Genomics: Decoding the Complete Genetic Code

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Questions and Answers

How do histones facilitate DNA packaging in eukaryotes?

  • By enzymatically cleaving DNA into smaller fragments.
  • By neutralizing the negative charge of DNA, allowing tighter packing. (correct)
  • By actively unwinding the DNA double helix to reduce its length.
  • By providing a negatively charged scaffold for DNA to wrap around.

What is the primary difference between euchromatin and heterochromatin?

  • Heterochromatin is found only in prokaryotes, while euchromatin is exclusive to eukaryotes.
  • Heterochromatin consists of DNA, while euchromatin consists of RNA.
  • Euchromatin is loosely packed and transcriptionally active, while heterochromatin is tightly packed and generally inactive. (correct)
  • Euchromatin contains more genes than heterochromatin.

What is the role of non-histone proteins in metaphase chromosomes?

  • To initiate the process of chromosome condensation.
  • To provide the primary structural support after histones are removed. (correct)
  • To facilitate DNA replication during cell division.
  • To protect the telomeres from degradation.

How do the number of genes and biological complexity correlate in organisms?

<p>There is no direct correlation between the number of genes and biological complexity. (B)</p> Signup and view all the answers

What is the significance of alternative splicing in the context of the human genome?

<p>It allows a single gene to encode multiple different proteins, increasing the proteome's diversity. (C)</p> Signup and view all the answers

What is the key characteristic of the bacterial genome that distinguishes it from the eukaryotic genome?

<p>Bacterial genomes are typically a single, circular DNA molecule without histones, whereas eukaryotic genomes consist of multiple linear chromosomes with histones. (D)</p> Signup and view all the answers

What is the primary function of plasmids in bacteria, and how are they useful in biotechnology?

<p>Plasmids carry genes for antibiotic resistance and are used as vectors for recombinant DNA technology. (C)</p> Signup and view all the answers

What is the significance of the 'three-person baby' technique regarding mitochondrial DNA?

<p>It aims to prevent the transmission of mitochondrial diseases by replacing the mother's affected mitochondria with healthy donor mitochondria. (B)</p> Signup and view all the answers

How do retroviruses replicate their genomes, and what enzyme is critical to this process?

<p>Retroviruses use reverse transcriptase to create a DNA copy of their RNA genome, which is then integrated into the host cell's DNA. (C)</p> Signup and view all the answers

Considering the composition of the human genome, what proportion is made up of transposable elements?

<p>Approximately 45% (B)</p> Signup and view all the answers

Flashcards

Genome

The complete set of DNA within a single cell of an organism.

Genomics

The branch of molecular biology concerned with the structure, function, evolution, and mapping of genomes.

Coding Regions

Regions of a genome that code for proteins or RNA.

Noncoding DNA

Regions of a genome that do not code for proteins or RNA.

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Reference Sequence

The 'wild type' sequence; the major allele present in the human population.

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Nucleosome

The basic structural unit of DNA packaging in eukaryotes, consisting of DNA coiled around histone proteins.

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Chromatin

A complex of DNA and proteins that forms chromosomes within the nucleus of eukaryotic cells.

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Histones

Small, positively charged proteins around which DNA is wrapped.

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Heterochromatin

Regions of DNA that are tightly packed and genetically inactive.

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Euchromatin

Regions of DNA that are loosely packed and genetically active.

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Study Notes

  • The genome represents the complete genetic material within an organism's cell
  • It includes DNA (or RNA in RNA viruses), coding regions (genes), noncoding DNA, and the genomes of mitochondria and chloroplasts
  • Genomics is the study of the structure, function, evolution, and mapping of genomes
  • The human nuclear genome contains approximately 30,000 genes, but less than 2% of the nuclear genome is made up of said genes
  • A large portion of the human nuclear genome consists of 27,000 protein-coding genes and roughly 3,000 RNA-coding genes
  • Coding DNA makes up 2% of the genome and the remaining 98% is non-coding DNA
  • The roundworm C. elegans genome has approximately 19,100 protein-coding genes
  • There is no direct correlation between biological complexity and the number of genes an organism possesses
  • Ref seq is considered the "wild type" sequence and is the major allele present in the human population
  • The organization of the human genome varies by chromosome
  • The genome averages approximately 6.7 genes per megabase (Mb).

Amplification of Information Content

  • Many genes are capable of being generating creating multiple products due to alternative splicing
  • Subsequent biochemical modification of encoded proteins also impacts the end product
  • 30,000 human genes encode many hundreds of thousands of different proteins, which are collectively referred to as the proteome
  • Proteins operate in networks and respond in a coordinated way to various signals like genetic/developmental/environmental cues

Genes Organization

  • Gene families share closely related DNA sequences, encoding polypeptides with closely related amino acid sequences
  • Genes arise by duplication of a primitive precursor gene
  • Genes may be organized in the following ways:
    • Single cluster, all on single chromosomes
    • Dispersed, at different chromosome locations
    • Multiple cluster, gene clustered on different chromosome

Gene Structure

  • Exons are expression sequences
  • Introns are intervening sequences

Pseudogenes

  • Pseudogenes are sequences with similarities to functional globin and OR genes
  • They are non-coding and do not produce functional RNA or protein products

Non-Coding DNA contains:

- Satellite DNA: Large blocks (100 kb to several Mb) of tandemly repeated sequences
- Minisatellite DNA: Moderately-sized blocks (0.1 kb to 20 kb) of tandemly repeated sequences, found in telomere regions (TTAGGG)
- Microsatellite DNA: Small blocks (<100 bp) of tandemly repeated sequences

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