Matrices: Linear Algebra

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Questions and Answers

In a monohybrid cross of true-breeding purple and white flowered pea plants, what phenotypes will be observed in the $F_1$ generation?

  • All plants have purple flowers. (correct)
  • 50% purple, 50% white flowers.
  • 75% purple, 25% white flowers.
  • All plants have white flowers.

What is the term for the offspring resulting from a cross between two plants with different varieties?

  • F2 generation.
  • True-breeding.
  • P generation.
  • Hybrid. (correct)

What term describes the genetic makeup of an organism?

  • Genotype. (correct)
  • Phenotype.
  • Trait.
  • Allele.

If a black dog (Bb) is testcrossed with a chocolate dog (bb), what percentage of the offspring would be expected to have a chocolate coat?

<p>50% (B)</p> Signup and view all the answers

In genetics, what do we call the alternative versions of a gene?

<p>Alleles. (D)</p> Signup and view all the answers

Why did Mendel perform a dihybrid cross, involving two separate traits?

<p>To understand the relationship between how two separate traits are inherited. (C)</p> Signup and view all the answers

What is the phenotypic ratio observed by Mendel in the $F_2$ generation of a dihybrid cross when both parents are heterozygous for both traits (RrYy x RrYy)?

<p>9:3:3:1 (B)</p> Signup and view all the answers

Why is it important for geneticists to identify true-breeding organisms?

<p>To make sure they consistently produce offspring with the same traits. (C)</p> Signup and view all the answers

If a plant with the genotype Ss is crossed with a plant with the genotype ss, what proportion of the offspring would be expected to have the recessive phenotype?

<p>50% (C)</p> Signup and view all the answers

A true-breeding organism is always:

<p>Homozygous. (C)</p> Signup and view all the answers

Flashcards

Dihybrid Cross

A cross involving two separate traits.

Principle of Independent Assortment

Each pair of alleles segregates independently during gamete formation (meiosis).

Testcross

The mating between an individual of unknown genotype and a homozygous recessive individual.

Phenotype

An organism's observable, physical traits (e.g., purple flowers, wrinkled seeds, lactose intolerance).

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Genotype

An organism's genetic makeup.

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Homozygous Dominant

Two uppercase letters (SS).

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Homozygous Recessive

Two lowercase letters (ss).

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Heterozygous

One upper and one lowercase letter (Ss).

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Alleles

Alternative forms of genes.

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Homozygous

A true breeding organism with 2 identical alleles.

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Study Notes

Algèbre linéaire

Matrices

  • A matrix is a table of numbers with $m$ rows and $n$ columns.
  • Elements are denoted as $a_{ij}$, where $i$ represents the row index and $j$ represents the column index.

Examples

  • Example Matrix A = [[1, 2], [3, 4]].
  • Example Matrix B = [[1, 2, 3], [4, 5, 6]].
  • Example Matrix C = [[1], [2], [3]].

Operations

  • Addition of matrices $A + B$ is performed element-wise: $[a_{ij} + b_{ij}]$, only if $A$ and $B$ have the same dimensions.
  • Scalar multiplication $\lambda A$ is performed by multiplying each element of $A$ by the scalar $\lambda$: $[\lambda a_{ij}]$.
  • Multiplication of matrices $(AB){ij}$ is computed as $\sum{k=1}^{n} a_{ik}b_{kj}$, requiring the number of columns in $A$ to equal the number of rows in $B$.

Properties

  • Matrix addition is associative: $(A + B) + C = A + (B + C)$.
  • Matrix addition is commutative: $A + B = B + A$.
  • Scalar multiplication distributes over matrix addition: $\lambda(A + B) = \lambda A + \lambda B$.
  • Scalar addition distributes over scalar multiplication of a matrix: $(\lambda + \mu)A = \lambda A + \mu A$.
  • Matrix multiplication is associative: $A(BC) = (AB)C$.
  • Matrix multiplication distributes over matrix addition: $A(B + C) = AB + AC$ and $(A + B)C = AC + BC$.

Transposition

  • The transpose of a matrix $A$, denoted $A^T$, swaps rows and columns.
  • The element at $(A^T){ij}$ equals $a{ji}$.
  • $(A + B)^T = A^T + B^T$.
  • $(\lambda A)^T = \lambda A^T$.
  • $(AB)^T = B^T A^T$.

Special Matrices

  • A square matrix has an equal number of rows and columns ($m = n$).
  • A diagonal matrix has non-zero elements only on the main diagonal ($a_{ij} = 0$ if $i \neq j$).
  • The identity matrix $I_n$ is a square matrix with 1s on the main diagonal and 0s elsewhere.
  • A symmetric matrix is equal to its transpose: $A^T = A$.
  • An antisymmetric matrix is the negative of its transpose: $A^T = -A$.

Systèmes linéaires

Definition

  • A system of $m$ linear equations with $n$ unknowns is defined.

Matrix form

  • The matrix is in the form $Ax = b$, where $A = [a_{ij}]$, $x = \begin{bmatrix} x_1 \ x_2 \ \vdots \ x_n \end{bmatrix}$, $b = \begin{bmatrix} b_1 \ b_2 \ \vdots \ b_m \end{bmatrix}$

Resolution

  • Gauss elimination
  • Back substitution

Solutions

  • Unique
  • Infinite
  • None

3. Déterminants

Définition

  • The determinant of a square matrix A, noted det(A) or |A|, is a scalar.

Calcul

  • 2 x 2: det [[a, b], [c, d]] = ad - bc
  • 3 x 3: Sarrus rule
  • N x n: Expansion by row or column

Properties

  • Det(A^T) = det(A)
  • Det(AB) = det(A)det(B)
  • If A has null row or column, then det(A) = 0
  • If A has two identical rows or columns, then det(A) = 0
  • If A' is obtained from A by swapping two rows or columns, then det(A') = -det(A)
  • If A' is obtained from A by multiplying a row or column by a scalar $\lambda$, then det(A') = $\lambda$det(A)
  • If A' is obtained from A by adding a row (or column) a multiple of another row (or column), then det(A') = det(A)

Inversibility

  • A square matrix A is invertible if and only if det(A) $\neq$ 0. In this case, A^-1 = 1/det(A)adj(A), where adj(A) is the adjoint matrix A.

4. Espaces vectoriels

Definition

  • A vector space is a set V with two operations:
  • addition: u, v $\in$ V $\implies$ u + v $\in$ V
  • Multiplication by a scaler: $\lambda$ $\in$ $\mathbb{R}$, u $\in$ V $\implies$ $\lambda$u $\in$ V
  • satisfying certain properties (associativity, commutivity, existence of a neutral element an dan inverse)

Examples

  • $\mathbb{R}^n$
  • Polynomials
  • Matrices

Sous-espaces vectoriels

  • A subset W of V is a vector subspace if:
  • 0 $\in$ W
  • u, v $\in$ W $\implies u + $v $\in$ W
  • $\lambda \in \mathbb{R}, u \in W \implies \lambda u \in W$

Base et dimension

  • A base of V is a set of linearly independent vectors that generate V. The dimension of V is the number of vectors in a base.

5. Applications linéaires

Definition

  • An application f: V -> W is linear if:
  • f(u + v) = f(u) + f(v)
  • f($\lambda$u) = $\lambda f(u)$

Examples

  • Multiplication by a matrix
  • Derivation
  • Integration

Noyau et image

  • Core: ker(f) = {u $\in$ V | f(u) = 0} The sum Image: im(f) = {f(u) | u $\in$ V}

Théorème du rang

  • Dim(V) = dim(ker(f)) + dim(im(f))

6. Valeurs propres et vecteurs propres

Definition

  • An eigenvector of A is a vector v such that Av = $\lambda$v, where $\lambda$ is an eigenvalue of A.

Calcul

  • $\det(A - \lambda I) = 0$ (polynôme caractéristique)
  • Solve for $\lambda$
  • For each $\lambda$, resolve $(A - \lambda I)v = 0$ to find v

Diagonalisation

  • A is diagonalizable of there exists an invertible matrix P such that $P^{-1}AP = D$, where D is a diagonal matrix. The columns of P are the eigenvectors of A.

Nature-Inspired Optimization Algorithm

Introduction

  • Nature-Inspired Optimization Algorithms (NIOA) are computational methods of problem resolution inspired by nature
  • Nature shows a rich repertoire of strategies to resolve complex optimization problems

What are Optimization Algorithms

  • Optimization algorithms are computatational procedures designed to find the best possible solution for a given problem, among a possible list of solutions
  • Optimization problems arise in engineering, economics, computer science, operations research

Why be nature-inspired

  • Nature, through millions of evoluation, has refined efficient and robust solutions to complex problems
  • NIOAs are inspired by natural phenomena, the evolution biological, the behavior of swarms and laws physics to develop algorithms optimization of the effectiveness

Types of Nature-Inspired Optimization Algorithms

Evolutionary Algorithms

  • Algorithm inspired by the principles of natural selection and genetics, algorithms evolutionary instruments employ mechanisms such as reproduction, mutation, and recombination evolve to a population of candidate solutions over time.

Exemples

  • Genetic Algorithm (GA)
  • Evolution Strategies (ES)
  • Genetic Programming (GP)

Algoritmos basados en el comportamiento de enjambres

  • These algorithms imitate animal social collective behavior, like ants, bees and birds to solve problems optimization

Ejemplos

  • Optimization by a colony of ants (Ant Colony Optimization, ACO)
  • Optimization by a swarm of particles (Particle Swarm Optimization, PSO)
  • Algoithm of the colony of artificial bees (Artificial Bee Colony Algorithm, ABC)

Other Alogrithms Inspired in Nature

  • Simulated Annealing (SA): Simulated the process of metal cooling to find the global minimum of an objective function
  • Harmony Search, HS: Inspired by the process of musical improvisation to find optimum solutions
  • Optimization based in gravitational research (Gravitational Search Algorith, GSA): Based on the law of gravity and the mecanics newtonian

Applications of NIOA

  • NIOA's demonstrated to be eficaces to resolve a wide rang of problems of optimization in differents fields. The common aplications are:
  • Engineering: Structure designs, Route optimization, System control
  • Computer Sciences: Machine learning, data mining, artificial vision
  • Economy and finances: Optimization of portfolio. Market prediction
  • Operative investigation: Task programming, logistics, Inventory management

Advantages and disadvantages

Advantages

  • Flexibility: Can be applied to a wide rang of problems or optimization, including an objective unction not differentiable, not convex or bad
  • Robustness: Are less sencible to optimal locals in comparation with algoriths of optimization of the traditional
  • Paralelization: could it implemented easely in parallel architectures to accelerate the process optimization

Disadvantages

  • Adjustment of parameters: Requires an ajustment careful with the parameters to get a perfomance optimum
  • slow convergence: In some cases, they can verge slowly into the optimal solution
  • Lack of guarantee optimal They don't garantizated to find the solution optimum global in all the cases

Conclusion

  • The NIOA's offer an apporach promisor to resolve problems of optimization complex in diversity domains
  • Its flexibility, robustnes and capability of paralelization convert it valued tool to broach challenges of optimization of the real world

Descriptive Statistics

Introduction

  • Descriptive statistics is a branch of statistics that describes an abstract, and resumes data sets
  • Used to organice, present and analyse data for easy interpretation

Definition

  • Used to collect, orginace, abstract, present and analyse data with the objective of describing the principal caracteristics of a data set

Objectives

  • The principal objectives are:
  • Collect data: Get relevant information and representative of the population or the sample in study
  • Organice data: Classificate and structure the data, so it's easy to analyse
  • Abstract data: Calculate statistical measures that allow to represent the principal characteristics of the data
  • Present data: Show the data in a way that is understandable, using charts, graphics, etc
  • Analyse data: Identify patterns, trends and realtions in he data

Types of Statistical Variables

Qualitative Variable

  • Qualitative variabes are representation or atributions not nummeric
  • Qualitative nominal: Admits a order criteria.
  • Ex: Civil state, favourite color
  • Qualitative ordinal: There is a orden and hierarchy
  • Ex: Level of studies, degree of satisfaction

Variable Cuantitative

  • Quantitative Discrete: Toom a total values.
  • Ex: Number of kids, number
  • Cuantitative continous: can toom values inside a interval
  • Ex: High, weight

Measures of Central Tendency

  • Are values that represent the center in a data set

Arithmetic Media

  • Is the promedy in a data set. Its calculates adding all the values end divide to the result by the number of data.
  • $\qquad \bar{x} = \frac{\sum_{i=1}^{n} x_i}{n}$

Media

  • Is the value in the set
  • the number of data is par, mean of the data

Fashion

  • Is the data is more frequent

Measures of Dispensation

  • The measure of despesation indicate the degree of variablility and dispensation is a media tendesy
  • The measures used are standad and variarion coeffcient

Rang

  • The rang is a differece between the value max y min in the set.
  • $\qquad R = x_{max} - x_{min}$

Variance

  • The sample variant is calculated by calculating the sums, devided and the mean
  • $ s^2 = \frac{\sum_{i=1}^{n} (x_i - \bar{x})^2}{n-1}$
  • Population Variants:
  • $\qquad \sigma^2 = \frac{\sum_{i=1}^{N} (x_i - \mu)^2}{N}$

Standar Devision

  • The deviation standar is the cuadratic coefficent in data in the originals the variance is calculated
  • Sample estandar diasion
  • $\qquad s = \sqrt{s^2} = \sqrt{\frac{\sum_{i=1}^{n} (x_i - \bar{x})^2}{n-1}}$
  • Sample estandar diasion
  • $\qquad \sigma = \sqrt{\sigma^2} = \sqrt{\frac{\sum_{i=1}^{N} (x_i - \mu)^2}{N}}$

Variation Coeffcient

  • The variation coeffcient is a measure that use standart devasion
  • $\qquad CV = \frac{\sigma}{\mu} \cdot 100%$ (Población)
  • $\qquad CV = \frac{s}{\bar{x}} \cdot 100%$ (Muestra)

Tablas de Frecuencia

Types of Freceency

  • Frequency Absoluta ($f_i$): The number of times it appears in the data
  • Relative frecuency ($h_i$): The porpotion of the value it apears. devide the number $\qquad h_i = \frac{f_i}{n}$
  • acumulado
  • relativa acumulada

Chapter 2 - Vector Spaces

2.1 Definition 2.1.1 - Internal Composition Law

  • Let E be a non-empty set.
  • An internal composition law (LCI) on E is an application from $E \times E$ to $E$, mapping $(x, y)$ to $x * y$.

2.1.2 (Group)

  • A group is a set G with an internal composition law *, satisfying these properties:
    • Associativity: For all x, y, z in G, $(x * y) * z = x * (y * z)$.
    • Existence of a neutral element: There exists e in G such that for all x in G, $x * e = e * x = x$.
    • Existence of an inverse: For all x in G, there exists $x^{-1}$ in G such that $x * x^{-1} = x^{-1} * x = e$.

2.1.3 (Commutative Group)

  • A group (G, *) is commutative or abelian if the internal composition law * is commutative, meaning that for all x, y in G: $x * y = y * x$.

2.1.4 (External Compostion Law)

  • Let K be a field and E a non-empty set.
  • External composition Law

2.1.5 (Vector Space)

  • Let K be a commutative field and E a non-empty set. E is a vector space over K, if E has an internal composition law + and an external composition with operators in K, denoted by ., satisfying the following properties:
    • (E, +) is a commutative group.
    • For all $\lambda, \mu \in K$, for all $x \in E$: $(\lambda + \mu). x = \lambda. x + \mu. x$.
    • For all $\lambda \in K$, for all $x, y \in E$: $\lambda. (x + y) = \lambda. x + \lambda. y$.
    • For all $\lambda, \mu \in K$, for all $x \in E$: $(\lambda \mu). x = \lambda. (\mu. x)$.
    • For all $x \in E: 1. x = x$, where 1 is the neutral element for multiplication in K.
  • Elements of E are called vectors, and elements of K are called scalars.

Physics

Mechanics

  • Rectilinear motion.
  • Motion in a plane.
  • Newton's laws of motion.
  • Work, energy, and power.
  • System of particles.
  • Rotational motion.
  • Gravitation.
  • Mechanical properties of solids.
  • Mechanical properties of fluids.
  • Thermal properties of matter.
  • Thermodynamics.
  • Kinetic theory.

Oscillations and Waves

  • Oscillations.
  • Waves.

Electrostatics

  • Electric charges and fields.
  • Electrostatic potential and capacitance.

Current Electricity

  • Current electricity.

Magnetic Effects of Current and Magnetism

  • Moving charges and magnetism.
  • Magnetism and matter.

Electromagnetic Induction and Alternating Currents

  • Electromagnetic induction.
  • Alternating currents.

Electromagnetic Waves

  • Electromagnetic waves.

Optics

  • Ray optics and optical instruments.
  • Wave optics.

Modern Physics

  • Dual nature of radiation and matter.
  • Atoms.
  • Nuclei.
  • Semiconductor electronics involving materials, devices, and simple circuits.

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