12 Questions
What can paired reads yield evidence for?
Structural events
How is inferred insert size used to detect structural variants?
Detect deletions and insertions
What do alignment coloring options help highlight based on inferred insert size and pair orientation?
Structural events
How does the orientation of paired reads reveal structural events?
Identifying translocations
What can paired-end sequencing detect besides deletions and insertions?
Inter-chromosomal rearrangements
What type of genomic events can alignment coloring options help highlight?
Structural variations
What type of information/data would be important to put in a cancer database?
Information/data about the project
What is the purpose of the Integrative Genomics Viewer (IGV)?
To explore large genomic datasets with an intuitive interface
What does GDC stand for in the context of cancer research?
Genomic Data Commons
Why is information/data about the tumor important for a cancer database?
It helps in understanding the characteristics of the tumor
What type of information/data does ICGC DCC provide?
Information/data about cancer genomes
Learn about what information and data need to be included in a cancer database for bioinformatics analysis. Understand the crucial elements such as patient information, tumor data, sample collection details, extraction methods, sequencing data, analysis results, and interpretations.
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