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Questions and Answers

What type of mutation results from a base being inserted or deleted in a DNA sequence, which subsequently alters the entire amino acid sequence?

  • Transversion Mutation
  • Point Mutation
  • Missense Mutation
  • Frameshift Mutation (correct)
  • Which repair mechanism do DNA glycosylases specifically participate in?

  • Homologous recombination
  • Single-strand break repair
  • Nucleotide excision repair
  • Base excision repair (correct)
  • What is the term for a mutation that does not change the resulting amino acid due to a codon alteration?

  • Silent mutation (correct)
  • Non-sense mutation
  • Frameshift mutation
  • Gene duplication
  • What is the post-replicative DNA repair pathway commonly known as?

    <p>Mis-match repair pathway (A)</p> Signup and view all the answers

    Why does a mutation in the P53 gene increase cancer risk?

    <p>It prevents apoptosis from occurring. (D)</p> Signup and view all the answers

    Which of the following statements about the P53 protein is true?

    <p>It activates P21 protein. (A)</p> Signup and view all the answers

    What type of damage does UV radiation typically cause in DNA?

    <p>Dimers between adjacent pyrimidines (A)</p> Signup and view all the answers

    What is the likely cause of Xeroderma pigmentosum based on its relation to DNA repair?

    <p>Impaired nucleotide excision repair (A)</p> Signup and view all the answers

    What is the role of DNA gyrase during DNA replication?

    <p>To form breaks in DNA to relieve super-coiling (A)</p> Signup and view all the answers

    Which enzyme is specifically responsible for initiating RNA synthesis at the replication site?

    <p>Primase (C)</p> Signup and view all the answers

    How does DNA synthesis occur in terms of the direction of strand growth?

    <p>DNA is synthesized only in the 5' to 3' direction (D)</p> Signup and view all the answers

    What structures, indicated by the letter E in a DNA replication diagram, are involved in the process?

    <p>Okazaki fragments (B)</p> Signup and view all the answers

    What facilitates the movement of DNA molecules through agarose gel in electrophoresis?

    <p>The presence of negatively charged phosphates (A)</p> Signup and view all the answers

    Which of the following accurately describes how eukaryotic chromosomes are replicated?

    <p>Bidirectionally from multiple origins of replication (D)</p> Signup and view all the answers

    Which enzyme is mainly responsible for unwinding the DNA double helix during replication?

    <p>Helicase (A)</p> Signup and view all the answers

    What is a key reason for the specific directionality (5' to 3') of DNA synthesis?

    <p>Because DNA polymerases can only add nucleotides to the 3' end of the strand (B)</p> Signup and view all the answers

    What activates transcription in the lac operon when lactose is present?

    <p>Isomer of lactose binds to the repressor. (A)</p> Signup and view all the answers

    Which statement about eukaryotic gene expression is correct?

    <p>Control of the rate in which genes are transcribed is essential. (C)</p> Signup and view all the answers

    What is the correct sequence of structures in a typical mRNA molecule synthesized in a prokaryotic cell?

    <p>3' trailing sequences - Coding sequences - Termination signals - Leader sequences (A)</p> Signup and view all the answers

    What role does the regulatory region play in a bacterial operon?

    <p>It generally occurs at the 5' end and upstream of the structural genes. (A)</p> Signup and view all the answers

    What is a primary reason only one strand of DNA is used for transcription?

    <p>The template strand must be read in the 3' to 5' direction. (B)</p> Signup and view all the answers

    Which statement is true regarding introns in human genes?

    <p>They can be alternatively spliced to form different proteins. (B)</p> Signup and view all the answers

    What modification is made to the 3' end of eukaryotic pre-mRNA molecules?

    <p>Cutting and adding 100-250 adenine nucleotides. (B)</p> Signup and view all the answers

    Which of the following is false regarding DNA transcription?

    <p>Only exons are transcribed into mRNA. (D)</p> Signup and view all the answers

    Which of the following statements about the role of histone acetylases is accurate?

    <p>They promote DNA unwinding. (A)</p> Signup and view all the answers

    If thymine constitutes 25% of the bases in a DNA sample, what is the percentage of guanine in that sample?

    <p>25% (A)</p> Signup and view all the answers

    Which statement accurately describes the complement of the DNA strand 5'AGATCCG-3'?

    <p>3'-TCTAGGC-5' (C)</p> Signup and view all the answers

    Which of the following sugars is specifically found in RNA?

    <p>D-Ribose (D)</p> Signup and view all the answers

    Which of the following components is mismatched with its function in a gene?

    <p>Exons are non-coding sequences. (B)</p> Signup and view all the answers

    What is the function of RNA polymerase during transcription?

    <p>It reads the template strand from 3' to 5' and synthesizes RNA in 5' to 3'. (B)</p> Signup and view all the answers

    What abnormality is most likely linked to the shorter P53 protein in a 28-year-old man?

    <p>Point mutation that introduces a stop codon. (C)</p> Signup and view all the answers

    Which statement regarding mitochondrial DNA is incorrect?

    <p>It exists only in eukaryotic organisms. (D)</p> Signup and view all the answers

    What prevents the reformation of the double helix during DNA replication once the strands are separated?

    <p>Single-strand binding proteins (B)</p> Signup and view all the answers

    At which end does each Okazaki fragment begin?

    <p>5' end with a separate RNA primer (A)</p> Signup and view all the answers

    Which amino acid is virtually always found at the N-terminal of a newly-formed protein?

    <p>Methionine (C)</p> Signup and view all the answers

    What does the anticodon 3'-GAU-5' correspond to?

    <p>5'-CUA-3' (C)</p> Signup and view all the answers

    How does the first nucleotide at the 5' end of a new mRNA chain differ from other nucleotides in the chain?

    <p>It retains its triphosphate group (C)</p> Signup and view all the answers

    What is the role of elongation factor EF-Tu in translation?

    <p>To deliver aminoacyl-tRNA to the 'A' site (A)</p> Signup and view all the answers

    What does histone deacetylase do in relation to gene expression?

    <p>Suppresses gene expression by altering histone binding (D)</p> Signup and view all the answers

    Which of the following statements about the lac operon is false?

    <p>It promotes gene expression when glucose levels are high (D)</p> Signup and view all the answers

    Which dye is commonly used to visualize DNA on agarose gel under UV light?

    <p>Ethidium bromide (D)</p> Signup and view all the answers

    What are the genetic strands called that result from the separation of sister chromatids?

    <p>Daughter chromosomes (C)</p> Signup and view all the answers

    What group confers a negative charge to DNA molecules, aiding in agarose gel electrophoresis?

    <p>Phosphate groups (A)</p> Signup and view all the answers

    During which phase of meiosis do bivalent chromosomes align?

    <p>Metaphase (B)</p> Signup and view all the answers

    What key event in meiosis can lead to the formation of trisomies and monosomies?

    <p>Nondisjunction (D)</p> Signup and view all the answers

    Which statement about nondisjunction is NOT accurate?

    <p>It separates sister chromatids. (C)</p> Signup and view all the answers

    Which human disease is least likely to be linked with aneuploidy?

    <p>Fragile X syndrome (C)</p> Signup and view all the answers

    What is the final concentration of a 1M MgCl2 stock solution needed to achieve 8mM in a 25ul PCR reaction?

    <p>0.20 ul (A)</p> Signup and view all the answers

    Flashcards

    Frameshift Mutation

    A mutation that changes the reading frame of a gene, leading to a complete change in the amino acid sequence.

    Base Excision Repair

    This repair pathway specifically removes damaged or incorrect bases from DNA by using enzymes called DNA glycosylases.

    Silent Mutation

    A mutation that alters a codon but results in the same amino acid being coded for. This means no change to the protein sequence.

    Mis-match Repair

    A DNA repair pathway that corrects errors made during DNA replication. It acts after replication is complete.

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    P53 Tumor Suppressor Gene

    P53 is a crucial gene involved in cell cycle control and preventing tumor formation.

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    P53 Protein

    This protein is responsible for preventing the accumulation of DNA damage by slowing down the cell cycle.

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    Pyrimidine Dimers

    A type of DNA damage caused by UV radiation where two adjacent pyrimidine bases (usually thymine) bind to each other.

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    Xeroderma Pigmentosum

    This genetic disorder arises from defects in the nucleotide excision repair (NER) pathway, leading to an inability to repair UV-induced DNA damage.

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    Why does DNA synthesis only proceed in the 5' to 3' direction?

    DNA polymerase, an enzyme involved in DNA replication, can only add nucleotides to the 3' end of a growing polynucleotide strand.

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    What is the DNA replication fork?

    The replication fork is a Y-shaped structure that forms during DNA replication where both strands of DNA are replicated simultaneously.

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    Which enzyme separates the two strands of DNA during replication?

    Helicase is the enzyme responsible for separating the two strands of DNA during replication, breaking the hydrogen bonds holding them together.

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    What does DNA gyrase do?

    DNA gyrase is a topoisomerase enzyme that relieves stress on the DNA helix during replication by introducing breaks in the DNA to prevent supercoiling (knotting).

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    What are Okazaki fragments?

    The lagging strand is synthesized discontinuously in small fragments called Okazaki fragments.

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    How are the leading and lagging strands synthesized?

    The leading strand is synthesized continuously in the 5' to 3' direction, while the lagging strand is synthesized discontinuously in small fragments (Okazaki fragments) also in the 5' to 3' direction.

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    How are nucleotides produced?

    Nucleotides are the building blocks of DNA and RNA. They can be produced by the cell via two pathways: salvage pathways and synthetic pathways.

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    How are the chromosomes of a eukaryote cell replicated?

    DNA replication in eukaryotes starts at multiple origins of replication on each chromosome, and proceeds bidirectionally from each origin.

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    Cytosine percentage

    Cytosine makes up 25% of the bases in a DNA sample.

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    Purines and Pyrimidines

    DNA bases Guanine and Cytosine are a purine and a pyrimidine, respectively. Purines have a double-ring structure, while pyrimidines have a single-ring structure.

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    What does DNA attach to in a nucleosome?

    They are histone proteins.

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    RNA Polymerase Directionality

    The template strand is read in the 3' to 5' direction, and mRNA is synthesized in the 5' to 3' direction.

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    RNA Sugar

    D-Ribose is the sugar found in RNA. It differs from the deoxyribose sugar found in DNA by having an extra hydroxyl group.

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    False Mitochondria DNA Fact

    It is found in all eukaryotic cells.

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    Histone Acetylases

    Histone acetylases can influence DNA structure by opening up its conformation. This is because acetylation neutralizes the positive charge of histones, making them less tightly bound to DNA.

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    Atypical Feature of Eukaryotic Genes

    An operator region is a feature of prokaryotic gene regulation, not eukaryotic. It is a DNA sequence that binds to the repressor protein to control gene expression.

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    Lac Operon

    A regulatory mechanism in prokaryotes that controls the expression of genes involved in lactose metabolism. The operon is turned on in the presence of lactose, allowing the production of enzymes necessary for lactose breakdown.

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    Components of the Lac Operon

    The lac operon consists of three structural genes (lacZ, lacY, and lacA) that encode for proteins involved in lactose utilization. These genes are regulated by a promoter (where RNA polymerase binds) and an operator site (where the repressor protein binds).

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    Lac Repressor Protein

    A protein that binds to the operator region of the lac operon, blocking the transcription of the structural genes. In the absence of lactose, the repressor binds to the operator, preventing gene expression.

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    Inducer (Lactose)

    A molecule that binds to the repressor protein, changing its shape so that it cannot bind to the operator. This allows the transcription of the lac genes and the production of lactose-utilizing enzymes.

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    Transcription

    The process by which a gene is transcribed into RNA. This is the first step in gene expression where information from a DNA gene is copied into messenger RNA.

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    Promoter

    A sequence of DNA that signals the start of transcription. RNA polymerase binds to the promoter to initiate the process of copying DNA into RNA.

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    Messenger RNA (mRNA)

    A type of RNA that carries the genetic code from DNA to the ribosomes, where proteins are synthesized.

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    Translation

    The process of translating the genetic code carried by mRNA into a protein. This occurs at ribosomes, where amino acids are linked together to form a protein chain.

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    What prevents DNA strands from re-annealing during replication?

    Single-strand binding proteins bind to the separated DNA strands, preventing them from re-annealing and maintaining the single-stranded conformation necessary for replication.

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    What is the first component of each Okazaki fragment on the lagging strand?

    Each Okazaki fragment, a short DNA sequence synthesized in the 5' to 3' direction on the lagging strand, begins with an RNA primer. This primer provides the necessary 3'-OH group for DNA polymerase to initiate synthesis.

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    What is the first amino acid typically found in a newly formed protein?

    A newly-synthesized protein's first amino acid is usually methionine. This is because the start codon (AUG) codes for methionine, initiating the translation process.

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    What are the components of a ribosome?

    Ribosomes, the cellular machinery responsible for protein synthesis, are composed of two subunits: a large subunit and a small subunit. These subunits are composed of ribosomal RNA (rRNA) and proteins.

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    What molecule contains the anticodon?

    The anticodon, a three-nucleotide sequence in tRNA, is complementary to the mRNA codon. This pairing ensures the correct amino acid is added to the growing polypeptide chain.

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    What is the other strand called in DNA replication?

    The bottom strand, the sequence 3'CGC TAT TCG ACG CTT5', is referred to as the template strand in DNA replication. It acts as the template for the synthesis of the complementary strand.

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    What does EF-Tu do during translation?

    Elongation factor, EF-Tu, helps in the delivery of an aminoacyl-tRNA to the A-site of the ribosome. This step is crucial for protein synthesis and requires the hydrolysis of GTP for energy.

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    How many different aminoacyl-tRNA synthetases exist?

    There are 20 different aminoacyl-tRNA synthetases, each specifically recognizing and attaching a particular amino acid to its corresponding tRNA. This ensures the correct amino acid is added to the growing polypeptide chain.

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    How DNA is visualized in agarose gel?

    Ethidium bromide intercalates into DNA, allowing it to absorb UV light, making DNA bands visible under UV light.

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    What are daughter chromosomes?

    The two chromatids that make up a chromosome separate during meiosis II, each becoming a daughter chromosome.

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    What makes DNA migrate in an electric field?

    DNA has negative charges due to the phosphate groups on the sugar-phosphate backbone.

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    When do bivalent chromosomes occur?

    Bivalents are pairs of homologous chromosomes that have synapsed together during prophase I of meiosis. Bivalent chromosomes become visible at prometaphase.

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    What causes trisomies and monosomies?

    Non-disjunction is the failure of chromosomes to separate properly during either meiosis I or meiosis II. This can lead to aneuploidy, a condition where there is either an extra or missing chromosome.

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    How does the spindle assembly checkpoint work during cell division?

    The spindle assembly checkpoint is a critical control point that ensures proper chromosome attachment to the spindle fibers before sister chromatids are separated during mitosis and meiosis. Cohesin, securin, and separase are key proteins in this checkpoint.

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    What does nondisjunction NOT do?

    Nondisjunction is the failure of chromosomes to separate properly during cell division. This can lead to aneuploidy, where there is either an extra or missing chromosome. While nondisjunction causes abnormal chromosome separation, it doesn't differentiate maternal chromosomes from paternal ones.

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    Which karyotype is not compatible with life?

    A karyotype of 45, Y means that there is only one sex chromosome present, and it is a Y chromosome. This is incompatible with survival due to the lack of an X chromosome, essential for development.

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