required to reduce microbial numbers by 90% at a specific temperature.

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Nucleus (Eukaryotic)

Encloses the cell's DNA, acting as the control center for cellular processes.

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Mitochondria

The site of ATP production, powering cellular work. It's like the cell's power plant.

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Chloroplasts

In plants and algae, these organelles capture sunlight to produce energy through photosynthesis, making them the cell's solar panels.

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Glycolysis

The process of converting glucose into pyruvate, generating a small amount of ATP and reducing equivalents like NADH.

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Light Reactions

The process of using light energy to generate ATP and NADPH. It's like the first stage of photosynthesis.

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D-value

The time required to kill 90% of a microbial population at a specific temperature. It's used to assess the effectiveness of heat treatment.

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Non-ionizing radiation

A physical method that uses UV light to damage microbial DNA. It's effective for surface sterilization but doesn't penetrate deeply.

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SARS-CoV-2

The etiological agent of COVID-19, a pandemic respiratory illness.

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What is an operon?

An operon is a group of genes that are transcribed together as a single unit. They are regulated by a common promoter and operator region.

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What is an inducible operon?

An inducible operon is activated by the presence of its substrate. This means that the genes are only transcribed when the substrate is present.

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What is a repressible operon?

A repressible operon is inhibited by the presence of its product. This means that the genes are transcribed only when the product is absent.

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What are point and frameshift mutations?

Point mutations are changes in a single nucleotide within a gene. Frameshift mutations result from insertions or deletions of nucleotides, which shift the reading frame of the gene.

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What is transformation in bacteria?

Transformation is the uptake of foreign DNA from the environment by a bacterial cell.

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What is conjugation in bacteria?

Conjugation is the direct transfer of DNA from one bacterium to another through a pilus.

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What is transduction in bacteria?

Transduction is the transfer of bacterial DNA by a virus.

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What is the difference between broad-spectrum and narrow-spectrum antibiotics?

Broad-spectrum antibiotics are effective against a wide range of bacterial species, while narrow-spectrum antibiotics target specific types of bacteria.

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Study Notes

Microbial World and You

  • Binomial Nomenclature: Organisms are named using a two-part Latin name (e.g., Escherichia coli).
  • Hierarchical Classification: Organisms are categorized into broader groups (kingdom, phylum) to narrower ones (genus, species).
  • Taxonomy: The science of classifying organisms, giving them universal names, and fitting them into categories.

Types of Microbes

  • Bacteria: Single-celled prokaryotes with peptidoglycan walls; some are mobile using flagella.
  • Archaea: Prokaryotes distinct from bacteria, often found in extreme environments.
  • Fungi: Eukaryotic organisms (yeasts or molds) that break down organic matter.
  • Protozoa: Single-celled eukaryotes which move using pseudopods, cilia, or flagella.
  • Algae: Photosynthetic eukaryotes vital to aquatic food webs, producing oxygen.
  • Viruses: Acellular, obligate intracellular parasites composed of nucleic acid and protein.
  • Multicellular Animal Parasites: Include various worms (helminths) that impact human health.

Classification of Microbes

  • Domains: Three major groups: Bacteria, Archaea, and Eukarya.
    • Bacteria: Unicellular prokaryotes with peptidoglycan walls.
    • Archaea: Unicellular prokaryotes without peptidoglycan walls, often found in extreme environments.
    • Eukarya: Includes protists, fungi, plants, and animals.

Spontaneous Generation Debate

  • Proponents: Believed life could arise from non-living matter (e.g., John Needham).
  • Opponents: Supported biogenesis (life from pre-existing life) (e.g., Francesco Redi).

Pasteur's S-neck Flask Experiment

  • Demonstrated that microbes, not air, cause contamination. Sterile broth remained free of microorganisms as long as the flask's neck trapped airborne particles.

Koch's Postulates

  • A set of criteria to establish a causal link between a microbe and a disease:
    1. The suspected pathogen must be present in all cases of the disease.
    2. The pathogen must be isolated and grown in pure culture.
    3. The cultured pathogen must cause the disease when introduced into a healthy host.
    4. The pathogen must be recoverable from the experimentally infected host.

Observing Microorganisms Through a Microscope

  • Compound Light Microscope: Uses visible light and glass lenses to magnify up to 1000x.
  • Phase-Contrast: Enhances contrast in transparent specimens without staining.
  • Fluorescence Microscope: Uses UV light to observe fluorescently labeled structures.
  • Electron Microscope:
    • Transmission (TEM): Visualizes internal structures with high resolution.
    • Scanning (SEM): Produces 3D images of surface structures.

Preparing Smears for Staining

  • Thinly spread specimens onto a slide, air dry, and heat-fix.
  • Applying stains for visualization of structures.

Types of Stains

  • Simple Stains: Use a single dye for visualization.
  • Differential Stains: Highlights differences between cell types (e.g., Gram stain, acid-fast stain
  • Special Stains: Visualize specific structures (e.g., endospores, capsules).

Prokaryotic and Eukaryotic Cells Functional Anatomy

  • Bacterial Cell Structures and Functions: Cell wall, plasma membrane, ribosomes, nucleoid, pili, flagella, capsule, endospores.
  • Eukaryotic Cell Features: Nucleus, mitochondria, chloroplasts, endoplasmic reticulum, Golgi apparatus, cytoskeleton.

Microbial Metabolism

  • Enzymes: Protein portion (apoenzyme), non-protein helpers (cofactor/coenzyme), complete enzyme (holoenzyme).
  • Reactions and factors affecting enzyme activity: Temperature, pH, substrate concentration, inhibitors (competitive and non-competitive).
  • ATP Generation: Substrate-level phosphorylation and oxidative phosphorylation.

Key Pathways

  • Glycolysis: Converts glucose to pyruvate, producing ATP and NADH.
  • Krebs Cycle (Citric Acid Cycle): Produces ATP, NADH, and FADH2.
  • Electron Transport Chain (ETC): Utilizes a proton gradient to produce ATP.
  • Fermentation: Anaerobic process that regenerates NAD+ for glycolysis producing lactic acid or ethanol.

Microbial Growth Requirements

  • Physical: Temperature, pH, osmotic pressure.
  • Chemical: Essential macronutrients (carbon, nitrogen, phosphorus, sulfur) and trace elements necessary for enzyme function.
  • Media: Selective and differential media to cultivate specific microbes.

Control of Microbial Growth

  • Microbial Death Rate: Permanent loss of reproductive ability; death occurs logarithmically.
  • Microbial Control Agents: Methods that alter membrane permeability, denature proteins, or damage DNA.
  • Physical Methods: Heat, radiation, filtration.
  • Chemical Methods: Disinfectants, antiseptics, and other microbial control agents.

Microbial Genetics

  • DNA Replication: Unwinding DNA, synthesizing RNA primers, leading and lagging strands, Okazaki fragments, and termination steps.
  • Transcription: DNA to mRNA using RNA polymerase.
  • Translation: mRNA to protein at ribosomes (mRNA, tRNA, rRNA).
  • Mutations: Point mutations and frameshift mutations due to substitution or insertion/deletion of nucleotides.

Recombinant DNA (rDNA)

  • Combining DNA from different sources to create genetic modifications.

DNA and RNA Structures and Function

  • Structure and Replication Detailed explanation of DNA structure, double helix, and semi-conservative replication. Includes enzymes involved in DNA replication (helicase, polymerase, ligase), and roles of restriction enzymes, PCR, southern blotting, and electrophoresis.
  • Transcription: RNA polymerase's role in DNA to RNA processing. Key enzymes and steps.
  • Translation: RNA molecule to protein. Translation steps and key players (mRNA, tRNA, rRNA).

Classification of Microorganisms

  • Domains: Bacteria, Archaea, and Eukarya based on cell structure, ribosomal RNA differences, and metabolic processes.

Chemotherapy

  • Spectrum of Antimicrobial Activity: Broad-spectrum vs narrow-spectrum.
  • Modes of Action: Methods of inhibiting microbial functions like cell wall synthesis, protein synthesis, membrane integrity, etc

Prokaryotes, Protozoa, Fungi and Viruses

  • Prokaryotes (Bacteria, Archaea): General characteristics, metabolic variety, classification methods.
  • Protozoa: Eukaryotic, single-celled microbes; diverse locomotion and nutritional strategies. Pathogens like Plasmodium.
  • Fungi: Eukaryotic, chitin cell-walled microbes with diverse metabolic roles and impacts, pathogenicity.
  • Viruses: Acellular entities; diverse genetic material and infection strategies; mechanisms of viral replication, including the lytic and lysogenic cycles. Pathogenicity mechanisms such as viral adherence, entry, and replication are examined.

Epidemiology

  • Defining acute, chronic, latent, communicable, and noncommunicable diseases.
  • Infectious disease transmission mechanisms, e.g., direct contact, indirect contact, vectors.
  • Nosocomial infections and hospital-acquired infections are also included.

Pathogenicity

  • Adherence: Microbes attaching to surfaces via adhesins.
  • ID50: Infectious dose resulting in disease in 50% of individuals.
  • Endotoxins: Released from Gram-negative bacteria cell walls, triggering inflammation.
  • Exotoxins: Secreted proteins poisonous to cells.
  • Parenteral route: Methods pathogens can bypass or penetrate barriers; e.g., wounds, injections.
  • M protein: Streptococcus virulence factor; aids immune evasion.
  • Cytopathic Effects: Virus-induced cellular damage demonstrated via inclusion bodies, cell fusion (syncytia) among others.

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