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Questions and Answers
What role do repressor proteins play in gene expression regulation?
What role do repressor proteins play in gene expression regulation?
- They prevent transcription by binding to the operator. (correct)
- They enhance the stability of mRNA in the cytoplasm.
- They assist RNA polymerase in unwinding the DNA.
- They stimulate transcription by enhancing RNA polymerase binding.
Which component of an operon is directly responsible for binding RNA polymerase?
Which component of an operon is directly responsible for binding RNA polymerase?
- Regulatory gene
- Promoter (correct)
- Operator
- Structural gene
What effect does lactose have on the metabolism of E. coli?
What effect does lactose have on the metabolism of E. coli?
- It completely inhibits lactose metabolism.
- It acts as an inducer by stimulating enzyme production. (correct)
- It inhibits the transcription of related enzymes.
- It functions as a repressor of the operon.
In a gene regulatory system, what is the role of an operator?
In a gene regulatory system, what is the role of an operator?
Which of the following is NOT a component of an operon?
Which of the following is NOT a component of an operon?
How does positive regulation differ from negative regulation in gene expression?
How does positive regulation differ from negative regulation in gene expression?
What is the main function of structural genes in an operon?
What is the main function of structural genes in an operon?
What is the primary role of the lacZ gene in the lac operon?
What is the primary role of the lacZ gene in the lac operon?
What triggers the release of the repressor protein from the operator?
What triggers the release of the repressor protein from the operator?
Which component of the lac operon is typically responsible for binding RNA polymerase?
Which component of the lac operon is typically responsible for binding RNA polymerase?
What type of regulatory element is the repressor protein considered in the operon model?
What type of regulatory element is the repressor protein considered in the operon model?
What is the function of the lacA gene within the lac operon?
What is the function of the lacA gene within the lac operon?
How does the repressor protein inhibit transcription when bound to the operator?
How does the repressor protein inhibit transcription when bound to the operator?
In the absence of lactose, what is the typical state of the lac operon?
In the absence of lactose, what is the typical state of the lac operon?
What characteristic of the repressor protein allows it to interact with lactose?
What characteristic of the repressor protein allows it to interact with lactose?
Which structural gene encodes the protein responsible for transporting lactose into the E. coli cell?
Which structural gene encodes the protein responsible for transporting lactose into the E. coli cell?
What prevents the transcription of the lac operon in the absence of an inducer?
What prevents the transcription of the lac operon in the absence of an inducer?
What is the primary function of allolactose in the lac operon?
What is the primary function of allolactose in the lac operon?
What is the role of β-galactosidase in the lac operon?
What is the role of β-galactosidase in the lac operon?
Which condition leads to catabolite repression in the lac operon?
Which condition leads to catabolite repression in the lac operon?
How does the presence of lactose affect the activity of the lac operon?
How does the presence of lactose affect the activity of the lac operon?
In the lac operon, what is the consequence of the repressor molecule changing shape?
In the lac operon, what is the consequence of the repressor molecule changing shape?
What is NOT part of the lac operon structure?
What is NOT part of the lac operon structure?
What molecule signals the lac operon to be active when lactose is available?
What molecule signals the lac operon to be active when lactose is available?
What happens when the repressor is bound to allolactose?
What happens when the repressor is bound to allolactose?
What happens to the transcription rate of the lac operon in the presence of high lactose and low glucose?
What happens to the transcription rate of the lac operon in the presence of high lactose and low glucose?
Why is it energetically advantageous for E.coli to repress expression of tryptophan synthesis genes in the presence of tryptophan?
Why is it energetically advantageous for E.coli to repress expression of tryptophan synthesis genes in the presence of tryptophan?
What is the role of the allosteric repressor in the tryptophan operon?
What is the role of the allosteric repressor in the tryptophan operon?
In which of the following conditions is transcription of the lac operon maintained at a low rate?
In which of the following conditions is transcription of the lac operon maintained at a low rate?
What condition must be met for the tryptophan operon to be repressed?
What condition must be met for the tryptophan operon to be repressed?
What is the role of CAP in the regulation of the lac operon?
What is the role of CAP in the regulation of the lac operon?
How does glucose affect the cAMP levels in a cell?
How does glucose affect the cAMP levels in a cell?
What must occur for maximal transcription of structural genes in the lac operon?
What must occur for maximal transcription of structural genes in the lac operon?
What does cAMP bind to in order to initiate the positive control of transcription in the lac operon?
What does cAMP bind to in order to initiate the positive control of transcription in the lac operon?
What effect does the cAMP-CAP complex have on DNA structure?
What effect does the cAMP-CAP complex have on DNA structure?
What is the consequence of CAP not binding to the CAP-binding site?
What is the consequence of CAP not binding to the CAP-binding site?
Which enzyme is responsible for converting ATP to cAMP?
Which enzyme is responsible for converting ATP to cAMP?
In what condition is CAP able to exert positive control over transcription?
In what condition is CAP able to exert positive control over transcription?
What happens to the lac operon when glucose is present?
What happens to the lac operon when glucose is present?
What is the main function of the CAP-binding site?
What is the main function of the CAP-binding site?
Flashcards
Gene expression
Gene expression
The process of converting a gene's information into a functional product, typically a protein.
Promoter
Promoter
A DNA sequence where RNA polymerase binds to initiate transcription.
Repressor protein
Repressor protein
Regulatory protein that binds to DNA and prevents transcription.
Activator protein
Activator protein
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Negative regulation
Negative regulation
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Positive regulation
Positive regulation
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Operon
Operon
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What is the lac operon?
What is the lac operon?
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What is lactose?
What is lactose?
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Why is the lac operon important?
Why is the lac operon important?
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What is lacZ?
What is lacZ?
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What is lacY?
What is lacY?
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What is lacI?
What is lacI?
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What is the operator?
What is the operator?
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What is the promoter?
What is the promoter?
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How does lactose regulate the lac operon?
How does lactose regulate the lac operon?
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Catabolite activator protein (CAP)
Catabolite activator protein (CAP)
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Cyclic AMP (cAMP)
Cyclic AMP (cAMP)
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Adenylyl cyclase
Adenylyl cyclase
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High Glucose, High Lactose
High Glucose, High Lactose
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High Lactose, Low Glucose
High Lactose, Low Glucose
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Low Lactose, High or Low Glucose
Low Lactose, High or Low Glucose
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Tryptophan Operon
Tryptophan Operon
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Tryptophan Repressor Mechanism
Tryptophan Repressor Mechanism
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What is a Repressor protein?
What is a Repressor protein?
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What is the role of allolactose in the lac operon?
What is the role of allolactose in the lac operon?
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What is negative control?
What is negative control?
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What is Catabolite repression?
What is Catabolite repression?
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What is the role of CAP in the lac operon?
What is the role of CAP in the lac operon?
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What is the role of the operator in the lac operon?
What is the role of the operator in the lac operon?
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What is an inducer?
What is an inducer?
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What is a promoter?
What is a promoter?
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What is β-galactosidase?
What is β-galactosidase?
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Study Notes
Prokaryotic Gene Expression Regulation
- Gene expression begins at the promoter, where RNA polymerase binds to initiate transcription.
- Gene transcription must be selective.
- Two types of regulatory proteins bind to DNA (repressor and activator) to regulate gene expression.
- Negative regulation: Binding of a repressor protein prevents transcription.
- Positive regulation: An activator protein binds to DNA to stimulate transcription.
Lactose Metabolism in E. coli (Lac Operon)
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An operon is a functional unit of DNA containing a cluster of genes under the control of a single promoter.
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The lac operon in E. coli controls lactose breakdown.
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The operon consists of:
- Promoter: DNA sequence where RNA polymerase binds to initiate transcription.
- Operator: A segment of DNA that acts as a regulatory switch, controlled by a repressor protein (it's a regulatory region).
- Structural genes: Genes that code for proteins (LacZ, LacY, and LacA).
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LacZ encodes β-galactosidase, an enzyme that converts lactose to glucose and galactose.
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LacY encodes lactose permease, which transports lactose into the cell.
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LacA encodes transacetylase, involved in detoxifying certain compounds related to lactose metabolism.
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Genes are transcribed together into a single mRNA strand and translated together in the cytoplasm.
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Negative Control: The LacI repressor protein binds to the operator region preventing RNA polymerase from transcribing the structural genes when lactose is absent.
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Allolactose binds to the repressor in the presence of lactose, causing a conformational change in the repressor, the repressor is then released from the operator allowing RNA Polymerase to transcribe the operon and produce lac proteins.
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Positive Control: A regulatory protein called CAP (catabolite activator protein) is involved in regulating the operon.
- When glucose levels are low, cAMP levels are high.
- cAMP binds to CAP which binds to the promoter making it easier for RNA polymerase to bind, and increasing the rate of transcription of lac operon.
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When glucose is present, cAMP levels are low.
- CAP is unbound and cannot greatly enhance the rate of transcription.
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Summary of control: The lac operon is regulated by both negative and positive regulation: absence of lactose results in the repressor protein binding to the operator site blocking transcription; low glucose results in cAMP binding to CAP, enhancing binding of RNA polymerase, which increases transcription.
Tryptophan Metabolism in E. coli (Trp Operon)
- The trp operon controls tryptophan synthesis.
- The operon contains five structural genes (trpE, trpD, trpC, trpB, and trpA) that code for enzymes involved in tryptophan synthesis, and a regulatory gene trpR encoding a repressor protein that binds to the operator.
- Repressible operon:
- When tryptophan is present in sufficient amounts, the operon is repressed and tryptophan synthesis is stopped.
- Tryptophan binds to the repressor protein, causing a conformational change that enables the repressor to bind to the operator, preventing transcription.
- This is called repressible because the process can be switched from "on" to "off" (synthesizing/not synthesizing enzymes) based on the repressor.
- When tryptophan is absent, the repressor is inactive, and transcription occurs.
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