Heme and Hemoglobin
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Questions and Answers

What is the primary role of the coordinated nitrogen atoms in the porphyrin ring system of heme?

  • Promoting the release of oxygen from Fe^2+.
  • Facilitating the conversion of Fe^2+ to Fe^3+.
  • Enhancing the binding of oxygen to Fe^3+.
  • Preventing the conversion of Fe^2+ to Fe^3+. (correct)

Iron in the Fe^3+ state can reversibly bind oxygen.

False (B)

What structural feature of heme-containing proteins prevents the irreversible oxidation of Fe^2+ to Fe^3+ by oxygen?

Sequestering of the heme deep within the protein structure.

In heme-containing proteins, one of the coordination bonds of iron is occupied by a side-chain nitrogen of a _______ residue.

<p>His</p> Signup and view all the answers

Match the following characteristics with either Fe^2+ or Fe^3+.

<p>Binds oxygen reversibly = Fe^2+ Does not bind oxygen = Fe^3+</p> Signup and view all the answers

Why is carbon monoxide (CO) toxic to aerobic organisms?

<p>It binds to heme iron with greater affinity than oxygen, excluding O<del>2</del>. (C)</p> Signup and view all the answers

What change causes the color difference between oxygen-depleted venous blood and oxygen-rich arterial blood when oxygen binds to heme iron?

<p>The electronic properties of heme iron change.</p> Signup and view all the answers

What type of organic ring structure is bound to an iron atom in heme?

<p>Protoporphyrin IX (C)</p> Signup and view all the answers

Which of the following statements accurately describes the T state of hemoglobin?

<p>His HC3 residues are involved in ion pairs. (A)</p> Signup and view all the answers

The transition from the T state to the R state in hemoglobin widens the pocket between subunits.

<p>False (B)</p> Signup and view all the answers

What term describes a protein in which the binding of a ligand to one site affects the binding properties of another site on the same protein?

<p>allosteric protein</p> Signup and view all the answers

In the R state of hemoglobin, the His HC3 residues rotate toward the ______ of the molecule.

<p>center</p> Signup and view all the answers

What structural change facilitates oxygen binding in myoglobin?

<p>Rotation of the side chain of the distal Histidine (His E7). (A)</p> Signup and view all the answers

Match the hemoglobin state with its oxygen affinity.

<p>T state = Low oxygen affinity R state = High oxygen affinity</p> Signup and view all the answers

Why is a transition from a low-affinity state (T state) to a high-affinity state (R state) necessary for hemoglobin function?

<p>To bind oxygen efficiently in the lungs and release it effectively in the tissues. (C)</p> Signup and view all the answers

Erythrocytes are fully functional cells capable of reproduction due to the presence of a nucleus and other organelles.

<p>False (B)</p> Signup and view all the answers

Which factor primarily induces conformational changes in allosteric proteins?

<p>Binding of modulators (C)</p> Signup and view all the answers

What is the approximate percentage of oxygen saturation in arterial blood as it leaves the lungs?

<p>96%</p> Signup and view all the answers

A single-subunit protein with one ligand-binding site can produce a sigmoid binding curve.

<p>False (B)</p> Signup and view all the answers

Normal human erythrocytes are shaped like __________ disks.

<p>biconcave</p> Signup and view all the answers

Match the following proteins with their primary function in oxygen transport or storage:

<p>Hemoglobin = Oxygen transport in blood Myoglobin = Oxygen storage in muscle tissue</p> Signup and view all the answers

Why is carbon monoxide (CO) binding to hemoglobin weaker than its binding to free heme?

<p>The distal histidine (His E7) sterically hinders the preferred perpendicular binding of CO. (D)</p> Signup and view all the answers

What volume of O2 gas is released by each 100 mL of blood passing through tissue?

<p>6.5 mL (C)</p> Signup and view all the answers

What precursor stem cells are erythrocytes formed from?

<p>Hemocytoblasts (A)</p> Signup and view all the answers

How does 2,3-bisphosphoglycerate (BPG) affect the affinity of hemoglobin for oxygen?

<p>BPG greatly reduces the affinity of hemoglobin for oxygen. (B)</p> Signup and view all the answers

The pKa of a certain residue in hemoglobin remains constant in both the R and T states.

<p>False (B)</p> Signup and view all the answers

What is the effect of increasing H+ concentration on oxygen release from hemoglobin?

<p>Increasing H+ concentration promotes the release of oxygen.</p> Signup and view all the answers

Carbon dioxide binds to the α-amino group at the amino-terminal end of each globin chain, forming ________.

<p>carbaminohemoglobin</p> Signup and view all the answers

Which of the following best describes the allosteric modulation by BPG on hemoglobin?

<p>Heterotropic inhibition (D)</p> Signup and view all the answers

BPG binds to hemoglobin at the same site as oxygen.

<p>False (B)</p> Signup and view all the answers

What role does BPG play in adapting to lower pO2 levels at high altitudes?

<p>BPG increases in concentration, promoting oxygen release to tissues.</p> Signup and view all the answers

At pH 7.6, which state is favored by hemoglobin?

<p>R state (B)</p> Signup and view all the answers

What is the primary function of class I MHC proteins?

<p>To bind and display peptides derived from intracellular protein degradation. (C)</p> Signup and view all the answers

All individuals have the same set of class I MHC protein variants.

<p>False (B)</p> Signup and view all the answers

Which cells of the immune system recognize the complexes of peptides and class I MHC proteins?

<p>T cells</p> Signup and view all the answers

The maturation of TC cells in the ______ includes a stringent selection process.

<p>thymus</p> Signup and view all the answers

Match the following descriptions to the correct MHC protein class:

<p>Class I MHC Protein = Displays peptides from intracellular proteins Class II MHC Protein = Regions of high variability near the amino-terminal ends of both alpha and beta chains.</p> Signup and view all the answers

What is the purpose of the stringent selection process in the thymus during TC cell maturation?

<p>To eliminate T<del>C</del> cells that might attack normal cells of the body. (C)</p> Signup and view all the answers

Which of the following is a characteristic of class I MHC proteins?

<p>The small chain is invariant while the large chain exhibits high variability. (D)</p> Signup and view all the answers

Class II MHC proteins present peptides derived exclusively from intracellular proteins.

<p>False (B)</p> Signup and view all the answers

What is the primary function of helper T cells (TH cells) within the immune system?

<p>To produce soluble signaling proteins called cytokines, including interleukins. (C)</p> Signup and view all the answers

The humoral immune system targets intracellular viruses and fungal infections within the body's cells.

<p>False (B)</p> Signup and view all the answers

What type of protein interaction is typically involved in protein-ligand binding, especially when a prosthetic group is not involved?

<p>Reversible binding</p> Signup and view all the answers

The immune response is facilitated by various types of __________ (white blood cells), which include macrophages and lymphocytes.

<p>leukocytes</p> Signup and view all the answers

Match the component of the immune system with its respective function.

<p>Humoral Immune System = Targets bacterial infections and extracellular viruses. Cellular Immune System = Destroys infected host cells. Helper T Cells = Produce cytokines to signal other immune cells. Macrophages = Patrol tissues and recognize molecules that signal infection.</p> Signup and view all the answers

Which of the following best describes how the immune system distinguishes between 'self' and 'nonself'?

<p>By recognizing and binding to specific chemical structures on pathogens and foreign molecules. (D)</p> Signup and view all the answers

How do most protein-ligand interactions achieve high specificity?

<p>Via a binding site that is a cleft lined with amino acid residues arranged to render the binding interaction highly specific. (A)</p> Signup and view all the answers

Humans are capable of producing fewer than 100 different antibodies with distinct binding specificities.

<p>False (B)</p> Signup and view all the answers

Flashcards

Porphyrin Ring

A flat ring system with an iron atom at its center, crucial for oxygen binding in proteins.

Iron Coordination Bonds

Iron's ability to form six bonds, four to nitrogen in the porphyrin ring, and two perpendicular to it.

Electron-Donating Nitrogen Atoms

Nitrogen atoms in the porphyrin ring that donate electrons, helping to keep iron in the Fe^2+ state.

Ferrous State (Fe^2+)

Iron's state (Fe^2+) that allows it to reversibly bind oxygen.

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Ferric State (Fe^3+)

Iron's state (Fe^3+) that cannot bind oxygen.

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Oxygen-Transporting Proteins

A protein containing heme, which transports oxygen in the blood.

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Heme Sequestration

When heme is deeply embedded within a protein structure, limiting access to iron's open coordination bonds and preventing oxidation.

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Histidine (His)

A residue that occupies one of the open coordination bonds of heme iron in proteins.

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Distal His Rotation

A nanosecond (10^-9 s) time scale event involving the rotation of the side chain of distal His (His^64).

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Erythrocytes

Red blood cells that transport almost all the oxygen carried by blood.

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Hemocytoblasts

Stem cells from which erythrocytes are formed.

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His E7 and CO Binding

The distal His (His E7) sterically hinders CO binding perpendicularly, weakening its binding to myoglobin.

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His E7 and O2 Binding

The distal His (His E7), facilitates the binding of O2.

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Erythrocyte Characteristics

Mature erythrocytes that have lost their intracellular organelles like the nucleus and mitochondria.

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Erythrocyte Function

Transports oxygen to tissues and carries hemoglobin.

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Myoglobin Function

An oxygen-storage protein that is relatively insensitive to small changes in the concentration of dissolved oxygen.

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His HC3

The carboxyl-terminal residue of the hemoglobin subunit.

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T State

A low-affinity state of hemoglobin for oxygen.

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R State

A high-affinity state of hemoglobin for oxygen.

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T to R Transition

Transition from T state to R state shifts subunit pairs, affecting ion pairs. His HC3 residues rotate toward the molecule's center in R state. Pocket between subunits narrows.

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Allosteric Protein

A protein where ligand binding at one site affects binding properties at another site.

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Modulators

Molecules that bind to allosteric proteins and induce conformational changes, interconverting more-active and less-active forms.

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Hemoglobin's Oxygen Binding

Hemoglobin undergoes a transition from a low-affinity (T) state to a high-affinity (R) state as more Oâ‚‚ molecules are bound exhibiting S-shaped binding.

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Changes in R state

The narrowing of the pocket between subunits and rotation of His HC3 residues toward the molecule's center which are no longer in ion pairs.

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pKa in Hemoglobin's R State

In the R state, the pKa falls to its normal value of 6.0 because the ion pair cannot form.

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2,3-Bisphosphoglycerate (BPG)

An example of heterotropic allosteric modulation in hemoglobin.

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Carbaminohemoglobin Formation

CO2 binds as a carbamate group to the α-amino group at the amino-terminal end of each globin chain.

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BPG's Effect on Hemoglobin Affinity

BPG is present in high concentrations in erythrocytes and reduces hemoglobin's affinity for oxygen.

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BPG Binding Location

BPG binds at a site distant from the oxygen-binding site.

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BPG's Regulatory Role

BPG regulates hemoglobin's O2-binding affinity in relation to the pO2 in the lungs.

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BPG's Role at High Altitudes

BPG plays an important role in physiological adaptation to lower pO2 at high altitudes.

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Effect of H+ Concentration on O2 Binding

As the concentration of H+ rises, protonation of His HC3 promotes release of oxygen by favoring a transition to the T state.

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Protein-Ligand Binding Site

Binding sites are clefts in proteins lined with amino acid residues, arranged for specific ligand interaction.

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Self vs. Nonself Recognition

The ability of the immune system to distinguish between the body's own molecules and foreign ones.

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Leukocytes

White blood cells that play a role in the immune response.

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Macrophages

Immune cells that engulf and digest pathogens and cellular debris.

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Lymphocytes

A type of white blood cell responsible for adaptive immunity.

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Humoral Immune System

The part of the immune system that deals with extracellular pathogens and individual proteins using antibodies.

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Helper T Cells (TH cells)

A type of T cell that releases cytokines to signal and coordinate the immune response.

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Cytokines (including Interleukins)

Signaling proteins released by helper T cells to coordinate immune responses.

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Class I MHC Proteins

Proteins that bind and display peptides from degraded proteins within a cell.

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Peptide-MHC Complex

The recognition targets of T-cell receptors on TC cells, consisting of peptides and class I MHC proteins.

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T-cell receptor specificity

Each TC cell has many copies of only one T-cell receptor that is specific for a particular class I MHC protein--peptide complex.

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T Cell Selection

The elimination of TC cells in the thymus that might attack normal cells.

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β2-microglobulin

The smaller, invariant chain associated with Class I MHC proteins.

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Class I MHC α chain

The larger chain of Class I MHC proteins, exhibiting high variability.

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Peptide-binding site

The location on MHC molecules where peptides are bound and presented.

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T-cell receptor (TCR)

The protein that interacts with the peptide-MHC I complex.

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