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Questions and Answers
What is the overall tendency of non-polar residues in protein structures?
What is the overall tendency of non-polar residues in protein structures?
Which characteristic distinguishes antiparallel beta-pleated sheets from hydrophobic interactions?
Which characteristic distinguishes antiparallel beta-pleated sheets from hydrophobic interactions?
What interactions are primarily involved in stabilizing protein structures through charged side chains?
What interactions are primarily involved in stabilizing protein structures through charged side chains?
Why is it rare for beta-pleated sheets to have fewer than five strands?
Why is it rare for beta-pleated sheets to have fewer than five strands?
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What role do hydrogen bonds play in the formation of protein structures?
What role do hydrogen bonds play in the formation of protein structures?
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Which of the following amino acids is considered essential for adults?
Which of the following amino acids is considered essential for adults?
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What is the significance of proline in protein structure?
What is the significance of proline in protein structure?
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Which of the following amino acids cannot be synthesized by the human body?
Which of the following amino acids cannot be synthesized by the human body?
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Arginine is classified as essential in which context?
Arginine is classified as essential in which context?
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Which amino acid has a non-chiral carbon atom?
Which amino acid has a non-chiral carbon atom?
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What phrase can help remember essential amino acids?
What phrase can help remember essential amino acids?
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Which amino acid is known as the 'conformational isomer' of leucine?
Which amino acid is known as the 'conformational isomer' of leucine?
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Which category do amino acids like glycine and alanine fall into?
Which category do amino acids like glycine and alanine fall into?
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What is the main function of the central vacuole in plant cells?
What is the main function of the central vacuole in plant cells?
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Which organelle is responsible for photosynthesis in plant cells?
Which organelle is responsible for photosynthesis in plant cells?
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What distinguishes the cell wall of plant cells from the cell walls of prokaryotic cells?
What distinguishes the cell wall of plant cells from the cell walls of prokaryotic cells?
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What is the function of lysosomes in animal cells?
What is the function of lysosomes in animal cells?
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Which part of the ribosome is involved in the assembly of proteins?
Which part of the ribosome is involved in the assembly of proteins?
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What is the primary function of the mitochondrion?
What is the primary function of the mitochondrion?
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What do plasmodesmata allow between neighboring plant cells?
What do plasmodesmata allow between neighboring plant cells?
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What role do peroxisomes play in a cell?
What role do peroxisomes play in a cell?
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What are the two types of endoplasmic reticulum and their main features?
What are the two types of endoplasmic reticulum and their main features?
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What is the role of the Golgi complex in the cell?
What is the role of the Golgi complex in the cell?
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Why is carbon described as the most important atom for biomolecules?
Why is carbon described as the most important atom for biomolecules?
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What type of motion is primarily associated with a flagellum?
What type of motion is primarily associated with a flagellum?
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What is the main structural difference between animal cells and plant cells?
What is the main structural difference between animal cells and plant cells?
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Which organelle is primarily involved in protein synthesis?
Which organelle is primarily involved in protein synthesis?
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What is the purpose of using the Henderson-Hasselbalch equation in preparing a buffer solution?
What is the purpose of using the Henderson-Hasselbalch equation in preparing a buffer solution?
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How would you calculate the total volume of buffer solution derived from the given concentrations?
How would you calculate the total volume of buffer solution derived from the given concentrations?
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What is the significance of pKa values in buffer preparation?
What is the significance of pKa values in buffer preparation?
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Which components are used to prepare a phosphate buffer solution with a pH of 6.5?
Which components are used to prepare a phosphate buffer solution with a pH of 6.5?
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When diluting a buffer solution to a specific final volume, which action should be performed first?
When diluting a buffer solution to a specific final volume, which action should be performed first?
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In preparing 2 L of a buffer, if 0.10 L of 1 M phosphate buffer is used, how much distilled water should be added?
In preparing 2 L of a buffer, if 0.10 L of 1 M phosphate buffer is used, how much distilled water should be added?
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Which of the following steps is essential after preparing the buffer solution?
Which of the following steps is essential after preparing the buffer solution?
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What is the first measurement step when preparing a buffer solution using NaCH3COO and CH3COOH?
What is the first measurement step when preparing a buffer solution using NaCH3COO and CH3COOH?
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What is the equilibrium constant expression for the dissociation of acetic acid?
What is the equilibrium constant expression for the dissociation of acetic acid?
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What is the pKa of acetic acid based on its theoretical value?
What is the pKa of acetic acid based on its theoretical value?
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If the pH of a solution is less than the pKa of acetic acid, which species predominates?
If the pH of a solution is less than the pKa of acetic acid, which species predominates?
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Which statement about buffers is true?
Which statement about buffers is true?
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At what pH does the predominant species of acetic acid become both the weak acid and the conjugate base?
At what pH does the predominant species of acetic acid become both the weak acid and the conjugate base?
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In a solution where pH is greater than the pKa of a weak acid, what occurs?
In a solution where pH is greater than the pKa of a weak acid, what occurs?
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What is the relationship between $K_w$, $[H_3O^+]$, and $[OH^-]$ at 25°C?
What is the relationship between $K_w$, $[H_3O^+]$, and $[OH^-]$ at 25°C?
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During a titration of a weak acid, what is indicated by the inflection point of the resulting titration curve?
During a titration of a weak acid, what is indicated by the inflection point of the resulting titration curve?
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What occurs at physiological pH (6.4-7.6) concerning weak acids?
What occurs at physiological pH (6.4-7.6) concerning weak acids?
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How can buffers be prepared?
How can buffers be prepared?
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What does the $pK_a$ value indicate for a weak acid?
What does the $pK_a$ value indicate for a weak acid?
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What is the value of water's ion product constant ($K_w$) at 25°C?
What is the value of water's ion product constant ($K_w$) at 25°C?
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If the pH of a solution is 4.50, which statement is true regarding acetic acid?
If the pH of a solution is 4.50, which statement is true regarding acetic acid?
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Study Notes
Buffer Solutions
- The Henderson-Hasselbalch equation relates the pH of a buffer solution to the ratio of conjugate base to weak acid:
[ \frac{[A^-]}{[HA]} = 10^{(pH - pK_a)} ] - For a buffer with acetic acid and sodium acetate, combine 2.65 g NaCH3COO and 0.73 mL CH3COOH in 500 mL of distilled water.
- Prepare a 2L 50 mM phosphate buffer at pH 6.5 using 60 mM NaH2PO4 and 75 mM Na2HPO4.
Cell Organelles: Animal and Plant Cells
- Lysosomes: Contain hydrolytic enzymes for intracellular digestion.
- Centrioles: Essential for spindle apparatus formation during cell division.
- Flagellum: Enables locomotion in certain cells.
- Central Vacuole (Plant Cells): Functions as a reservoir for nutrients, waste, and pigments; larger than vacuoles in animal cells.
- Cell Wall (Plant Cells): Composed of cellulose, providing rigidity unlike prokaryotic cell walls which are made of peptidoglycan.
- Chloroplasts (Plant Cells): Site of photosynthesis, containing chlorophyll for light harvesting.
Common Organelles in Animal and Plant Cells
- Nucleus: Contains genetic material and is the site for DNA and RNA synthesis.
- Ribosome: Site of protein synthesis, can be free in the cytoplasm or attached to the rough endoplasmic reticulum (Rough ER).
- Endoplasmic Reticulum: Network of membranes; Rough ER is involved with ribosomes, while Smooth ER synthesizes lipids.
- Golgi Complex: Sorts and transports molecules for cellular export.
- Peroxisomes: Contain oxidative enzymes for digestion, including hydrogen peroxide degradation.
- Mitochondrion: Powerhouse of the cell, involved in cellular respiration and has distinct membranes.
Biomolecules and Key Elements
- Carbon is essential in biomolecules due to its tetravalent nature, allowing it to form four bonds.
- Biologically Important Elements: Include C, H, N, O, P, and S, required in grams daily.
- Trace Elements: Required in milligrams or lesser amounts daily.
Weak Acids and pKa
- Acetic acid dissociation:
[ CH3COOH + H2O ⇌ CH3COO^- + H3O^+ ] - Equilibrium constant for acetic acid, ( K_a ):
( K_a = \frac{[CH3COO^-][H3O^+]}{[CH3COOH]} = 1.8 \times 10^{-5} ) - pKa = -log(K_a) = 4.74, with experimentally determined pKa varying slightly (4.76).
- pH comparisons indicate predominant species based on pH relative to pKa.
Amino Acids and Protein Structure
- Essential Amino Acids: Cannot be synthesized by the body; includes tryptophan, isoleucine, phenylalanine, and others.
- Non-essential Amino Acids: Can be synthesized by the body.
- Zwitterionic Form: Exists in physiological pH, facilitating interactions in proteins.
- Various interactions stabilize protein structures:
- Hydrophobic Interactions: Non-polar residues aggregate within the protein.
- Hydrogen Bonding: Occurs between side groups or peptide bonds.
- Electrostatic Interactions: Involve charged side chains (e.g., aspartate, glutamate).
Buffer Action
- Buffers resist pH changes upon small additions of acid or base, maintaining physiological conditions.
- Buffers can be composed of weak acid and its conjugate base or weak base and its conjugate acid.
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Description
Test your understanding of the Henderson-Hasselbalch equation. This quiz will challenge you to calculate the ratio of the conjugate base to a weak acid based on pH and pKa values. Prepare to apply your knowledge and work through examples for mastery.