MICR 290 Course Overview Quiz

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Questions and Answers

What is the main focus of the MICR 290 course?

  • Developing new vaccines
  • Understanding viral infections
  • Studying human anatomy
  • Controlling bacterial growth (correct)

Which method is NOT mentioned as a way to control bacterial growth?

  • Antisepsis
  • Radiation therapy (correct)
  • Disinfection
  • Sanitization

What is the purpose of testing antibiotic susceptibility?

  • To measure bacterial growth rates
  • To discover new antibiotic compounds
  • To aid in vaccine development
  • To determine the effectiveness of an antibiotic against specific bacteria (correct)

Which section of the module focuses on antibiotic discovery?

<p>Section 06 (D)</p> Signup and view all the answers

Why is the control of bacterial growth considered critical?

<p>Bacteria can cause infections that impact health (D)</p> Signup and view all the answers

Which option describes antisepsis?

<p>The destruction of pathogens on living tissue (B)</p> Signup and view all the answers

What could be a consequence of distributing the Module Companion Guide illegally?

<p>Sanctions for academic integrity violation (A)</p> Signup and view all the answers

Which of the following is not a section title mentioned in the module contents?

<p>Alternative Antibiotics (B)</p> Signup and view all the answers

What is the primary mechanism by which soap removes bacteria from the skin?

<p>Mechanical removal through the disruption of oily films (D)</p> Signup and view all the answers

Which of the following is NOT a characteristic of antibiotics?

<p>Used primarily for treating viral infections (A)</p> Signup and view all the answers

Which chemical method is primarily used to disrupt lipid membranes?

<p>Alcohol (C)</p> Signup and view all the answers

What is a common method used to determine the efficacy of chemical agents at killing bacteria?

<p>Disk diffusion test (A)</p> Signup and view all the answers

Which of the following chemicals reacts with DNA to modify nitrogenous bases?

<p>Bleach (D)</p> Signup and view all the answers

What happens to proteins when they are denatured by chemical agents?

<p>Their structure is altered, leading to loss of function (C)</p> Signup and view all the answers

Which of the following statements about disinfectants and antiseptics is correct?

<p>Disinfectants usually have a broader application than antiseptics. (C)</p> Signup and view all the answers

Which class of chemicals interrupts protein functions through hydrophobic interactions?

<p>Alcohols (C)</p> Signup and view all the answers

What happens to most bacteria at low temperatures below 8 °C?

<p>Their metabolism slows down. (A)</p> Signup and view all the answers

Which of the following is a characteristic of using high temperatures to control bacterial growth?

<p>It can kill bacteria effectively. (B)</p> Signup and view all the answers

What is the primary effect of refrigeration on bacteria in food?

<p>It inhibits bacterial growth. (A)</p> Signup and view all the answers

Which statement about bacterial survival at low temperatures is true?

<p>Some bacteria can grow slowly at low temperatures. (A)</p> Signup and view all the answers

How do physical methods of bacterial control differ from chemical methods?

<p>Physical methods utilize agents like temperature and radiation. (C)</p> Signup and view all the answers

What is a common misconception about low temperatures and bacterial reproduction?

<p>They slow down the metabolism but do not kill most bacteria. (C)</p> Signup and view all the answers

What is the primary purpose of using high temperatures in bacterial control methods?

<p>To kill bacteria directly. (A)</p> Signup and view all the answers

Which of the following statements about temperature control methods is accurate?

<p>Low temperatures primarily inhibit bacterial growth without killing. (C)</p> Signup and view all the answers

What happens if the annealing temperature is set too high during PCR?

<p>Primers are unable to bind to the template. (A)</p> Signup and view all the answers

Why is it important to determine the optimal annealing temperature on a case-by-case basis?

<p>It ensures primers can bind to the template DNA. (D)</p> Signup and view all the answers

What is the typical extension temperature for DNA polymerase during PCR?

<p>68 - 72 °C (A)</p> Signup and view all the answers

What role do the primers play during the PCR process?

<p>They bind to the template DNA. (C)</p> Signup and view all the answers

Why are thermostable DNA polymerases used in PCR?

<p>They can function at high temperatures without denaturing. (A)</p> Signup and view all the answers

What is a potential consequence of setting the annealing temperature too low?

<p>Primers may bind to unintended templates. (D)</p> Signup and view all the answers

What is the significance of the complementary nucleotide sequences of the primers?

<p>They allow for specific binding to the template DNA. (A)</p> Signup and view all the answers

Which of the following correctly describes Taq polymerase?

<p>It is derived from a thermophilic bacterium. (C)</p> Signup and view all the answers

What is the primary reason for increasing the ionic strength of a buffer in protein purification?

<p>To stabilize protein interactions without altering pH (B)</p> Signup and view all the answers

What is a potential consequence of washing a cation exchange column with Buffer B directly?

<p>All bound proteins will elute, contaminating the desired protein (C)</p> Signup and view all the answers

Which of the following methods can be used to create a buffer gradient in purification processes?

<p>Employing an FPLC with separate pumps for each buffer (A)</p> Signup and view all the answers

In an ion exchange chromatography setup, which proteins elute first during a gradual increase in ionic strength?

<p>Proteins that are less positively charged (B)</p> Signup and view all the answers

What are the two types of gradient washes used in cation exchange chromatography?

<p>Stepwise and linear wash (B)</p> Signup and view all the answers

Why might one use nickel affinity chromatography instead of ion exchange chromatography?

<p>It specifically targets histidine-tagged proteins (B)</p> Signup and view all the answers

During cation exchange chromatography, which characteristic determines the order in which proteins are eluted?

<p>The charge of the proteins in relation to the buffer (D)</p> Signup and view all the answers

Which of the following best describes a linear gradient in buffer washing?

<p>Percentage of Buffer B increases consistently over time (A)</p> Signup and view all the answers

What effect does a high ionic strength buffer have on proteins during ion exchange chromatography?

<p>It allows salt ions to outcompete proteins for binding to the resin. (C)</p> Signup and view all the answers

Which buffer condition is best for enhancing the positive charge of a recombinant protein in cation exchange chromatography?

<p>Low pH with low salt concentration (B)</p> Signup and view all the answers

How can you elute the recombinant protein from a cation exchange column?

<p>Increase the salt concentration of the buffer. (B)</p> Signup and view all the answers

What happens to neutral or negatively charged proteins during the washing phase of cation exchange chromatography?

<p>They elute quickly from the column. (D)</p> Signup and view all the answers

What is the main purpose of adjusting the buffer during the elution of proteins in cation exchange chromatography?

<p>To separate the recombinant protein from other charged proteins. (A)</p> Signup and view all the answers

What role do salt ions play in the context of ion exchange chromatography?

<p>They compete with proteins for resin binding sites. (C)</p> Signup and view all the answers

What would be the impact of using a buffer with low ionic strength in cation exchange chromatography?

<p>It allows proteins to bind more effectively to the resin. (B)</p> Signup and view all the answers

In ion exchange chromatography, what is the consequence of using a high pH buffer?

<p>It enhances the binding of negatively charged proteins. (B)</p> Signup and view all the answers

Flashcards

Controlling Bacterial Growth

The ability to prevent the growth of bacteria, essential in controlling bacterial infections.

Sterilization

Removing ALL microorganisms, including bacterial spores, from a surface or object.

Disinfection

Reducing the number of microorganisms on a surface or object to a safe level.

Antisepsis

Reducing the number of microorganisms on living tissue, particularly pathogens.

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Sanitization

Reducing the number of microorganisms on food-contact surfaces to a level deemed safe for public health.

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Physical Methods of Bacterial Control

Methods that utilize physical agents like radiation, osmosis, and temperature to inhibit bacterial growth or kill them.

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Bacteriostatic Effect

Bacterial metabolism slows at low temperatures, hindering reproduction. Common in refrigerators.

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High Temperature Bacterial Control

High temperatures kill bacteria. This method involves using heat to control bacterial growth.

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Bactericidal Methods

The physical methods used to kill bacteria, including methods involving heat.

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Optimal Growth Temperature

A range of temperatures that encompasses the ideal temperature for the survival and reproduction of a particular bacterial species.

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Antibacterial agents

Chemicals that kill or inhibit the growth of bacteria. Examples include antibiotics, bleach, and alcohol.

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Antibiotics

A type of antibacterial agent that targets specific bacterial pathways, often used internally to treat infections.

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Protein denaturation

A common mechanism of action for antibacterial chemicals, where they disrupt the structure of proteins, often by impacting the amino acid chains.

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Lipid membrane disruption

A common mechanism of action for antibacterial chemicals, where they damage bacterial cell membranes, leading to leakage and cell death.

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Ionic Strength in Ion Exchange

In ion exchange chromatography, the ionic strength of the buffer affects how strongly proteins bind to the resin. A low ionic strength means less salt ions competing with proteins for binding sites, allowing proteins to bind better.

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Cation Exchange and pH

A cation exchange resin attracts positively charged molecules. A low pH will increase the positive charge of a protein, enhancing its binding to the resin.

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Elution from Cation Exchange

To elute a protein from a cation exchange column, you need to reduce its affinity for the resin. Increase the salt concentration to outcompete the protein for binding sites.

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Buffer pH for Cation Exchange

A buffer with a low pH is typically used to bind a positively charged protein to a cation exchange resin. This is because the low pH increases the positive charge of the protein, making it bind more strongly to the resin.

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Elution with Increased Salt Concentration

Increasing the salt concentration in a buffer disrupts the binding of proteins to the resin. This allows the desired protein to be eluted from the column.

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Cation Exchange Chromatography

Ion exchange chromatography separates molecules based on their charge. A cation exchange resin is used to separate positively charged molecules.

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High Ionic Strength in Ion Exchange

In ion exchange chromatography, the ionic strength of the buffer affects how strongly proteins bind to the resin. A high ionic strength means more salt ions competing with proteins for binding sites, weakening the protein's binding

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Buffer Gradient

The process of gradually increasing the ionic strength of a buffer solution during chromatography to elute proteins with different charge strengths.

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Stepwise Gradient

Using a mix of two buffers with different ionic strengths to gradually increase the salt concentration in a chromatography column.

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Linear Gradient

A type of gradient in chromatography where the ionic strength of the buffer is increased gradually over time, allowing proteins to elute at different rates based on their charge.

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FPLC (Fast Protein Liquid Chromatography)

A specialized chromatography system that uses pumps to precisely control the flow of buffers and gradients, used for accurate protein purification.

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Nickel Affinity Chromatography

A type of chromatography that uses specific interactions between proteins and metal ions immobilized on a resin to purify proteins.

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Annealing Temperature

The temperature at which the primers bind to the template DNA during PCR.

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Extension Temperature

The temperature at which DNA polymerase extends the primers, adding nucleotides to the 3' end, during PCR.

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PCR Primers

Short sequences of nucleotides designed to bind to specific regions of template DNA, initiating PCR amplification.

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PCR Amplification

The process of copying DNA using PCR, where the primers bind to the template DNA, and DNA polymerase extends the primers, creating copies of the target DNA sequence.

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Thermostable DNA Polymerase

A thermostable DNA polymerase used in PCR, capable of functioning at high temperatures required for the process.

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Taq Polymerase

A commonly used thermostable DNA polymerase in PCR, derived from the thermophilic bacterium Thermus aquaticus.

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Optimal Annealing Temperature

A specific temperature required for each PCR reaction, determined by the primer sequence, ensuring optimal binding and amplification.

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DNA Denaturation

The process of separating double-stranded DNA into single strands by applying high temperatures.

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Study Notes

Information on the Module Companion Guide

  • This guide complements the online course slides.
  • There may be discrepancies between the guide and the online module. If so, refer to the online module.
  • Do not distribute the guide to students who are not enrolled in the course. Doing so violates the academic integrity policy.

Information on Protecting the Integrity of the Course

  • Do not share the Module Companion Guide with students who are not enrolled in the course; this is a violation of academic integrity.
  • Students caught violating the Academic Integrity Policy at Queen's University can face sanctions.

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