Microbiology: An Introduction

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Questions and Answers

Why is the study of microbial interactions with other organisms considered important?

  • Because these interactions have no effect on environmental processes.
  • Because only macroscopic organisms impact ecosystem functions.
  • Because these interactions lead to the creation of various products and influence ecological balance. (correct)
  • Because microbes are too small to be seen without a microscope.

Which characteristic distinguishes archaea from bacteria?

  • Archaea possess linear DNA enclosed within a membrane-bound nucleus.
  • Archaea's membrane lipids and proteins create extremophile characteristics using pseudopeptidoglycan. (correct)
  • Archaea have peptidoglycan in their cell walls.
  • Archaea replicate through mitosis, whereas bacteria use binary fission.

Why are protists considered a paraphyletic group, rather than a distinct kingdom?

  • Protists are a diverse group in which members of other groups can also be found. (correct)
  • Protists uniquely consist of prokaryotic cells, unlike fungi, which are eukaryotic.
  • Protists are different in that their cell walls contain cellulose, unlike fungi.
  • Protists are fully classified due to their specific characteristics and behaviors.

How does ribosomal RNA (rRNA) influence the classification of organisms into three domains of life?

<p>Differences in rRNA sequences led to the creation of the three domains because rRNA is part of the ribosome. (A)</p>
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Explain the role of peptidoglycan in the context of bacterial cells.

<p>Peptidoglycan provides a unique cell wall in prokaryotic cells which supports cell structure and morphology. (D)</p>
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How does the presence or absence of a nuclear membrane affect cellular processes?

<p>The presence of a nuclear membrane permits more complex control over where transcription occurs relative to translation. (B)</p>
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What determines whether bacteria are classified as Gram-positive or Gram-negative?

<p>The existence of a peptidoglycan layer and either mono or diderm bacteria. (B)</p>
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How do bacterial capsules support immune evasion?

<p>Masking surface antigens and opsonization. (D)</p>
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What specialized structures enable bacteria to sense magnetic fields, and what advantage does this adaptation convey?

<p>Magnetotactic bacteria use magnetosomes to orient in magnetic fields. (D)</p>
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How does a bacterial endospore improve bacteria ability to adapt to environmental stress?

<p>It allows the bacterium to persist in a temporarily inactive state. (D)</p>
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What is the primary role of the bacterial cytoskeleton?

<p>The primary role is to give cell shape and support the cell membrane. (A)</p>
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How does the bacterial flagellum function to determine the direction of movement?

<p>By controlling the direction of force, the bacterial flagellum generates a rotational and directional whip-like motion. (C)</p>
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How do the differences in the actions of MreB and CreS determine the shape of bacterial cells?

<p>Bacterial shapes are determined by MreB's role in rod shape and CreS's role in creating curved shapes. (C)</p>
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How do bacteria exchange genetic material through conjugation, and what elements are essential for this mechanism?

<p>Bacterial conjugation creates a transfer of plasmids to enable the formation of a specialized structure. (B)</p>
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How do Type IV secretion systems affect a cell's cellular constitution to share materials?

<p>The Type IV creates a pathway with a pore that can push some cell wall, but remains a stable channel. (C)</p>
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What factors influence whether bacteria will express specific genes, and how is this regulated?

<p>Horizontal gene transfer as well as sporulation is not what this depends on. It depends on stimuli, which lead to direct shifts due to genetic regulatory processes. (A)</p>
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How does horizontal gene transfer aid in adaptation and the sharing of traits?

<p>Horizontal transfer allows new DNA to be expressed or even recombination to take place in the bacteria. (B)</p>
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What are the advantages and disadvantages of organisms classified based on bacterial shapes?

<p>Different shapes are directly correlated to environmental pressures, and is only adaptive to specific species. (D)</p>
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Why does cellular adaptation reduce a species ability to diversify its genetic material?

<p>Cellular adaptation is a strategy to reduce genetic material across a long timeframe to focus on survival. (A)</p>
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Which of the following represents the most accurate comparison between eukaryotic flagella and prokaryotic flagella?

<p>As an organelle within flagellates, eukaryotic flagella are not homologous and do not share similarity to prokaryotic flagella. (B)</p>
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How does electrostatic repulsion contribute to immune evasion in some bacteria?

<p>Polysaccharides create electrostatic repulsion that disrupts electrostatic recognition and immune functions. (B)</p>
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What specialized feature do some species harness to adhere to the surfaces of host cells?

<p>Having fimbriae and adhesive proteins contributes to an organism's ability for adhesion. (A)</p>
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How are bacteria recognized in cases where biofilms secrete molecules to alter the immune system?

<p>Biofilms require secreted molecules that induce responses such as suppressing cytokine. (B)</p>
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When considering bacterial attachment to surfaces, what distinguishes the functions of capsule glycocalyx and biofilm matrices?

<p>Capsule glycocalyx facilitates immune function, whereas biofilm matrix provides physical structure and stress resistance. (B)</p>
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How does the presence of persister cells within a bacterial biofilm challenge antibiotic efficacy?

<p>Their dormant state does not have antigens which the drugs target and can withstand treatment or other conditions. (B)</p>
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How do bacteria change under stressed environments?

<p>Environmental stressors can lead to the expression of new phenotypes due to horizontal gene transfer. (C)</p>
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In what way do surface-exposed proteins in Gram-positive bacteria influence cell function, and what mechanisms are involved?

<p>There are a number of cell wall actions driven by surface proteins, which influence structure, recognition and function. (C)</p>
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Which of the following correctly describes differences between a virus and bacterial cell?

<p>Bacterial cells are biological machines that often act as the host cell for a virus. (D)</p>
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What role does the presence or absence of membrane-bound organelles play in the overall function of an organism?

<p>Membrane-bound organelles increase function across the cell of eukaryotes. (D)</p>
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In Gram-negative bacteria, what is the significance of the O-antigen component of lipopolysaccharides (LPS)?

<p>Shifts due to environmental adaptations make the O-antigen difficult to be recognized by the host immune system. (B)</p>
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How does maintaining turgor pressure relate to bacterial cell integrity, and what mechanisms are employed to regulate it?

<p>Bacteria can have rigid/ structural strength which allows some rigidity. (D)</p>
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How does a small aquatic body help maintain some marine species? (Describe their structure, then give a related application).

<p>Gas vesicles make it the marine species has buoyancy for photosynthesis. (B)</p>
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How are carbon structures essential inside photosynthesis?

<p>Organic carbon supports the photosynthetic reaction in some bacteria. (B)</p>
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How does the nanostructure in bacteria support biofilm function?

<p>Nanowires enable only long range electron transfer in a biofilm. (D)</p>
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Flashcards

Microbiology

Study of microscopic organisms (viruses, bacteria, algae, fungi, and protozoa) and their functions.

Bacteriology

Studies bacteria, including identification, classification, and characteristics.

Virology

Studies viruses and their non/living characteristics.

Mycology

Studies fungi, their genetics, biochemical properties, and taxonomy.

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Parasitology

Studies parasites, their life cycle and their host interactions.

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Immunology

Study of immune systems in all organisms

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Prokaryotes

Small, structurally simple cells that include Bacteria and Archaea.

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Plasmid

DNA of a prokaryote

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Eukaryotes

Typically larger cells that have membrane-enclosed structures.

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Organelles

Membrane-enclosed structures in the cytoplasm of eukaryotic cells.

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Nucleoid

Region in prokaryotes where the genetic material is located.

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Binary fission

Process of cell reproduction through asexual reproduction

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LUCA

Last Universal Common Ancestor: of all life forms

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3 Domains of Life

Bacteria, Archaea, Eukaryota

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Extremophiles

Organisms thriving in extreme conditions (e.g., very hot or salty).

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Halophiles

high salt concentration.

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Thermophiles

very hot temperatures.

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Genome

Living blueprint of an organism.

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Genetic exchange

Process where genetic exchange has improved survival rate.

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Pasteurization

Process to kill contaminants using heat to kill harmful bacteria in food and beverages.

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Microorganisms grown to produce commodities

Naturally occurring

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History of Microbiology

Microscopes and culturing techniques.

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Humoral Theory

Body is affected by 4 humors

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Marcus Terentius Varro, On Agriculture

There are small creatures that can cause disease.

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Spontaneous generation

Living things come from non-living matter

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Robert Hooke, Micrographia (1665)

Illustrated fruiting structures of molds.

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Antonie van Leeuwenhoek

The first to see bacteria, smallest microbial cells.

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Francesco Redi experiments

Maggots came from flies' eggs, not spontaneously.

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Lazzaro Spallanzani

Modified experiment which used an air tight sealed flask

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Swan-neck flask or 'Pasteur Flask'

Process where air can pass but contaminates cannot

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Attenuation

Weakening of virus

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Ferdinand Cohn

Bacterial endospore discovery.

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Germ Theory of Disease

Disease are caused by germs

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Cycle of Endospore

Vegetative cell to endospore to vegetative cell

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Sphaerobacteria

spherical bacteria

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Advancement on Sterilization

Influenced Development of Autoclave.

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Postulates of Koch

framework providing microbial-causing diseases.

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Limitation of Kock 's Postulates

cannot see; violate postulate.

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Pure culture

Isolated microorganism

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Study Notes

Microbiology: An Introduction

  • Focus is the microscopic organisms (viruses, bacteria, algae, fungi, slime molds, and protozoa) and how they function
  • Consideration the diversity and evolution of microbial cells, and how different kinds of microorganisms originate and their purpose
  • Exploration of how microbes associate and cooperate, and their roles in soils, waters, in animals, and in plants

Branches of Microbiology

  • Bacteriology concentrates on the study of bacteria
  • Virology study viruses, infectious agents with living and nonliving characteristics
  • Mycology focuses on study of fungi
  • Parasitology focuses on parasites and helminths
  • Immunology focuses on immune system and interactions
  • Industrial Microbiology harnesses microorganisms to create antibiotics, food, enzymes, amino acids, vaccines, and fine chemicals

Elements of Microbial Cells

  • Prokaryotes include Bacteria and Archaea, small, structurally simple cells

Key Structures of Prokaryotes

  • Cell wall
  • Cytoplasmic membrane
  • Nucleoid
  • Cytoplasm
  • Plasmid
  • Ribosome
  • Plasmid is DNA of prokaryotes

Eukaryotes

Key Traits

  • Eukaryotes typically possess greater dimensions than prokaryotes
  • Eukaryotes include organelles are membrane-enclosed cytoplasmic structures

Key Structures

  • Cell wall
  • Cytoplasmic membrane
  • Mitochondria
  • Nuclear envelope
  • Nucleus
  • Ribosomes
  • Endoplasmic reticulum
  • Cytoplasm
  • Golgi complex

Cell Division

  • Binary fission is asexual
  • Prokaryotes reproduction is binary fission
  • Eukaryotes reproduction is mitosis and meiosis and are asexual and sexual

Ribosomes

  • Prokaryotes have smaller ribosomes (70S; 50S +30S subunits)
  • Eukaryotes have Larger ribosomes (80S; 60S +40S subunits)
  • Mitochondria and chloroplasts possess 70S ribosomes

Cell Wall

  • Bacteria possesses a peptidoglycan cell wall
  • Eukaryotes plant cells with cellulose in with chitin in fungi, animals cells lack wall
  • Archaea possesses a cell wall, made of pseudopeptidoglycan or other polymers

Cytoskeleton

  • Prokaryotes have no cytoskeleton or is very simple cytoskeleton
  • Eukaryotes have a well developed cytoskeleton (microtubules, microfilaments, and intermediate filaments)

Flagella

  • Prokaryotes flagella have a simple structure
  • Eukaryotes flagella have a complex structure
  • Prokaryotes use protein to rotates like a propeller
  • Eukaryotes use microtubules (9+2 arrangement) to whip back and forth

Reproduction

  • Prokaryotes undergo asexual reproduction (binary fission) and horizontal gene transfer (conjugation, transformation)
  • Eukaryotes undergo sexual (meiosis) and asexual (mitosis) reproduction

Metabolism

  • Prokaryotes metabolism is diverse; can thrive in extreme environments
  • Eukaryotes metabolism is less diverse generally adapted to moderate environments

Examples

  • Examples of Prokaryotes are Escherichia coli (bacteria), Methanogens (archaea)
  • Examples of Eukaryotes are Saccharomyces cerevisiae (yeast), Homo sapiens (humans),, Arabidopsis (plant)

Extremophiles

  • Extremophiles thrive in extreme conditions
  • Thermophiles thrive in hot temperatures
  • Halophiles thrive in hight salt conditions
  • Life process are controlled by cells and genomes
  • Genome is defined the living blueprint of an organism and its characteristics

Location

  • Nucleus exists in eukaryotes
  • Nucleoid exists in prokaryotes

Evolution

  • Consider LUCA, the Last Universal Common Answer
  • Considered and Ancestral cell from 3.5 bya
  • There are 3 Domains of Life including Bacteria Archaea Eukarya

Microbial Interactions & Environment

  • After the first cells arose from non-living materials, subsequent growth formed cell populations and these began to interact to form microbial communities
  • Genetic exchange served up variants that could be selected for improvements that made their success and survival probable
  • Microorganisms are present everywhere on Earth that will support life.
  • Application of knowledge by microbiologists greatly advanced human health and welfare

Role of Microbes

  • Food and Agriculture through Pasteurization
  • Production of valuable human products like insulin
  • Production of Energy via bioreactors
  • Clean up of the environment through bioremediation
  • Impact of varies based on different organisms
  • Nitrogen-fixing bacteria converts nitrogen into ammonia
  • Microbes aid digestion of cellulose by ruminants (cows)
  • Bacillus thuringiensis forms crystalline toxins against pests for crop longevity

Importance

  • For Human are present in the gastrointestinal tract
  • Prebiotics nourish probiotics
  • Probiotics nourishes the body
  • Dysbiosis is an imbalance of microorganisms in the body
  • Microbes are used in food to produce fermented foods and beverages
  • Saccharomyces cerevisiae ferments sugar and alcohol

Energy Production

  • Methane produced by Product of Methanogens (Archaebacteria)
  • Animal waste and cellulose converted to ethanol and methane
  • Soybeans contain oils converted to fuel for diesel engines
  • The accelerate the cleanup process with pollutants like oil
  • Microorganisms also make valuable products like Penicillin, the first antibiotic, & in the production of insulin.

History of Microbiology

  • Started during the 19th century
  • Microscopes and culturing techniques were used by Hippocrates, considered the "Father of Medicine" who used the Humoral Theory of the body
  • Human humors include Blood, Phlegm, Yellow Bile, Black Bile

Physicians

  • Galen: Greek physician among one of the most accomplished
  • Marcus Terentius Varro: Roman polymath and On Agriculture described "minute creatures" unseen causing diseases
  • Aristotle noted living things can arise from non-living
  • Robert Hooke: Mathematician and natural historian
  • Antonie van Leeuwenhoek: 1st to see bacteria, smallest microbial cells
  • Francesco Redi demonstrated life does not spontaneously generate.

Challenges

  • First to challenge theory of spontaneous generation is
  • Experiments included open gauze
  • John Needham: Errors in experiment, endospore still present in flasks
  • Lazzaro Spallanzani Italian: More boiling time, air tight-sealed flask
  • Edward Jenner, “Father of Immunology”
  • First vaccine of smallpox
  • Used the Latin word vacca = cow

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