Intro to Machine Learning

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Questions and Answers

Which of the following describes a monophyletic group?

  • A group of species that share a trait due to convergent evolution, not a shared ancestor.
  • A unit of evolution containing a common ancestor and all of its descendants. (correct)
  • A common ancestor and some, but not all, of its descendants.
  • Two species that share a trait due to convergent evolution.

In a phylogenetic tree, what does a node represent?

  • The shared ancestor of the entire tree.
  • A point where speciation events occurred. (correct)
  • The evolutionary history of a taxon.
  • Taxon that is depicted by the tree.

During adaptive radiation, what primarily drives the rapid diversification of species?

  • Availability of unexploited resources or a new adaptation. (correct)
  • A widespread disease that affects all species equally.
  • Limited availability of resources and habitats.
  • The stability of environmental conditions over long periods.

Which of the following characteristics is unique to archaea compared to bacteria and eukaryotes?

<p>Unique methods of obtaining food and energy. (C)</p> Signup and view all the answers

What is the significance of transitional fossils in understanding the history of life?

<p>They show evolutionary steps and changes from ancestral to descendant groups. (B)</p> Signup and view all the answers

What is the role of the mycelium in fungi?

<p>To facilitate efficient nutrient absorption due to its large surface area. (B)</p> Signup and view all the answers

How do angiosperms facilitate reproduction in diverse environments?

<p>Through enclosed seeds with protective coatings. (D)</p> Signup and view all the answers

Which of the following is an example of convergent evolution?

<p>Two species developing similar traits independently due to similar environmental pressures. (C)</p> Signup and view all the answers

What is the primary ecological role of fungi in ecosystems?

<p>To decompose organic material and recycle nutrients. (B)</p> Signup and view all the answers

What feature differentiates vascular plants from their non-vascular ancestors?

<p>Specialized cells for water and nutrient transport. (D)</p> Signup and view all the answers

What is the significance of the endosymbiotic theory in the evolution of eukaryotes?

<p>It explains the origin of mitochondria and chloroplast (A)</p> Signup and view all the answers

How does genetic material get packed in viruses?

<p>It is packed within a protein capsid. (C)</p> Signup and view all the answers

Which of the following characterizes a mass extinction event?

<p>A significant reduction in biodiversity over a relatively short time. (D)</p> Signup and view all the answers

What is the primary function of mycorrhizae in plant-fungal relationships?

<p>To provide plants with nutrients and water in exchange for carbohydrates. (D)</p> Signup and view all the answers

Eukarya are considered 'chimeras' because they share characteristics with which two domains?

<p>Archaea and Bacteria (B)</p> Signup and view all the answers

How does the host cell contribute to the formation of enveloped viruses?

<p>The host cell's membrane becomes the viral envelope as the virus buds off. (A)</p> Signup and view all the answers

Which process is essential for expanding on Eukaryotes?

<p>Reduction division (C)</p> Signup and view all the answers

Which traits are shared by multiple taxa and can be explained by common ancestry?

<p>Homologous Structures (B)</p> Signup and view all the answers

Which of the following traits helps classify viruses?

<p>The way they infect. (C)</p> Signup and view all the answers

What is true of Algae?

<p>Algae live in diverse environments. (A)</p> Signup and view all the answers

Flashcards

Phylogenetic Tree Tips

Taxon depicted by a phylogenetic tree.

Phylogenetic Tree Nodes

Points on a phylogenetic tree where speciation events occurred.

Phylogenetic Tree Branches

Represents the evolutionary history of a group of taxa.

Phylogenetic Tree Root

The shared ancestor of the entire phylogenetic tree.

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Monophyletic Group

A group including a common ancestor and all its descendants.

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Paraphyletic Group

Group with a common ancestor and only some of its descendants.

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Polyphyletic Group

Two species share a trait due to convergent evolution, not a shared ancestor.

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Macroevolution

Changes occurring over large time scales.

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Homologies

Traits shared by multiple taxa due to common ancestry.

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Fossils

Any trace of past organisms.

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Adaptive Radiation

Allows exploitation of more resources and habitats.

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Domains of Life

Eukaryotes, Archaea, and Bacteria

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Eukaryote

Has a nucleus and other membrane-bound organelles.

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Archaea

Often live in extreme environments; lack a nucleus.

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Mass Extinctions

Dies out in a short time due to short-term environmental changes.

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Archaeplastida

Photosynthetic eukaryotes including algae and land plants.

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Angiosperm Key Features

Holds structures where meiosis occurs.

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Mycelium

Multicellular fungi network of branching filaments.

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Fungi Role in Ecosystems

Breaks down organic material and releases nutrients.

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Mycorrhizae

Lives in association with plants supplying nutrients.

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Study Notes

What is Machine Learning?

  • Machine learning involves computers learning from data to identify patterns and predict outcomes.
  • It uses algorithms to learn without explicit programming.
  • It is used for tasks like spam filtering, product recommendations, credit risk assessment, fraud detection, and medical diagnosis.

Types of Machine Learning

  • Supervised learning algorithms learn from labeled data to predict target variables for new data.
    • Includes classification algorithms like Logistic Regression, SVM, Decision Trees, and Random Forest.
    • Also includes regression algorithms like Linear and Polynomial Regression.
  • Unsupervised learning uses unlabeled data to discover patterns and relationships.
    • Includes clustering algorithms like K-Means and Hierarchical Clustering.
    • Also includes dimensionality reduction via Principal Component Analysis (PCA).
    • Also includes association rule learning algorithms like Apriori and Eclat.
  • Reinforcement learning involves algorithms learning through interaction with an environment.
    • This method uses rewards or penalties to optimize the agent's behavior in tasks like game playing and robotics.

Machine Learning Process

  • Data is collected from various sources.
  • Data preprocessing involves cleaning and transforming data.
  • Feature engineering improves model performance by selecting, creating, and transforming features.
  • Model selection involves choosing an appropriate machine learning algorithm.
  • Models are trained using preprocessed data.
  • Evaluation uses appropriate metrics to assess performance.
  • Hyperparameter tuning optimizes model parameters.
  • Trained models are deployed to predict on new data.
  • Monitoring ensures continuous performance and retraining as needed.

Key Concepts

  • Features are input variables used for predictions.
  • The target variable is what the model aims to predict.
  • A model mathematically represents relationships between features and the target variable.
  • Training data is used to train the model.
  • Validation data evaluates model performance during training.
  • Test data evaluates the final model’s performance on unseen data.
  • Overfitting: models perform poorly on new data due to learning the training data too well.
  • Underfitting: models are too simple to capture underlying patterns in the data.

Tools and Libraries

  • Python is frequently used for machine learning.
  • Scikit-learn is a library for various machine learning tasks.
  • TensorFlow is for deep learning.
  • Keras provides a high-level API for building neural networks.
  • PyTorch is another library for deep learning.
  • Pandas is used for data manipulation.
  • NumPy is used for numerical computing.
  • Matplotlib is used for data visualization.

Challenges

  • Data quality issues can negatively impact model performance.
  • Overfitting can cause models that are too complex to fail when generalizing to new data.
  • Interpretability challenges arise when understanding a model's decision-making process is difficult.
  • Scalability challenges occur when training and deploying models on large datasets becomes computationally expensive.

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