Human Genome Structure

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Questions and Answers

How many chromosomes do humans have?

  • 44
  • 46 (correct)
  • 48
  • 42

What percentage of the human genome consists of protein-coding genes?

  • 1-2% (correct)
  • 10-15%
  • 5-10%
  • 15-20%

What are non-coding regions of DNA previously referred to as?

  • Functional DNA
  • Codon DNA
  • Essential DNA
  • Junk DNA (correct)

Which of the following is NOT a component of the human genome's chromosomal organization?

<p>Ribosomal RNA (A)</p> Signup and view all the answers

What are enhancers responsible for in gene expression?

<p>Increasing gene expression at a distance (B)</p> Signup and view all the answers

What is the primary organization of genes within the human genome?

<p>Exons and introns (C)</p> Signup and view all the answers

What significant role does non-coding DNA play according to recent research?

<p>Regulates gene expression and cellular processes (C)</p> Signup and view all the answers

What is the approximate number of protein-coding genes in the human genome?

<p>20,000 to 25,000 (A)</p> Signup and view all the answers

What is the primary function of telomeres?

<p>To protect the ends of chromosomes from degradation (D)</p> Signup and view all the answers

How much of their DNA do humans share with chimpanzees?

<p>Approximately 98-99% (D)</p> Signup and view all the answers

What is primarily responsible for the differences in phenotypic traits between humans and chimpanzees?

<p>Differences in gene regulation and non-coding sequences (C)</p> Signup and view all the answers

Which gene is associated with language abilities in humans?

<p>FOXP2 (D)</p> Signup and view all the answers

What is the approximate size of the human genome in base pairs?

<p>3.2 billion (C)</p> Signup and view all the answers

What is a key function of alternative splicing in the human genome?

<p>To allow a single gene to code for multiple protein variants (A)</p> Signup and view all the answers

Which of the following species has a genome significantly larger than that of humans?

<p>Ferns like Ophioglossum reticulatum (B)</p> Signup and view all the answers

What characterizes monogenic traits?

<p>They are controlled by a single gene. (A)</p> Signup and view all the answers

Which statement about polygenic traits is true?

<p>They involve multiple genes and environmental interactions. (A)</p> Signup and view all the answers

What is required for a recessive mutation to manifest as a disease?

<p>Both copies of the gene must be mutated. (B)</p> Signup and view all the answers

How did the Human Genome Project contribute to genomics research?

<p>It mapped the entire human genome, providing a reference sequence. (D)</p> Signup and view all the answers

Which project aimed to catalogue human genetic variation across different populations?

<p>The 1000 Genomes Project (D)</p> Signup and view all the answers

What has the ENCODE project significantly advanced our understanding of?

<p>Non-coding DNA and gene regulation (B)</p> Signup and view all the answers

Which of the following is a consequence of gene-environment interaction?

<p>Diet can exacerbate genetic predisposition to obesity. (C)</p> Signup and view all the answers

Which describes dominant mutations?

<p>They can lead to disease with one mutated gene copy. (B)</p> Signup and view all the answers

What is the primary role of regulatory elements in non-coding DNA?

<p>They determine the timing, location, and level of gene expression. (A)</p> Signup and view all the answers

Which of the following best describes long non-coding RNAs (lncRNAs)?

<p>They are involved in gene regulation and chromatin remodeling. (D)</p> Signup and view all the answers

What is the significance of transposons in the human genome?

<p>They can contribute to genetic diversity by moving and integrating into new locations. (A)</p> Signup and view all the answers

How do small non-coding RNAs, such as microRNAs, regulate gene expression?

<p>By binding to mRNA and preventing its translation. (A)</p> Signup and view all the answers

What roles do centromeres and telomeres play in maintaining genomic stability?

<p>Centromeres are primarily involved in chromosome segregation, while telomeres maintain chromosome stability. (D)</p> Signup and view all the answers

What mechanism is influenced by non-coding sequences and is vital for processes like genomic imprinting?

<p>Epigenetic mechanisms such as DNA methylation. (B)</p> Signup and view all the answers

What distinguishes retrotransposons from DNA transposons?

<p>Retrotransposons integrate into new locations after being transcribed into RNA. (C)</p> Signup and view all the answers

Why is a large percentage of human DNA categorized as non-coding?

<p>It plays essential roles in regulating gene expression and maintaining genome integrity. (C)</p> Signup and view all the answers

What role do transposons play in genome evolution?

<p>They promote genetic variability. (C)</p> Signup and view all the answers

How do introns contribute to protein diversity?

<p>Through alternative splicing. (C)</p> Signup and view all the answers

What is a characteristic of non-coding DNA in the context of evolution?

<p>It serves as an evolutionary buffer. (D)</p> Signup and view all the answers

Which type of mutation involves a single nucleotide change?

<p>Point mutation (A)</p> Signup and view all the answers

What are copy number variations (CNVs) associated with?

<p>Variations in the number of copies of specific DNA segments. (C)</p> Signup and view all the answers

Which of the following is NOT a source of genetic variation?

<p>Homologous recombination (A)</p> Signup and view all the answers

What effect do epigenetic variations have on gene expression?

<p>They influence gene expression without changing the DNA sequence. (B)</p> Signup and view all the answers

Which type of genetic variation is most commonly associated with eye color traits?

<p>Single nucleotide polymorphisms (SNPs) (B)</p> Signup and view all the answers

Flashcards

What is the human genome?

The entire set of DNA instructions that make up a human organism.

What are chromosomes?

Thread-like structures in the cell nucleus that carry genetic information.

How many chromosomes do humans have and what are they?

Humans have 46 chromosomes, arranged in 23 pairs. 22 of these pairs are autosomes (non-sex chromosomes), and the remaining pair are sex chromosomes (XX for females, XY for males).

What are exons?

Regions within a gene that code for proteins.

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What are introns?

Regions within a gene that do not code for proteins.

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What are gene families?

Groups of genes with similar functions that often arise from gene duplication during evolution.

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What are regulatory elements?

Sequences that regulate gene expression, such as promoters and enhancers.

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What is non-coding DNA?

Most of the human genome consists of non-coding DNA, performing important regulatory roles and cellular processes.

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Transposons

DNA segments that can move around the genome, contributing to genetic diversity by creating new gene functions and promoting adaptation.

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Alternative Splicing

A process where a single gene can produce multiple protein products through different combinations of coding and non-coding regions.

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Buffering and Evolutionary Flexibility

Non-coding DNA regions that provide flexibility for evolutionary changes without disrupting essential gene functions.

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Mutations

Permanent changes in the DNA sequence, which can occur from errors during replication or environmental factors.

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Single Nucleotide Polymorphisms (SNPs)

The most common type of genetic variation, involving a single nucleotide change. They contribute to diversity and influence traits like eye color and disease susceptibility.

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Copy Number Variations (CNVs)

Variations in the number of copies of specific DNA segments, which can influence susceptibility to cancer and other diseases.

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Epigenetic Variations

Reversible changes in gene expression without altering the DNA sequence. These changes can be influenced by the environment and are potentially heritable.

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Non-Coding Sequences

Regions of DNA that don't directly code for proteins but play vital roles in gene regulation, maintaining genome integrity, and facilitating evolution.

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Regulatory Elements

DNA sequences that regulate gene expression by controlling the timing, location, and level of protein production.

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Long Non-Coding RNAs (lncRNAs)

Long RNA molecules that don't code for proteins, involved in gene regulation, chromatin remodeling, and X-chromosome inactivation.

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Small Non-Coding RNAs

Small RNA molecules that regulate gene expression by binding to mRNA and blocking protein production.

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Retrotransposons

Transposons that are transcribed into RNA, reverse transcribed back into DNA, and then integrate into new genomic locations.

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DNA Transposons

Transposons that move directly as DNA elements and can introduce mutations when they insert into or near genes.

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Excess Genetic Material

The vast majority of human DNA (about 98-99%) that doesn't directly code for proteins but plays crucial roles in gene regulation, maintaining genome stability, and contributing to evolution.

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What are telomeres?

Protective caps at the ends of chromosomes that prevent degradation during cell division.

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What are centromeres?

Regions on chromosomes where they attach to the mitotic spindle, ensuring proper chromosome segregation during cell division.

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How does the human genome compare to other species?

The human genome contains approximately 3.2 billion base pairs, making it complex despite not being the largest genome. Humans share 98-99% of their DNA with chimpanzees, but differences in gene regulation and non-coding sequences account for significant phenotypic divergence.

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What are coding sequences (exons)?

The human genome has about 20,000-25,000 protein-coding genes, which encode proteins responsible for cellular functions.

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What is alternative splicing?

Alternative splicing refers to the process where a single gene can produce multiple protein variants by combining different exons in different ways. This increases protein diversity.

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How do telomeres relate to aging?

Telomeres shorten with age, contributing to cellular aging.

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What are key human-specific differences in the genome?

Genes involved in brain development, like FOXP2, show distinct variants in humans compared to other primates.

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How do human synaptic plasticity genes differ?

Humans have expanded synaptic plasticity genes, which play a role in higher-order cognitive functions like learning and memory.

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What are monogenic traits?

Traits determined by a single gene, where mutations can lead to distinct phenotypes or diseases. Example: Sickle cell anemia, caused by a mutation in the HBB gene.

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What are polygenic traits?

Traits influenced by multiple genes, often interacting with environmental factors. Examples: Height, intelligence, skin color.

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What are dominant mutations?

A mutation in one copy of a gene is sufficient to cause the disease. Example: Huntington's disease.

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What are recessive mutations?

Mutations in both copies of a gene are needed for the disease to manifest. Example: Cystic fibrosis.

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Explain gene-environment interactions.

The interaction between genetic predisposition and environmental factors that influence disease development. Example: A genetic predisposition to obesity can be triggered or exacerbated by a high-fat diet.

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What is the Human Genome Project (HGP)?

Completed in 2003, this project mapped the entire human genome, serving as a foundational reference for genomics research. It helped identify protein-coding genes and regulatory elements.

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What is the 1000 Genomes Project?

Aimed to catalogue human genetic variation across populations. It provided insights into SNPs and structural variants, improving our understanding of population genetics and disease susceptibility.

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What is ENCODE (Encyclopedia of DNA Elements)?

A project focused on understanding the functions of non-coding DNA and its role in gene regulation, leading to breakthroughs in epigenomics and transcriptional regulation.

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Study Notes

Human Genome Structure and Arrangement

  • The human genome is the complete set of DNA, directing human development
  • Organized into 23 chromosome pairs within the cell nucleus
    • 22 pairs are autosomes (non-sex chromosomes)
    • 1 pair are sex chromosomes (XX for females, XY for males)
  • Chromosomes are structured DNA molecules associated with histone proteins forming chromatin
  • Contains approximately 20,000-25,000 protein-coding genes (constituting 1-2% of the genome)
  • Genes are composed of exons (coding regions) and introns (non-coding regions)
  • Gene families exist, resulting from gene duplication during evolution

Non-Coding DNA

  • The majority (98-99%) of the genome is non-coding, previously termed "junk DNA"
  • Critical roles in regulation and cellular processes
    • Includes regulatory elements (promoters, enhancers, silencers, insulators)
    • Non-coding RNAs and transposons
    • Introns, despite not coding, are involved in alternative splicing, increasing protein diversity

Comparison with Other Species

  • Humans share roughly 98-99% of their DNA with chimpanzees
  • Differences in gene regulation and non-coding sequences lead to significant phenotypic differences

Genomic Variation

  • Mutations are small, permanent changes in DNA sequence, arising from errors during DNA replication or environmental factors
    • Point mutations (e.g., SNPs) are single nucleotide changes
    • Insertions/deletions (indels) are the addition or removal of nucleotides
  • Chromosomal mutations include duplications, inversions, translocations, or deletions
  • Polymorphisms (e.g., SNPs) are common genetic variations between individuals impacting genetic diversity, disease susceptibility, and traits.
  • Copy Number Variations (CNVs) are variations in the number of specific DNA segments, impacting disease susceptibility (e.g., cancer)
  • Epigenetic variations are reversible changes influencing gene expression without altering DNA sequence (e.g., DNA methylation, histone modifications)

Impact of Genetic Variation on Phenotype

  • Genetic variation is crucial for individual traits and diseases
  • Monogenic traits are controlled by a single gene; mutations lead to specific traits
  • Polygenic traits are influenced by multiple genes and environmental factors (e.g., height, intelligence)
  • Mutations can cause diseases (e.g., Huntington's disease; recessive mutations require mutations in both gene copies for manifestation; eg. Cystic fibrosis)
  • Gene-environment interactions influence disease susceptibility (e.g., genetic predisposition to obesity aggravated by high-fat diets)

Human Genome Projects

  • Human Genome Project (HGP) (completed in 2003) mapped the entire human genome, providing a reference sequence for research
  • 1000 Genomes Project aimed at cataloging human genetic variation across populations
  • ENCODE project studies the function of non-coding DNA
  • Personalized medicine leverages genomic data for tailored treatments
  • Gene editing technologies (e.g., CRISPR) offer potential treatments for genetic diseases

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