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Questions and Answers
What is the primary function of aminoacyl-tRNA synthase?
What is the primary function of aminoacyl-tRNA synthase?
How many different aminoacyl-tRNA synthases are responsible for charging tRNAs?
How many different aminoacyl-tRNA synthases are responsible for charging tRNAs?
What energy source is required for the charging of tRNA?
What energy source is required for the charging of tRNA?
What does the specific recognition site of a tRNA provide?
What does the specific recognition site of a tRNA provide?
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What is produced as a result of the charging reaction of tRNA?
What is produced as a result of the charging reaction of tRNA?
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What molecule is released when an amino acid is attached to tRNA?
What molecule is released when an amino acid is attached to tRNA?
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What is the role of aminoacyl-tRNA synthetase in the process described?
What is the role of aminoacyl-tRNA synthetase in the process described?
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What happens to the tRNA after the amino acid is activated?
What happens to the tRNA after the amino acid is activated?
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Which of the following correctly describes the initial binding process for tRNA?
Which of the following correctly describes the initial binding process for tRNA?
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Which component is necessary for the covalent binding of an amino acid to tRNA?
Which component is necessary for the covalent binding of an amino acid to tRNA?
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What does pyrophosphate consist of in this biochemical context?
What does pyrophosphate consist of in this biochemical context?
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In what circumstance is AMP released during the charging of tRNA?
In what circumstance is AMP released during the charging of tRNA?
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What is the state of the tRNA after being charged with an amino acid?
What is the state of the tRNA after being charged with an amino acid?
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What catalyzes the binding of the 50S rRNA subunit during initiation in prokaryotes?
What catalyzes the binding of the 50S rRNA subunit during initiation in prokaryotes?
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Which part of the mRNA is complementary to the Shine-Dalgarno sequence?
Which part of the mRNA is complementary to the Shine-Dalgarno sequence?
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What is the role of initiator tRNA during the initiation step in prokaryotic translation?
What is the role of initiator tRNA during the initiation step in prokaryotic translation?
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What occurs at the 3' end of a codon?
What occurs at the 3' end of a codon?
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Which elongation factor is responsible for recognizing and transporting aminoacyl-tRNAs to the A site?
Which elongation factor is responsible for recognizing and transporting aminoacyl-tRNAs to the A site?
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What is the result of the arrangement of hydrogen bonds at the third position of the codon-anticodon pair?
What is the result of the arrangement of hydrogen bonds at the third position of the codon-anticodon pair?
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During elongation, what is found in the P site of the ribosome?
During elongation, what is found in the P site of the ribosome?
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What structural feature aids in amino acid binding in tRNA?
What structural feature aids in amino acid binding in tRNA?
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What happens to EF-Tu after it delivers the aminoacyl-tRNA to the ribosome?
What happens to EF-Tu after it delivers the aminoacyl-tRNA to the ribosome?
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Which sites are found in the structure of a ribosome during protein synthesis?
Which sites are found in the structure of a ribosome during protein synthesis?
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What is the result of IF3 being removed during the initiation phase?
What is the result of IF3 being removed during the initiation phase?
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What does the term 'degeneracy of the code' refer to?
What does the term 'degeneracy of the code' refer to?
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Which of the following correctly describes the state of the ribosome during the initiation phase?
Which of the following correctly describes the state of the ribosome during the initiation phase?
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Which characteristic is NOT a feature of tRNA?
Which characteristic is NOT a feature of tRNA?
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Which type of bond is crucial for stabilizing the structure of tRNA?
Which type of bond is crucial for stabilizing the structure of tRNA?
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How many tRNAs are needed to read the complete set of codons?
How many tRNAs are needed to read the complete set of codons?
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Which direction does the amino acid attachment site of tRNA point?
Which direction does the amino acid attachment site of tRNA point?
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Which mechanism allows tRNA to correspond to different amino acids?
Which mechanism allows tRNA to correspond to different amino acids?
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What occurs during the initiation phase of translation?
What occurs during the initiation phase of translation?
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What role does tRNA play during the elongation phase?
What role does tRNA play during the elongation phase?
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What distinguishes prokaryotic translation from eukaryotic translation?
What distinguishes prokaryotic translation from eukaryotic translation?
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In eukaryotic translation, what is the Kozak sequence associated with?
In eukaryotic translation, what is the Kozak sequence associated with?
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What happens when a stop codon is reached during translation?
What happens when a stop codon is reached during translation?
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Which molecule is bound by IF2 during the process of translation initiation?
Which molecule is bound by IF2 during the process of translation initiation?
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What is the primary function of initiation factors in prokaryotic translation?
What is the primary function of initiation factors in prokaryotic translation?
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What is the role of formyl-methionine in prokaryotic translation initiation?
What is the role of formyl-methionine in prokaryotic translation initiation?
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Study Notes
The Wobble
- The wobble occurs at the 3’ end of the codon and 5’ end of the anti-codon.
- The wobble is a result of the arrangement of hydrogen bonds of base pairs at the third position of the codon.
- The degeneracy of the genetic code allows for the wobble to always result in the translation of the same amino acid.
- A complete set of codons can be read by fewer than 61 tRNAs.
tRNA
- tRNA molecules carry specific amino acids to the ribosome.
- tRNA molecules are encoded by different genes.
- There are 20 aminoacyl-tRNA synthases which "charge" the tRNA molecules.
- All tRNA molecules possess specific aa-tRNA synthetase recognition sites.
- tRNA molecules have a cloverleaf structure with an acceptor stem and an anticodon loop that binds to the mRNA codon.
Ribosomes
- The overall ribosome shape is determined by rRNA.
- Ribosomes are discrete in size.
- Ribosomes have two sites:
- P site (peptidyl site)
- A site (aminoacyl site)
- Ribosomes are essential for polypeptide synthesis.
Step 1- Charging of tRNA (aminoacylation)
- Amino acids are attached to tRNAs by aminoacyl-tRNA synthetase.
- There are 20 aminoacyl-tRNA synthases capable of charging all tRNAs.
- tRNA molecules possess specific aa-tRNA synthetase recognition sites.
- The process uses energy derived from ATP hydrolysis.
- This results in a charged tRNA called aminoacyl-tRNA.
Initiation, Elongation and Termination
-
Initiation:
- This stage involves assembly of a functional ribosome in the correct location on the mRNA molecule.
- The assembled ribosome is ready to begin protein synthesis.
-
Elongation:
- tRNA molecules bring the correct amino acid to the ribosome.
- The amino acid is joined to the growing polypeptide chain.
- The ribosome moves to the next codon on the mRNA.
-
Termination:
- This stage is triggered by the ribosome reaching a stop codon.
- The entire complex disassembles, releasing the newly synthesized polypeptide.
Prokaryotic vs Eukaryotic Translation
-
Prokaryotes:
- Translation occurs in the cytoplasm.
- Transcription and translation occur simultaneously.
- Translation begins at Shine-Dalgarno sequences.
- The initiating tRNA is formyl-methionine.
-
Eukaryotes:
- Translation occurs in the cytoplasm.
- Transcription and translation occur separately.
- Translation begins at the AUG codon, which is embedded in a short initiation sequence called the Kozak sequence.
- The initiating tRNA is methionine.
Initiation (Prokaryotes)
-
Binding of 30S subunit and initiation factors:
- Initiation factor 1 (IF1) associates with the 30S subunit in the A site, blocking tRNA entry.
- Initiation factor 3 (IF3) allows the 30S subunit to bind to the specific site on the mRNA.
- Initiation factor 2 (IF2) binds to the 30S P site, facilitating the binding of formylmethionine tRNA (fMet-tRNA) to IF2.
- IF2 moves fMet-tRNA to the P site.
- Hydrolysis of GTP occurs following the arrival of the 50S subunit, leading to a conformational change and forming a 70S ribosome.
Step 2- Initiation Steps (Prokaryotes)
- The Shine-Dalgarno sequence is complementary to the 3’ end of the 16S rRNA.
- The initiator tRNA (fMet tRNA) binds to the AUG start codon on the mRNA.
- IF3 is removed and recycled.
- IF1 and IF2 are released, and GTP is hydrolyzed, leading to the binding of the 50S rRNA subunit.
- This results in a 70S initiation complex comprising of mRNA, 70S ribosome, and fMet-tRNA.
Elongation
- The A site is empty.
- The P site contains the peptidyl tRNA.
- The E site contains an uncharged tRNA.
- Elongation requires elongation factors (EF-Tu, EF-Ts, and EF-G).
- EF-Tu-GTP: Recognizes and transports aminoacyl-tRNA to the A site of the ribosome.
- EF-Tu is released from the ribosome after GTP hydrolysis to GDP.
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Description
Explore the fascinating concepts of wobble base pairing, the structure and function of tRNA molecules, and the role of ribosomes in protein synthesis. This quiz covers important aspects such as the degeneracy of the genetic code and the specific recognition sites on tRNA. Test your knowledge on these fundamental topics in molecular biology.