Campbell Biology Ch 8 Intro to Metabolism
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Questions and Answers

What is metabolism and why is it essential for organisms?

Metabolism is the totality of an organism's chemical reactions, essential for converting energy and building materials necessary for growth and survival.

Differentiate between catabolic and anabolic pathways.

Catabolic pathways break down complex molecules to release energy, while anabolic pathways consume energy to build complex molecules from simpler ones.

How does bioenergetics relate to the study of living organisms?

Bioenergetics studies how energy flows through living organisms, focusing on the transformations and utilizations of energy.

What is the first law of thermodynamics and its significance?

<p>The first law of thermodynamics states that energy cannot be created or destroyed, only transformed or transferred, highlighting the conservation of energy in the universe.</p> Signup and view all the answers

Explain the second law of thermodynamics in relation to energy recycling in organisms.

<p>The second law of thermodynamics states that energy transformations are not 100% efficient, meaning organisms cannot infinitely recycle energy.</p> Signup and view all the answers

Define kinetic energy and provide an example of its relevance in biological systems.

<p>Kinetic energy is the energy of movement; for example, it is seen when muscles contract to enable movement in organisms.</p> Signup and view all the answers

What role do enzymes play in metabolic pathways?

<p>Enzymes act as catalysts in metabolic pathways, speeding up chemical reactions and regulating metabolic processes.</p> Signup and view all the answers

Describe the relationship between potential energy and chemical bonds in molecules.

<p>Potential energy in molecules is based on the arrangement of bonds; breaking and forming bonds during reactions can release or store energy.</p> Signup and view all the answers

What does the symbol 𝚫 represent in thermodynamics?

<p>The symbol 𝚫 represents 'the difference between' two states, often used to indicate changes in variables such as enthalpy or Gibbs free energy.</p> Signup and view all the answers

What is the significance of ATP hydrolysis during shivering in organisms?

<p>ATP hydrolysis during shivering produces heat that helps warm the body, aiding in thermoregulation.</p> Signup and view all the answers

Explain how it is determined if a reaction is spontaneous using 𝚫G.

<p>A reaction is spontaneous if 𝚫G is negative; this indicates a release of free energy.</p> Signup and view all the answers

Explain the process of phosphorylation using ATP in endergonic reactions.

<p>In endergonic reactions, ATP donates a phosphate group to form a phosphorylated intermediate, enabling the reaction to proceed by lowering the free energy requirement.</p> Signup and view all the answers

What are the implications of a reaction having a positive 𝚫G?

<p>A positive 𝚫G indicates the reaction is not spontaneous and absorbs free energy.</p> Signup and view all the answers

How do exergonic and endergonic reactions differ in terms of energy change?

<p>Exergonic reactions release free energy (negative 𝚫G), while endergonic reactions absorb free energy (positive 𝚫G).</p> Signup and view all the answers

How can two reactions be coupled to make an overall reaction exergonic?

<p>If the energy required (ΔG) for the endergonic reaction is less than the energy released from ATP hydrolysis, the two reactions can be coupled to make the overall reaction exergonic.</p> Signup and view all the answers

What characterizes a system at equilibrium?

<p>At equilibrium, the forward and reverse reactions occur at the same rate, and 𝚫G is minimized.</p> Signup and view all the answers

What happens during the hydrolysis of ATP?

<p>During ATP hydrolysis, the terminal phosphate group is cleaved off, resulting in ADP and inorganic phosphate, releasing approximately 7.3 kcal of energy.</p> Signup and view all the answers

Describe the role of ATP in cellular metabolism.

<p>ATP serves as the energy currency of the cell, releasing energy through hydrolysis to fuel various cellular processes.</p> Signup and view all the answers

Describe the role of enzymes in chemical reactions involving ATP.

<p>Enzymes act as catalysts that lower the activation energy required for chemical reactions, enabling ATP to effectively participate in metabolic processes.</p> Signup and view all the answers

What is the free energy change (ΔG) associated with the phosphorylation of ADP?

<p>The phosphorylation of ADP to form ATP is an endergonic reaction with a ΔG of +7.3 kcal under standard conditions.</p> Signup and view all the answers

In the context of cellular respiration, what is the significance of the reaction C6H12O6 + 6O2 → 6CO2 + 6H2O?

<p>This exergonic reaction releases 686 kcal of energy, indicating that glucose is oxidized to release energy.</p> Signup and view all the answers

What happens to a cell that reaches metabolic equilibrium?

<p>A cell at metabolic equilibrium is considered dead, unable to perform necessary chemical reactions.</p> Signup and view all the answers

Why are the phosphate bonds in ATP termed 'high-energy bonds'?

<p>The phosphate bonds in ATP are referred to as 'high-energy bonds' because breaking them releases significant energy, transitioning ATP into a state of lower energy.</p> Signup and view all the answers

How does energy coupling assist in cellular functions?

<p>Energy coupling allows cells to harness energy from exergonic reactions to drive endergonic reactions.</p> Signup and view all the answers

What is the role of ATP in mechanical work within cells?

<p>ATP powers mechanical work by providing the energy required for movements such as muscle contractions and the action of cilia.</p> Signup and view all the answers

How does cellular respiration contribute to ATP regeneration?

<p>Cellular respiration provides the energy needed to regenerate ATP from ADP and inorganic phosphate through exergonic reactions.</p> Signup and view all the answers

What does a high 𝚫G indicate about a system's stability?

<p>A high 𝚫G indicates an unstable system that is more likely to change toward a stable state.</p> Signup and view all the answers

How does temperature (T) influence 𝚫G in a reaction?

<p>Temperature contributes to 𝚫G through the term -T𝚫S, affecting spontaneity based on entropy changes.</p> Signup and view all the answers

What is the difference between spontaneous reactions and those that require catalysts?

<p>Spontaneous reactions occur without external input of energy, while catalysts, like enzymes, are required to lower the activation energy for reactions that would otherwise take much longer.</p> Signup and view all the answers

What conditions are standard for the given reaction of glucose breakdown?

<p>Standard conditions include 1M concentration of reactants/products, 25°C, and pH 7.</p> Signup and view all the answers

Define the term 'phosphorylated intermediate' in the context of energy transfer.

<p>A phosphorylated intermediate is a reactive molecule that has gained a phosphate group, facilitating its conversion into a product in energy-coupling reactions.</p> Signup and view all the answers

What role does activation energy (EA) play in chemical reactions?

<p>Activation energy is the initial energy needed to distort reactants into an unstable state, allowing chemical reactions to occur.</p> Signup and view all the answers

Explain the difference between chemical work, transport work, and mechanical work in cells.

<p>Chemical work involves endergonic reactions, transport work refers to moving substances against gradients, and mechanical work includes physical movements like muscle contractions.</p> Signup and view all the answers

Explain why ATP is considered a renewable resource in cellular processes.

<p>ATP is renewable because it can be regenerated from ADP and inorganic phosphate through energy-releasing reactions, particularly during cellular respiration.</p> Signup and view all the answers

Why is the term 'energy stored in bonds' considered misleading?

<p>The term is misleading because it suggests energy is inherently stored, whereas it's the potential energy released upon bond formation that is significant.</p> Signup and view all the answers

What is the standard free energy change (ΔG) for the hydrolysis of ATP?

<p>The standard free energy change (ΔG) for the hydrolysis of ATP is approximately -7.3 kcal/mol.</p> Signup and view all the answers

What distinguishes competitive inhibitors from noncompetitive inhibitors?

<p>Competitive inhibitors resemble the substrate and compete for the active site, while noncompetitive inhibitors bind to another part of the enzyme, altering its shape.</p> Signup and view all the answers

How do irreversible inhibitors like penicillin function?

<p>Irreversible inhibitors, like penicillin, covalently bond to enzymes, permanently blocking their activity.</p> Signup and view all the answers

Explain the concept of activation energy (EA) in enzyme-catalyzed reactions.

<p>Activation energy is the initial energy required to distort reactants into an unstable transitional state for a chemical reaction to occur.</p> Signup and view all the answers

What role does the active site play in enzyme function?

<p>The active site provides a specific location for substrate binding and catalytic activity, enabling the conversion of substrates into products.</p> Signup and view all the answers

Describe the induced fit model of enzyme activity.

<p>The induced fit model suggests that the active site undergoes a conformational change upon substrate binding, enhancing the fit between enzyme and substrate.</p> Signup and view all the answers

What happens to enzyme activity at high substrate concentrations?

<p>At high substrate concentrations, enzymes can become saturated, meaning all active sites are engaged and the reaction rate plateaus.</p> Signup and view all the answers

How do environmental factors influence enzyme activity?

<p>Environmental factors like temperature and pH can affect enzyme structure and function, impacting the rate of reaction.</p> Signup and view all the answers

What is meant by the term 'enzyme-substrate complex'?

<p>The enzyme-substrate complex refers to the intermediate formed when an enzyme binds to its substrate during a reaction.</p> Signup and view all the answers

Explain how enzymes lower activation energy.

<p>Enzymes lower activation energy by providing an alternative reaction pathway and stabilizing the transition state of the substrate.</p> Signup and view all the answers

Why is the concept of metabolic reversibility important in enzyme function?

<p>Metabolic reversibility allows enzymes to catalyze both forward and reverse reactions, depending on the substrate concentration and reaction conditions.</p> Signup and view all the answers

What kind of interactions hold the substrate in the active site?

<p>The substrate is typically held in the active site by weak bonds such as hydrogen and ionic bonds.</p> Signup and view all the answers

Contrast exergonic reactions with the hydrolysis of sucrose.

<p>Exergonic reactions release energy, while the hydrolysis of sucrose, despite being exergonic, does not occur spontaneously in the absence of an enzyme.</p> Signup and view all the answers

How do toxins like sarin act as irreversible inhibitors?

<p>Toxins like sarin bond covalently to specific amino acid R groups in enzymes, permanently inhibiting their function.</p> Signup and view all the answers

What determines the specificity of enzymes?

<p>The specificity of enzymes is determined by their structure, particularly the arrangement of amino acids in the active site.</p> Signup and view all the answers

Why is it important for enzymes to have a flexible structure?

<p>A flexible structure allows enzymes to adapt their shape for better substrate binding and catalytic efficiency.</p> Signup and view all the answers

What happens to the rate of enzyme activity when the enzyme is saturated?

<p>The only way to increase the rate of production is by adding more enzymes.</p> Signup and view all the answers

What is the transitional state of molecules in a chemical reaction?

<p>The transitional state is when molecules have absorbed sufficient energy to break unstable bonds.</p> Signup and view all the answers

How do temperature and pH affect enzyme activity?

<p>Temperature and pH influence the 3D structure of enzymes, which in turn affects their catalytic activity.</p> Signup and view all the answers

How do catalysts affect the activation energy of a reaction?

<p>Catalysts lower the activation energy, enabling the reactants to absorb the temperatures needed for a reaction at moderate conditions.</p> Signup and view all the answers

What is the optimal temperature range for most human enzymes?

<p>The optimal temperature range for most human enzymes is approximately 35-40°C.</p> Signup and view all the answers

What is the difference between a cofactor and a coenzyme?

<p>A cofactor is a non-protein molecule that assists enzyme activity, while a coenzyme is an organic cofactor.</p> Signup and view all the answers

How do competitive inhibitors affect enzyme activity?

<p>Competitive inhibitors resemble substrate molecules and block substrates from entering the active site.</p> Signup and view all the answers

What are the factors that influence the rate at which an enzyme converts substrate to product?

<p>The rate is influenced by substrate concentration, temperature, and pH levels.</p> Signup and view all the answers

What is the role of noncompetitive inhibitors?

<p>Noncompetitive inhibitors bind to a different site on the enzyme, causing a change in shape that reduces activity.</p> Signup and view all the answers

Explain the concept of 'induced fit' in enzymes.

<p>Induced fit describes how the active site of an enzyme changes shape when a substrate binds, enhancing the fit and facilitating the reaction.</p> Signup and view all the answers

What happens when enzymes become saturated?

<p>When saturated, all active sites of the enzyme are engaged, and the reaction rate can only increase with the addition of more enzymes.</p> Signup and view all the answers

Explain allosteric regulation in enzymes.

<p>Allosteric regulation involves molecules that bind to a site's regulatory region, altering the enzyme's activity.</p> Signup and view all the answers

What is cooperativity in enzyme function?

<p>Cooperativity amplifies the response of enzymes, making it easier for additional substrates to bind after one has bound.</p> Signup and view all the answers

Why do human enzymes typically have an optimal temperature around 35-40°C?

<p>This temperature range matches the normal body temperature, where enzyme activity is highest due to effective molecular collisions.</p> Signup and view all the answers

What role do cofactors play in enzyme activity?

<p>Cofactors assist enzymes in their catalytic activity, often facilitating electron transfer during reactions.</p> Signup and view all the answers

What is feedback inhibition in enzyme regulation?

<p>Feedback inhibition occurs when the end product of an enzyme-catalyzed reaction acts as an inhibitor to that enzyme.</p> Signup and view all the answers

Describe the significance of multienzyme complexes.

<p>Multienzyme complexes organize enzymes in a metabolic pathway to enhance efficiency and substrate transfer.</p> Signup and view all the answers

How do changes in pH affect enzyme activity?

<p>Changes in pH can alter the charge and shape of the enzyme, affecting its ability to bind to substrates.</p> Signup and view all the answers

What is the significance of the 'active site' in an enzyme?

<p>The active site is where substrate binding and the catalytic activity occur, often formed by a few key amino acids.</p> Signup and view all the answers

How do fluctuating concentrations of regulators affect enzyme activity?

<p>Fluctuating concentrations of inhibitors and activators create a dynamic response pattern in enzyme regulation.</p> Signup and view all the answers

Why is it important for enzymes to be regulated?

<p>Enzyme regulation prevents chaos in metabolic processes, allowing organisms to maintain stability and adapt to changes.</p> Signup and view all the answers

How does temperature influence the reaction rate of enzymes?

<p>Initially, increasing temperature raises the reaction rate by increasing molecular collisions, but after a certain point, it denatures the enzyme, reducing activity.</p> Signup and view all the answers

What are enzyme inhibitors and why are they important?

<p>Enzyme inhibitors are molecules that bind to enzymes to slow down or stop their activity, regulating metabolic pathways.</p> Signup and view all the answers

What factors can lead to a decrease in the rate of enzyme reaction at high temperatures?

<p>High temperatures can lead to thermal agitation that disrupts hydrogen and ionic bonds, destabilizing enzyme structure.</p> Signup and view all the answers

How can temperature shifts impact thermophilic bacteria's enzymes?

<p>Thermophilic bacteria have enzymes optimized for functioning at about 70°C, allowing them to thrive in hot environments.</p> Signup and view all the answers

What is the typical structure and significance of enzymes that end in '-ase'?

<p>Enzymes ending in '-ase' typically denote a specific function, such as sucrase acting on sucrose, indicating substrate specificity.</p> Signup and view all the answers

Explain how the 'R' groups of amino acids affect enzyme activity.

<p>The 'R' groups of amino acids in the active site interact directly with substrates, facilitating bond formation and breakage.</p> Signup and view all the answers

What is the role of allosteric regulation in enzyme activity?

<p>Allosteric regulation modifies enzyme activity by allowing regulatory molecules to bind and change the enzyme's shape, affecting its ability to catalyze reactions.</p> Signup and view all the answers

How do ATP and ADP function as regulators of enzymatic activity?

<p>ATP acts as an inhibitor when it binds to catabolic enzymes, reducing their activity, while ADP functions as an activator, promoting enzyme activity when ATP levels are low.</p> Signup and view all the answers

Explain the concept of cooperativity in enzymes.

<p>Cooperativity is a phenomenon where the binding of a substrate to one subunit of an enzyme increases the likelihood of additional substrates binding to the other subunits.</p> Signup and view all the answers

What happens during feedback inhibition?

<p>Feedback inhibition occurs when the product of an enzymatic reaction accumulates and binds to the enzyme, inhibiting its activity to prevent overproduction.</p> Signup and view all the answers

Describe the structure of allosteric enzymes.

<p>Allosteric enzymes typically consist of multiple subunits, each with its own active site, allowing for regulatory sites to influence the enzyme's overall activity.</p> Signup and view all the answers

What is a multienzyme complex and its significance?

<p>A multienzyme complex is a group of enzymes that work sequentially in a metabolic pathway, with the product of one enzyme serving as the substrate for the next.</p> Signup and view all the answers

How does oxygen binding affect hemoglobin's functionality?

<p>The binding of oxygen to one subunit of hemoglobin increases the affinity of the remaining subunits for oxygen, facilitating rapid oxygen uptake.</p> Signup and view all the answers

In the context of cellular respiration, where are the enzymes for the second and third stages located?

<p>The enzymes for the second and third stages of cellular respiration are found in multienzyme complexes located in different areas of the mitochondria.</p> Signup and view all the answers

Why is it important for enzymatic activity to be regulated?

<p>Enzymatic activity must be regulated to prevent disorder and ensure that metabolic processes respond appropriately to the needs of the cell.</p> Signup and view all the answers

What impact do fluctuating concentrations of regulators have on enzymes?

<p>Fluctuating concentrations of regulators create a dynamic response in enzymes, enabling them to adapt to varying cellular conditions.</p> Signup and view all the answers

What is Gibbs Free Energy and how is it symbolized?

<p>Gibbs Free Energy is the portion of a system's energy that can perform work and is symbolized by the letter 'G'.</p> Signup and view all the answers

Explain the relationship between entropy and spontaneous processes.

<p>Spontaneous processes tend to increase the total entropy of the universe despite local decreases in entropy within systems.</p> Signup and view all the answers

Define an exergonic reaction and its significance.

<p>An exergonic reaction releases free energy and has a negative ΔG, indicating that it is spontaneous and can perform work.</p> Signup and view all the answers

What is the significance of a reaction's ΔG value in determining its spontaneity?

<p>A negative ΔG value indicates that a reaction is spontaneous, while a positive ΔG suggests that the reaction is non-spontaneous.</p> Signup and view all the answers

Describe the concept of equilibrium in a biological system.

<p>Equilibrium is reached when forward and reverse reactions occur at the same rate, resulting in maximum stability and a ΔG at its lowest value.</p> Signup and view all the answers

How does energy flow in ecosystems according to the content?

<p>Energy typically enters ecosystems as light and exits as heat, following the thermodynamic principles.</p> Signup and view all the answers

What does the equation ΔG = ΔH - TΔS represent?

<p>This equation relates the change in Gibbs Free Energy (ΔG) to changes in enthalpy (ΔH) and entropy (ΔS) at a given temperature (T).</p> Signup and view all the answers

How do endergonic reactions differ from exergonic reactions?

<p>Endergonic reactions absorb energy and have a positive ΔG, making them non-spontaneous, while exergonic reactions release energy and have a negative ΔG.</p> Signup and view all the answers

What does it mean for a glucose molecule to be more unstable?

<p>A more unstable glucose molecule is easier to break down into simpler chemicals, thus releasing energy in exergonic reactions.</p> Signup and view all the answers

Why do cells need to prevent equilibrium to stay alive?

<p>Cells must prevent equilibrium by continuously importing and exporting reactants and products to perform metabolic functions and sustain life.</p> Signup and view all the answers

Explain how temperature affects ΔG in a biological system.

<p>Temperature (T) influences the ΔG by modifying the impact of entropy changes (ΔS), which can determine whether a process is spontaneous.</p> Signup and view all the answers

What happens to a reaction's ΔG value when it is pushed away from equilibrium?

<p>When a reaction is pushed away from equilibrium, its ΔG increases, making it less spontaneous.</p> Signup and view all the answers

How can the concept of 'islands of low entropy' be explained in the context of living organisms?

<p>Living organisms maintain low entropy through constant energy input and chemical transformations, existing within the larger context of an increasing universe entropy.</p> Signup and view all the answers

What does the second law of thermodynamics state regarding energy transformations?

<p>Every energy transfer or transformation increases the entropy of the universe.</p> Signup and view all the answers

How does entropy relate to molecular disorder?

<p>Entropy is the measure of molecular disorder or randomness, with more disorder indicating higher entropy.</p> Signup and view all the answers

What is a spontaneous process, and can you provide an example?

<p>A spontaneous process is one that leads to an increase in entropy without input of energy; an example is combustion.</p> Signup and view all the answers

Explain the difference between catabolic and anabolic pathways.

<p>Catabolic pathways break down complex molecules and release energy, while anabolic pathways build complex molecules from simpler ones and consume energy.</p> Signup and view all the answers

How does energy typically enter and exit an ecosystem?

<p>Energy typically enters an ecosystem as light and exits as heat.</p> Signup and view all the answers

Describe how entropy in the universe is most commonly manifested.

<p>Much of the entropy in the universe takes the form of heat and less ordered forms of matter.</p> Signup and view all the answers

What is bioenergetics, and what does it study?

<p>Bioenergetics is the study of how energy flows through living organisms.</p> Signup and view all the answers

What is the implication of the first law of thermodynamics?

<p>The first law of thermodynamics states that energy cannot be created or destroyed, only transferred or transformed.</p> Signup and view all the answers

How does physical degradation serve as a model for understanding entropy?

<p>Physical degradation, like the decay of a building over time, demonstrates an increase in entropy as molecules become more unorganized.</p> Signup and view all the answers

What is the significance of temperature difference for thermal energy utilization?

<p>Thermal energy can only be utilized when there is a temperature difference; otherwise, it only warms the system.</p> Signup and view all the answers

In what way can complex organisms evolve into simpler structures without violating the second law of thermodynamics?

<p>Complex organisms can evolve into simpler forms without violating the second law as long as the total entropy of the universe continues to increase.</p> Signup and view all the answers

Define chemical energy and its relevance in biological processes.

<p>Chemical energy is the potential energy of a chemical that can release energy through its bonds during a chemical reaction.</p> Signup and view all the answers

Describe how kinetic energy and potential energy relate to energy transformations in living organisms.

<p>Kinetic energy involves the energy of movement while potential energy is due to position; organisms transform these energy types during metabolic processes.</p> Signup and view all the answers

Flashcards

Metabolism

The entire set of chemical reactions in an organism.

Metabolic Pathway

A series of linked chemical reactions.

Catabolic Pathway

Metabolic pathway that breaks down molecules to release energy.

Anabolic Pathway

Metabolic pathway that builds molecules by consuming energy.

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Bioenergetics

Study of energy flow in living organisms.

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First Law of Thermodynamics

Energy cannot be created or destroyed, only transferred or transformed.

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Second Law of Thermodynamics

Every energy transfer increases disorder (entropy) in the universe.

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Chemical Energy

Potential energy stored in chemical bonds.

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Entropy

Measure of molecular disorder or randomness; the more disordered, the higher the entropy.

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Spontaneous Process

A process that increases the entropy of the universe and can occur without input energy.

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Energy

The capacity to cause change or do work.

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Kinetic Energy

Energy of motion

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Potential Energy

Energy stored by position.

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Thermal Energy

Energy associated with random movement of atoms or molecules.

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Light Energy

Energy from light waves.

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Entropy Increase

Spontaneous processes always increase the entropy of the universe, even if the system itself becomes more ordered.

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Free Energy

The portion of a system's energy that can perform work.

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Gibbs Free Energy

A thermodynamic function representing the free energy of a system, denoted by "G".

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𝚫G (Change in Free Energy)

The difference in free energy between the initial and final states of a system.

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Spontaneous Reactions

Reactions with a negative 𝚫G, meaning they release free energy and are energetically favorable.

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Equilibrium

A state of maximum stability where forward and reverse reactions occur at the same rate.

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Exergonic Reaction

A reaction that releases free energy, has a negative 𝚫G, and is spontaneous.

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Endergonic Reaction

A reaction that absorbs free energy, has a positive 𝚫G, and is not spontaneous.

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Metabolic Equilibrium

A state where an organism is no longer carrying out chemical reactions, signifying death.

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Open System

A system that exchanges matter and energy with its surroundings, like a living cell.

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Coupled Reactions

Reactions where the energy released from an exergonic reaction is used to drive an endergonic reaction.

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Energy in Bonds

The potential energy stored in chemical bonds is released when the bonds break and new bonds form.

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Standard Conditions

A set of defined conditions (1 M of each reactant and product, 25°C, pH 7) used to compare the energy changes in different reactions.

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What is ATP hydrolysis?

The breaking down of ATP into ADP and inorganic phosphate (Pi) by the addition of water, releasing energy.

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What does 'free energy' mean?

The energy available to do work in a system, considering both enthalpy (total energy) and entropy (disorder).

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What's the difference between exergonic and endergonic reactions?

Exergonic reactions RELEASE energy, having a negative ΔG, while endergonic reactions REQUIRE energy, having a positive ΔG.

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What is energy coupling?

The use of energy released from an exergonic reaction to drive an endergonic reaction.

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What is phosphorylation?

The addition of a phosphate group to a molecule, usually a reactant.

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What is a phosphorylated intermediate?

A molecule that has been covalently bonded to a phosphate group through phosphorylation.

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How does ATP help drive endergonic reactions?

ATP hydrolysis releases energy, which is used to phosphorylate reactants, creating a phosphorylated intermediate with enough energy to drive the endergonic reaction.

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What's the significance of the -7.3 kcal/mol energy release in ATP hydrolysis?

This is the standard free energy change (ΔG) of ATP hydrolysis, indicating the amount of energy released per mole of ATP.

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Why is ATP hydrolysis considered 'spontaneous'?

The ΔG of ATP hydrolysis is negative, meaning the reaction releases energy and is thermodynamically favorable, though it may not occur instantly.

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How is ATP a renewable resource?

ATP can be regenerated from ADP and Pi by using energy from exergonic reactions like cellular respiration.

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How do enzymes affect reaction rates?

Enzymes speed up reactions by lowering the activation energy (EA) required to start the reaction.

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What is activation energy (EA)?

The amount of energy needed to start a chemical reaction, by distorting reactants into an unstable state.

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How is the activation energy (EA) related to the reaction rate?

Lower EA means a faster reaction rate, because less energy is required to reach the transition state.

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Explain the role of enzymes in metabolism.

Enzymes catalyze (speed up) metabolic reactions by reducing activation energy, allowing reactions to occur at physiological temperatures.

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What is the relationship between free energy change (ΔG) and the spontaneity of a reaction?

A negative ΔG indicates an exergonic reaction, which is spontaneous and releases energy. A positive ΔG indicates an endergonic reaction, which requires energy and is non-spontaneous.

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Reversible Inhibitors

Inhibitors that bind to enzymes through weak bonds, allowing them to detach and re-bind, unlike irreversible inhibitors.

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Competitive Inhibitors

Inhibitors that resemble the substrate and compete for binding to the enzyme's active site, slowing down the reaction.

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Noncompetitive Inhibitors

Inhibitors that bind to a different site on the enzyme, causing a conformational change that disrupts its activity.

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Irreversible Inhibitors

Inhibitors that permanently bind to the enzyme, often through covalent bonds, disabling its activity.

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Sarin

A toxic, irreversible inhibitor that covalently binds to enzymes, disrupting their function. Often used as a chemical weapon.

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Penicillin

An irreversible inhibitor that targets enzymes in bacteria involved in cell wall synthesis, effectively killing bacteria.

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Activation Energy (Ea)

The minimum amount of energy that reactants must absorb to reach a transition state and start a chemical reaction.

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What is the 'Transitional State' in a chemical reaction?

The unstable, high-energy state that reactants must reach before they can transform into products.

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Catalyst

A substance that speeds up a chemical reaction without being consumed, by lowering the activation energy.

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Enzyme

A biological catalyst, typically a protein, that speeds up specific chemical reactions in living organisms.

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Substrate

The specific molecule that an enzyme binds to and acts upon in a chemical reaction.

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Enzyme-Substrate Complex

The temporary intermediate formed when an enzyme binds to its substrate during a chemical reaction.

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Active Site

The specific region on an enzyme where the substrate binds and the catalytic reaction occurs.

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Induced Fit Model

The theory that the active site of an enzyme changes shape slightly when the substrate binds, creating a more precise fit.

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Activation Energy

The minimum amount of energy that reactants must absorb before a chemical reaction can begin. It's like the energy needed to push a boulder over a hill.

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Transitional State

The unstable, high-energy state that molecules reach during a reaction, where bonds are breaking and forming. It's like a molecule in between its starting and ending point.

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Induced Fit

The change in shape of the active site of an enzyme as a substrate binds to it, causing it to fit more snugly. It's like a glove that fits snugly after putting it on.

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Cofactor

A non-protein molecule that helps an enzyme function. It's like a helper for the enzyme.

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Enzyme Inhibitor

A molecule that slows down or stops an enzyme's activity. It's like a blocker that stops an enzyme from working.

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Saturated Enzymes

When so much substrate is present that all the enzyme active sites are occupied, so the reaction rate plateaus. It's like a full restaurant where there are no more tables.

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Optimal Temperature

The temperature at which an enzyme works most effectively. It's like the perfect temperature for an enzyme to function.

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Optimal pH

The pH at which an enzyme works most effectively. It's like the perfect acidity/basicity for an enzyme to function.

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Thermophilic Bacteria

Bacteria that thrive in extremely hot environments, such as hot springs. They have enzymes that function at high temperatures.

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𝚫G

Change in Gibbs Free Energy, representing the energy available to do work in a system. A negative 𝚫G indicates a spontaneous process.

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What's the energy currency of cells?

Adenosine Triphosphate (ATP)

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How does ATP store and release energy?

ATP stores energy in the bonds between its phosphate groups. When a phosphate group is broken off (hydrolysis), energy is released, and ATP becomes ADP.

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What are the three major types of cellular work?

  1. Chemical work: using energy to fuel endergonic reactions (e.g., building polymers)
  2. Transport work: moving substances across membranes against concentration gradients
  3. Mechanical work: movement of cilia, muscle contraction, chromosome movement
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Energy Coupling

The process where energy released from exergonic reactions is used to drive endergonic reactions.

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What happens to a cell that reaches metabolic equilibrium?

It dies. Living cells must continuously perform chemical reactions to maintain life.

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How do cells avoid reaching equilibrium?

They constantly import reactants and export products, preventing the buildup of products and depletion of reactants.

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Why is the equation 𝚫G=𝚫H-T𝚫S important?

It tells us if a reaction is spontaneous or not. A negative 𝚫G means the reaction will occur naturally.

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What is 'standard conditions' in biochemistry?

A reference point for measuring energy changes. Standard conditions are 1M of reactants and products, 25°C, and pH 7.

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What does '𝚫H' represent?

Change in enthalpy, the total energy of a system. It's a measure of heat energy involved in a reaction.

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'High Energy Bonds' - True or False?

False. The phrase is misleading. Phosphate bonds in ATP are not unusually strong. The high energy comes from the difference in energy between reactants and products.

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What is the connection between exergonic and endergonic reactions?

They are opposite processes. Exergonic reactions release energy, while endergonic reactions require energy. Often, an exergonic reaction can fuel an endergonic reaction.

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Allosteric Regulation

Enzyme regulation where a non-covalently bound molecule alters the enzyme's shape, affecting its activity.

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Allosteric Enzyme

An enzyme with multiple subunits that can exist in active and inactive forms, regulated by binding of activators or inhibitors.

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Activator

A molecule that binds to an allosteric enzyme, stabilizing its active shape.

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Inhibitor

A molecule that binds to an allosteric enzyme, stabilizing its inactive shape.

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Cooperativity

A mechanism where binding of one substrate molecule to an enzyme makes it easier for subsequent substrates to bind.

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Hemoglobin

A protein in blood that carries oxygen, exhibiting cooperativity by binding oxygen more readily as more oxygen is bound.

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Feedback inhibition

A type of enzyme regulation where the product of a metabolic pathway acts as an inhibitor of an enzyme earlier in the pathway.

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Multienzyme Complex

A group of enzymes involved in a metabolic pathway organized together, often within specific cellular locations.

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Where are cellular respiration enzymes found?

Enzymes for the second and third stages of cellular respiration are found in multienzyme complexes located in different areas of the mitochondria.

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How is enzymatic activity regulated?

Enzymatic activity is regulated to prevent chaos within the organism, and this is often achieved through allosteric regulation, feedback inhibition, and multienzyme complexes.

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Enzyme Saturation

When all active sites of enzymes are occupied by substrate molecules, increasing substrate concentration won't increase the reaction rate.

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Ideal Temperature for Enzymes

Each enzyme has a specific temperature where its activity is highest, beyond which its structure is disrupted and activity decreases.

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Thermophilic Bacteria and Temperature

Bacteria that thrive in hot environments have enzymes with optimal temperatures much higher than those found in humans.

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Enzyme's Ideal pH

Every enzyme has a particular pH where its structure and activity are optimal.

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Cofactors in Enzymatic Activity

Non-protein molecules that assist enzymes in their catalytic activity, often involved in electron transfer.

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Reversible vs. Irreversible Inhibitors

Reversible inhibitors bind weakly, allowing the enzyme to regain function. Irreversible inhibitors bind permanently, disabling the enzyme.

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Allosteric Regulation: Activator

A regulatory molecule that binds to an allosteric site on an enzyme, stabilizing its active conformation.

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Allosteric Regulation: Inhibitor

A regulatory molecule that binds to an allosteric site on an enzyme, stabilizing its inactive conformation.

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Cooperativity in Enzymes

A mechanism where the binding of one substrate molecule to an enzyme increases the affinity of the enzyme for subsequent substrate molecules.

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Study Notes

Metabolism and Metabolic Pathways

  • Metabolism is the sum of all chemical reactions in an organism.
  • Metabolic pathways are sequences of enzyme-catalyzed reactions leading to a specific product.
  • Catabolic pathways break down complex molecules, releasing energy (e.g., cellular respiration).
  • Anabolic pathways build complex molecules from simpler ones, consuming energy (e.g., protein synthesis).
  • Bioenergetics studies energy flow in living organisms.

Thermodynamics and Energy

  • Thermodynamics studies energy transformations.
  • The First Law of Thermodynamics states that energy cannot be created or destroyed, only transferred or transformed.
  • The Second Law of Thermodynamics states that every energy transfer increases the entropy (disorder) of the universe.
  • Entropy is a measure of disorder.
  • Spontaneous processes increase entropy; non-spontaneous processes decrease entropy, requiring energy input.
  • Organisms are islands of low entropy; converting light energy into other forms.

Free Energy and Equilibrium

  • Free energy is the portion of a system's energy that can perform work.
  • Gibbs Free Energy (𝚫G) describes the change in free energy during a reaction or process.
  • 𝚫G = 𝚫H - T𝚫S, where 𝚫H is enthalpy (total energy), T is absolute temperature, and 𝚫S is entropy.
  • Spontaneous reactions have a negative 𝚫G; they release free energy.
  • Exergonic reactions release free energy (𝚫G < 0).
  • Endergonic reactions absorb free energy (𝚫G > 0).
  • Equilibrium is a state of maximum stability where forward and reverse reactions are balanced.

ATP and Energy Coupling

  • ATP (adenosine triphosphate) is a crucial energy currency in cells.
  • The hydrolysis of ATP releases energy (-7.3 kcal/mol), used to drive endergonic reactions.
  • ATP is regenerated through endergonic phosphorylation processes.
  • Energy coupling links exergonic and endergonic reactions.

Enzymes and Catalysis

  • Enzymes are biological catalysts that speed up chemical reactions.
  • Enzymes lower the activation energy (Ea) needed for a reaction to occur.
  • A substrate binds to the enzyme's active site, forming an enzyme-substrate complex.
  • Enzyme activity is influenced by temperature, pH, and cofactors.
  • Enzymes can be regulated through allosteric regulation and feedback inhibition.
  • Allosteric regulation involves regulatory molecules binding to allosteric sites, changing enzyme shape.

Enzyme Regulation

  • Feedback inhibition occurs when a product of a metabolic pathway inhibits an enzyme earlier in the pathway.
  • Multienzyme complexes organize enzymes for efficient sequential reactions.
  • Cooperativity amplifies enzyme response to a substrate through conformational changes.
  • Enzymes are specific for substrates to maximize controlled and efficient reactions.

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Test your knowledge on metabolism and metabolic pathways, including catabolic and anabolic processes. Explore the principles of thermodynamics and energy transformations, focusing on the laws governing energy transfer and entropy. This quiz will challenge your understanding of bioenergetics and the underlying processes influencing living organisms.

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