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Questions and Answers
What is the primary mechanism required for homologous recombination?
What is the primary mechanism required for homologous recombination?
- Identical DNA fragments
- Extensive sequence similarity (correct)
- Unique DNA recognition sequences
- Random DNA segments
Site-specific recombination requires extensive homology between DNA segments.
Site-specific recombination requires extensive homology between DNA segments.
False (B)
Name a reconbinase enzyme involved in site-specific recombination.
Name a reconbinase enzyme involved in site-specific recombination.
Cre
The process that ensures genetic diversity during meiosis is called ______.
The process that ensures genetic diversity during meiosis is called ______.
Match the type of recombination with its characteristic:
Match the type of recombination with its characteristic:
Which of the following best describes the biological function of homologous recombination?
Which of the following best describes the biological function of homologous recombination?
RecA is a protein used in mechanism of homologous recombination in bacteria.
RecA is a protein used in mechanism of homologous recombination in bacteria.
What biological function is associated with site-specific recombination?
What biological function is associated with site-specific recombination?
What is the purpose of RecBCD in the repair process?
What is the purpose of RecBCD in the repair process?
Holliday junctions can only produce crossover products.
Holliday junctions can only produce crossover products.
What does RecA bind to in the process of homologous recombination?
What does RecA bind to in the process of homologous recombination?
The Chi sequence is recognized by RecC and alters the behavior of the RecBCD complex, reducing degradation of the ______ strand.
The Chi sequence is recognized by RecC and alters the behavior of the RecBCD complex, reducing degradation of the ______ strand.
Match the following components with their functions in homologous recombination:
Match the following components with their functions in homologous recombination:
Which statement is true regarding the resolution of Holliday junctions?
Which statement is true regarding the resolution of Holliday junctions?
What is a key feature of the RecBCD complex in the context of homologous recombination?
What is a key feature of the RecBCD complex in the context of homologous recombination?
What is the primary outcome of the Cre-Lox system?
What is the primary outcome of the Cre-Lox system?
Sister chromatid exchange (SCE) leads to genetic diversity.
Sister chromatid exchange (SCE) leads to genetic diversity.
What type of DNA structure forms during the process of recombination known as the Holliday Junction?
What type of DNA structure forms during the process of recombination known as the Holliday Junction?
Sister chromatid exchange mainly occurs during ________ as a repair mechanism.
Sister chromatid exchange mainly occurs during ________ as a repair mechanism.
Match the processes to their descriptions:
Match the processes to their descriptions:
What is a key difference between recombination in meiosis and mitosis?
What is a key difference between recombination in meiosis and mitosis?
BrdU can be used to visualize sister chromatid exchanges in cells.
BrdU can be used to visualize sister chromatid exchanges in cells.
What is the role of recombination in meiosis?
What is the role of recombination in meiosis?
The genetic recombination process is the breaking and ________ of DNA.
The genetic recombination process is the breaking and ________ of DNA.
What is the primary function of sister chromatid exchange?
What is the primary function of sister chromatid exchange?
What is the primary outcome of homology-directed repair in the context of DNA?
What is the primary outcome of homology-directed repair in the context of DNA?
Spontaneous branch migration occurs rapidly and effectively without any external assistance.
Spontaneous branch migration occurs rapidly and effectively without any external assistance.
What role does RuvB play in bacterial branch migration?
What role does RuvB play in bacterial branch migration?
The process by which one strand of DNA invades a homologous DNA molecule is called __________.
The process by which one strand of DNA invades a homologous DNA molecule is called __________.
Match the proteins involved in branch migration with their respective organisms:
Match the proteins involved in branch migration with their respective organisms:
What is a primary function of meiotic recombination?
What is a primary function of meiotic recombination?
The D-loop is formed during strand invasion when a 5' overhang pairs with the complementary strand of DNA.
The D-loop is formed during strand invasion when a 5' overhang pairs with the complementary strand of DNA.
What happens to the DNA at the double-strand break during the processing phase?
What happens to the DNA at the double-strand break during the processing phase?
Efficient branch migration is essential for maintaining __________ stability.
Efficient branch migration is essential for maintaining __________ stability.
In what context might a double-strand break (DSB) occur?
In what context might a double-strand break (DSB) occur?
What is formed when two single DNA strands exchange partners during crossing over?
What is formed when two single DNA strands exchange partners during crossing over?
Branch migration is a static process that does not change the length of the heteroduplex region.
Branch migration is a static process that does not change the length of the heteroduplex region.
What enzyme resolves the Holliday junction in eukaryotes?
What enzyme resolves the Holliday junction in eukaryotes?
The process of _____ occurs when single-strand breaks in homologous DNA molecules lead to strand invasion.
The process of _____ occurs when single-strand breaks in homologous DNA molecules lead to strand invasion.
Match the following stages of Holliday junction formation to their descriptions:
Match the following stages of Holliday junction formation to their descriptions:
What structure do the DNA arms of the Holliday junction form when viewed from the side?
What structure do the DNA arms of the Holliday junction form when viewed from the side?
Holliday junctions are initially four-fold symmetrical and can also adopt a stacked-X conformation.
Holliday junctions are initially four-fold symmetrical and can also adopt a stacked-X conformation.
What is the role of divalent cations like magnesium (Mg^2+) in relation to Holliday junctions?
What is the role of divalent cations like magnesium (Mg^2+) in relation to Holliday junctions?
In the resolution process, the Holliday junction can result in _____ products where chromosomes exchange large DNA segments.
In the resolution process, the Holliday junction can result in _____ products where chromosomes exchange large DNA segments.
Which of the following correctly describes single-strand breaks in the context of DNA recombination?
Which of the following correctly describes single-strand breaks in the context of DNA recombination?
Flashcards
Homologous Recombination
Homologous Recombination
Exchange of DNA segments between similar DNA molecules, crucial for DNA repair and genetic diversity.
Homologous sequences
Homologous sequences
DNA segments with high similarity or identity, needed for homologous recombination.
RecA protein
RecA protein
Bacterial protein essential for homologous recombination.
Site-Specific Recombination
Site-Specific Recombination
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Recombinases
Recombinases
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Cre-Lox system
Cre-Lox system
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Double-stranded DNA breaks
Double-stranded DNA breaks
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Crossing Over
Crossing Over
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Cre-Lox
Cre-Lox
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Sister Chromatid Exchange (SCE)
Sister Chromatid Exchange (SCE)
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Recombination in Meiosis I
Recombination in Meiosis I
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Genetic Recombination
Genetic Recombination
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Holliday Junction
Holliday Junction
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Meiosis recombination
Meiosis recombination
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Mitosis recombination
Mitosis recombination
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Sister Chromatids
Sister Chromatids
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Harlequin Chromosomes
Harlequin Chromosomes
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DNA Replication
DNA Replication
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Holliday Junction Formation
Holliday Junction Formation
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Strand invasion
Strand invasion
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Branch Migration
Branch Migration
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Resolution (Holliday Junction)
Resolution (Holliday Junction)
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Crossover Products
Crossover Products
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Non-crossover products
Non-crossover products
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Heteroduplex region
Heteroduplex region
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Single-strand breaks
Single-strand breaks
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Holliday Junction symmetry
Holliday Junction symmetry
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Stacked-X conformation
Stacked-X conformation
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Heteroduplex DNA
Heteroduplex DNA
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Spontaneous Branch Migration
Spontaneous Branch Migration
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Protein-Assisted Branch Migration
Protein-Assisted Branch Migration
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RuvA and RuvB
RuvA and RuvB
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RAD51
RAD51
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DSB (Double-strand Break)
DSB (Double-strand Break)
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Exonuclease Activity
Exonuclease Activity
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RecBCD complex
RecBCD complex
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Chi sequence
Chi sequence
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D-loop structure
D-loop structure
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Resolution
Resolution
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Study Notes
Genetic Recombination
- Genetic recombination is the process of breaking and rejoining DNA segments.
- It enables new combinations of genetic material.
Two Types of Recombination
-
Homologous Recombination
- Involves exchanging DNA segments between similar or identical DNA molecules.
- Requires significant sequence similarity (homology) between the segments.
- Uses general recombination proteins like RecA (bacteria) and RecBCD (bacteria, eukaryotes) to process DNA.
- Repair double-stranded DNA breaks and maintain genome integrity.
- Essential for genetic diversity during meiosis and crossover events.
- Results in an exchange between homologous regions, often producing crossover products.
-
Site-specific Recombination
- Involves exchanging DNA at specific recognition sequences.
- Uses short, unique sequences.
- Relies on specific recombinase enzymes (e.g., Cre in the Cre-Lox system, or integrases).
- Does not rely on extensive homology.
- Important in biological functions such as viral genome integration.
Recombination in Meiosis I
- Sister Chromatid Exchange (SCE)
- Involves the exchange of genetic material between identical sister chromatids during mitosis, used for DNA repair.
- Does not contribute to genetic diversity.
Holliday Junctions
- A four-stranded DNA structure formed when homologous or nearly identical DNA molecules align.
- This structure is important for various genomic processes.
Formation Process (Holliday Junction)
- Involves strand invasion and branch migration.
- Involves specific enzymes to resolve the junctions (e.g., RuvC in bacteria).
- Results in non-crossover or crossover products depending on cleavage of the junction.
- Non-crossover products—no substantial exchange of genetic material.
Branch Migration
- A process where the Holliday junction moves along the DNA.
- Driven by enzymes like RuvAB in bacteria.
- Important in DNA repair and recombination.
Stacked-X Conformation
- This is a key structural feature of Holliday junctions that is adopted under various conditions within a cell.
- This conformation involves stacking base pairs and folded arms.
- There are two types of strands in this conformation
- Continuous
- Exchanging
Double-strand Break Repair (DSBR) Model
- A model describing how double-strand breaks in DNA are repaired.
- Involves strand invasion and repair synthesis.
Homologous Recombination in E. Coli
- The steps in homologous recombination in E.coli are described.
- Pre-junction formation
- Post-junction formation
- This is a key mechanism for ensuring robust DNA repair in E. coli.
RecBCD
- A complex composed of several components with key functions relevant to DNA metabolism
RecA
- A key protein that is involved in many steps of homologous recombination.
RuvA and RuvB
- Proteins that are important in the branch migration part of the process of homologous recombination in bacteria.
RuvC
- A specific enzyme that is involved in the resolution of Holliday junctions.
- Targeted to DNA junctions.
Homologous Recombination in Yeast
- Five key steps in homologous recombination in yeast are detailed.
- Double-strand break formation
- Overhang formation
- Filament formation
- Holliday junction formation
- Resolution of Holliday junctions.
Filament Creation
- A single-stranded DNA overhang formed at the broken site.
- Key proteins such as RAD51 play important roles.
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