Genetic Mapping: Linkage Analysis
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Questions and Answers

What is the phenomenon where the phenotypic effects of some mammalian genes depend on their parent of origin?

  • Genomic imprinting (correct)
  • Genomic silencing
  • Genetic expression
  • Genetic mutation
  • What is the assumption for most genes regarding their phenotypic effects?

  • They have different effects depending on the parent of origin
  • They are only inherited from the mother
  • They have the same effect regardless of the parent of origin (correct)
  • They are sex-linked
  • Which chromosome is associated with Prader-Willi syndrome and Angelman syndrome?

  • Chromosome 20
  • Y chromosome
  • Chromosome 15 (correct)
  • X chromosome
  • What is the characteristic of individuals with Prader-Willi syndrome?

    <p>Mental retardation, obesity, and short stature</p> Signup and view all the answers

    What is the main difference between Prader-Willi syndrome and Angelman syndrome?

    <p>The parent of origin</p> Signup and view all the answers

    What happens to the imprinting status of a gene in gamete-producing cells?

    <p>It is temporarily erased</p> Signup and view all the answers

    What determines the imprinting status of a gene?

    <p>The sex of the parent</p> Signup and view all the answers

    What is the result of genomic imprinting on the same allele?

    <p>It has different effects depending on the parent of origin</p> Signup and view all the answers

    What is the process where one allele is silenced and the other allele is expressed?

    <p>Genomic imprinting</p> Signup and view all the answers

    What happens to genes when methyl groups are added to cytosine nucleotides on one of the alleles?

    <p>They are silenced</p> Signup and view all the answers

    What is the result of genomic imprinting?

    <p>One allele is silenced and the other is expressed</p> Signup and view all the answers

    How many mammalian genes are subject to imprinting?

    <p>Hundreds</p> Signup and view all the answers

    What is the disorder associated with genomic imprinting that leads to mental retardation?

    <p>Fragile X syndrome</p> Signup and view all the answers

    What is the characteristic of the abnormal X chromosome in Fragile X syndrome?

    <p>Tip hangs on by a thin thread of DNA</p> Signup and view all the answers

    Who first observed cytoplasmic genes in plants?

    <p>Karl Correns</p> Signup and view all the answers

    Where are extranuclear genes located?

    <p>Mitochondria and chloroplasts</p> Signup and view all the answers

    What is the inheritance pattern of extranuclear genes?

    <p>Non-Mendelian</p> Signup and view all the answers

    What determines the coloration of offspring in cytoplasmic genes?

    <p>Maternal parent</p> Signup and view all the answers

    What is the frequency of Fragile X syndrome in males?

    <p>1 in 1,500</p> Signup and view all the answers

    Study Notes

    Genetic Mapping

    • Geneticists use recombination data to map a chromosome's genetic loci, creating an ordered list of genes along a particular chromosome.
    • Alfred Sturtevant developed a method for constructing a genetic map by using crossing over of linked genes.
    • The frequency of recombinant offspring reflects the distances between genes on a chromosome.
    • The greater the distance between two genes, the higher the probability of a crossover and therefore a higher recombination frequency.

    Sturtevant's Mapping Method

    • Sturtevant used the testcross design to map the relative position of three fruit fly genes: body color (b), wing size (vg), and eye color (cn).
    • The recombination frequencies between cn and b, cn and vg, and b and vg were used to determine the order of the genes.
    • The arrangement of the genes places the eye color gene between the other two.

    Recombination Frequency

    • One map unit (or centimorgan) is equivalent to a 1% recombination frequency.
    • The recombination frequency is not always additive due to multiple crossing over events.

    Linked Genes

    • Linked genes tend to be inherited together because they are located on the same chromosome.
    • Each chromosome has hundreds or thousands of genes.
    • Genes located on the same chromosome are passed along as a unit, resulting in deviations from independent assortment.

    Morgan's Observations

    • Morgan observed the inheritance of body color and wing size in fruit flies.
    • He crossed F1 heterozygous females with homozygous recessive males.
    • The results showed a large number of wild-type and double-mutant flies, indicating that the genes are linked.

    Chromosome Mapping

    • Genes located far apart on a chromosome are mapped by adding the recombination frequencies between the distant genes and intervening genes.
    • Sturtevant and his colleagues were able to map the linear positions of genes in Drosophila into four groups, one for each chromosome.

    Limitations of Linkage Maps

    • A linkage map provides an imperfect picture of a chromosome.
    • Map units indicate relative distance and order, not precise locations of genes.
    • The frequency of crossing over is not uniform over the length of a chromosome.

    Chromosomal Alterations

    • Several serious human disorders are due to alterations of chromosome number and structure.
    • Aneuploid zygotes may have an imbalance of gene products, leading to developmental problems.
    • Certain aneuploid conditions, such as Down syndrome, can lead to survival to birth and beyond.

    Down Syndrome

    • Down syndrome is caused by three copies of chromosome 21.
    • It affects one in 700 children born in the United States.
    • The condition severely alters an individual's phenotype in specific ways.

    Nondisjunction

    • Most cases of Down syndrome result from nondisjunction during gamete production in one parent.
    • The frequency of Down syndrome correlates with the age of the mother.

    Genomic Imprinting

    • Genomic imprinting is a process where a gene on one homologous chromosome is silenced, while its allele on the homologous chromosome is expressed.
    • The imprinting status of a gene depends on whether it resides in a female or a male.
    • The same alleles may have different effects on offspring, depending on whether they arrive in the zygote via the ovum or via the sperm.

    Imprinting Disorders

    • Prader-Willi syndrome and Angelman syndrome are due to the same cause, a deletion of a specific segment of chromosome 15.
    • The difference between the disorders is due to genomic imprinting.
    • Prader-Willi syndrome is inherited from the father, while Angelman syndrome is inherited from the mother.

    Linked Genes

    • Linked genes tend to be inherited together because they are located on the same chromosome.
    • Each chromosome has hundreds or thousands of genes.
    • Genes located on the same chromosome, linked genes, tend to be inherited together because the chromosome is passed along as a unit.

    Morgan's Observation

    • Morgan observed linkage and its deviations when he followed the inheritance of characters for body color and wing size.
    • The wild-type body color is gray (b+) and the mutant black (b).
    • The wild-type wing size is normal (vg+) and the mutant has vestigial wings (vg).

    Deviation from Independent Assortment

    • According to independent assortment, this should produce 4 phenotypes in a 1:1:1:1 ratio.
    • Morgan observed a large number of wild-type (gray-normal) and double-mutant (black-vestigial) flies among the offspring.
    • These phenotypes correspond to those of the parents.

    Linkage and Crossing Over

    • Morgan reasoned that body color and wing shape are usually inherited together because their genes are on the same chromosome.
    • The other two phenotypes (gray-vestigial and black-normal) were fewer than expected from independent assortment.
    • A second crossing over “cancels out” the first and reduces the observed number of recombinant offspring.
    • Genes far apart (for example, b-vg) are more likely to experience multiple crossing over events.

    Genes on the Same Chromosome

    • Some genes on a chromosome are so far apart that a crossover between them is virtually certain.
    • In this case, the frequency of recombination reaches its maximum value of 50% and the genes act as if found on separate chromosomes and are inherited independently.

    Mapping Genes

    • Genes located far apart on a chromosome are mapped by adding the recombination frequencies between the distant genes and intervening genes.
    • Sturtevant and his colleagues were able to map the linear positions of genes in Drosophila into four groups, one for each chromosome.

    Linkage Maps

    • A linkage map provides an imperfect picture of a chromosome.
    • Map units indicate relative distance and order, not precise locations of genes.
    • The frequency of crossing over is not actually uniform over the length of a chromosome.

    Sex-Linked Genes

    • Sex-linked genes have unique patterns of inheritance.
    • In addition to their role in determining sex, the sex chromosomes, especially the X chromosome, have genes for many characters unrelated to sex.
    • Sex-linked genes follow the same pattern of inheritance as the white-eye locus in Drosophila.

    Sex-Linked Recessive Disorders

    • If a sex-linked trait is due to a recessive allele, a female will have this phenotype only if homozygous.
    • Heterozygous females will be carriers.
    • Because males have only one X chromosome (hemizygous), any male receiving the recessive allele from his mother will express the trait.
    • The chance of a female inheriting a double dose of the mutant allele is much less than the chance of a male inheriting a single dose.

    Human Sex-Linked Disorders

    • Duchenne muscular dystrophy affects one in 3,500 males born in the United States.
    • Affected individuals rarely live past their early 20s.
    • This disorder is due to the absence of an X-linked gene for a key muscle protein, called dystrophin.

    Alterations of Chromosome Number or Structure

    • Nondisjunction occurs when problems with the meiotic spindle cause errors in daughter cells.
    • This may occur if tetrad chromosomes do not separate properly during meiosis I.
    • Alternatively, sister chromatids may fail to separate during meiosis II.

    Aneuploidy

    • As a consequence of nondisjunction, some gametes receive two of the same type of chromosome and another gamete receives no copy.
    • Offspring resulting from fertilization of a normal gamete with one after nondisjunction will have an abnormal chromosome number or aneuploidy.
    • Trisomic cells have three copies of a particular chromosome type and have 2n + 1 total chromosomes.
    • Monosomic cells have only one copy of a particular chromosome type and have 2n - 1 chromosomes.

    Polyploidy

    • Organisms with more than two complete sets of chromosomes have undergone polyploidy.
    • This may occur when a normal gamete fertilizes another gamete in which there has been nondisjunction of all its chromosomes.
    • The resulting zygote would be triploid (3n).
    • Alternatively, if a 2n zygote failed to divide after replicating its chromosomes, a tetraploid (4n) embryo would result from subsequent successful cycles of mitosis.

    Genomic Imprinting

    • In many cases, genomic imprinting occurs when methyl groups are added to cytosine nucleotides on one of the alleles.
    • Heavily methylated genes are usually inactive.
    • The animal uses the allele that is not imprinted.
    • In other cases, the absence of methylation in the vicinity of a gene plays a role in silencing it.

    Fragile X Syndrome

    • Fragile X syndrome, which leads to various degrees of mental retardation, also appears to be subject to genomic imprinting.
    • This disorder is named for an abnormal X chromosome in which the tip hangs on by a thin thread of DNA.
    • Inheritance of fragile X is complex, but the syndrome is more common when the abnormal chromosome is inherited from the mother.

    Extranuclear Genes

    • Not all of a eukaryote cell's genes are located in the nucleus.
    • Extranuclear genes are found on small circles of DNA in mitochondria and chloroplasts.
    • These organelles reproduce themselves.
    • Their cytoplasmic genes do not display Mendelian inheritance.
    • They are not distributed to offspring during meiosis.

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    Description

    Learn how geneticists use recombination data to map genetic loci on a chromosome and how Alfred Sturtevant developed a method for constructing a genetic map. Understand the concept of linkage analysis and its applications.

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