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Questions and Answers

What is the primary function of intermediate filaments in animal cells?

  • To produce ATP for cellular functions
  • To assist in cell division
  • To provide support for cells and tissues (correct)
  • To facilitate nutrient transport across cell membranes

Which step in the assembly of intermediate filaments involves the formation of a non-polar tetramer?

  • Formation of coiled-coil dimers
  • Joining of 8 tetramers
  • Staggering of two dimers (correct)
  • Addition of polypeptides to filament

Which type of protein forms the intermediate filaments in epithelial cells?

  • Neurofilaments
  • Lamin
  • Vimentin
  • Keratin (correct)

What structure serves as the primary site for microtubule assembly in non-dividing cells?

<p>Centrosome (C)</p> Signup and view all the answers

Which protein is crucial for correctly orienting the alpha and beta dimers during microtubule assembly?

<p>Gamma tubulin (C)</p> Signup and view all the answers

What occurs if intermediate filaments in epithelial cells are disrupted?

<p>Skin begins to blister (C)</p> Signup and view all the answers

What type of filament assembly occurs when 8 tetramers come together?

<p>Creation of a diameter structure (A)</p> Signup and view all the answers

Which intermediate filament is associated with nuclear structure in animal cells?

<p>Lamin (C)</p> Signup and view all the answers

What process regulates the growth and shrinkage of microtubules?

<p>Dynamic instability (D)</p> Signup and view all the answers

What is the effect of the GTP cap on microtubule dynamics?

<p>It encourages growth by stabilizing dimers. (C)</p> Signup and view all the answers

Which domain of actin is associated with ATP binding?

<p>Barbed end (B)</p> Signup and view all the answers

Which protein is involved in promoting the exchange of actin-ADP to actin-ATP?

<p>Profilin (A)</p> Signup and view all the answers

What is the main phenomenon that describes the addition and loss of actin subunits in microfilaments?

<p>Treadmilling (D)</p> Signup and view all the answers

What happens when the concentration of GTP dimers is low in a microtubule?

<p>The GTP cap is lost, causing disassembly. (D)</p> Signup and view all the answers

What is the primary role of the myosin motor protein during cell movement?

<p>To contract the cell by pushing actin filaments closer together (B)</p> Signup and view all the answers

Which of the following functions is NOT associated with actin filaments?

<p>Transport of organelles (C)</p> Signup and view all the answers

Which process is involved in the glycosylation of proteins in the ER?

<p>Addition of carbohydrate sequences (A)</p> Signup and view all the answers

What is the role of MAP proteins in relation to microtubules?

<p>Stabilize microtubules and prevent disassembly. (B)</p> Signup and view all the answers

Which type of protein is needed for vesicle formation of soluble ER proteins?

<p>Coat proteins (C)</p> Signup and view all the answers

What triggers the unfolded protein response (UPR) in a cell?

<p>Too many abnormally folded or unfolded proteins (C)</p> Signup and view all the answers

What modification occurs only in the lumen of the endoplasmic reticulum?

<p>Formation of disulfide bonds (B)</p> Signup and view all the answers

Which organelle is primarily responsible for degrading macromolecules within a cell?

<p>Lysosome (A)</p> Signup and view all the answers

What is the function of ARP â…” in cell movement?

<p>To initiate actin polymerization (A)</p> Signup and view all the answers

How do membrane proteins differ when being transported from the ER to the Golgi?

<p>They require a receptor to assist in vesicle formation (D)</p> Signup and view all the answers

What is the role of coat proteins in vesicular transport?

<p>To bind cargo and cause the membrane to pucker for vesicle formation. (B)</p> Signup and view all the answers

Which type of coat protein is required for transporting proteins from the ER to the Golgi?

<p>COP II (C)</p> Signup and view all the answers

What is the function of dynamin in vesicular transport?

<p>To pinch off vesicles from the membrane using ATP. (A)</p> Signup and view all the answers

How do vesicles recognize the correct target membrane?

<p>Through the interaction of Rab proteins and tethering proteins. (D)</p> Signup and view all the answers

What sequence do ER resident proteins have that allows COP I to transport them back to the ER?

<p>KDEL sequence (C)</p> Signup and view all the answers

What happens to coat proteins after vesicle budding occurs?

<p>They are removed, making receptors accessible. (C)</p> Signup and view all the answers

Which motor protein is most commonly involved in transporting vesicles to their destination?

<p>Kinesin (C)</p> Signup and view all the answers

What occurs during the fusion of a vesicle with the target membrane?

<p>Water is expelled and the membranes interconnect through V-snares and T-snares. (C)</p> Signup and view all the answers

What characterizes constitutive secretion?

<p>Occurs in an unregulated manner (A)</p> Signup and view all the answers

What is the first step in receptor-mediated endocytosis?

<p>Cargo binds to the LDL receptor (B)</p> Signup and view all the answers

Which cell signaling type involves hormones traveling through the bloodstream?

<p>Endocrine signaling (B)</p> Signup and view all the answers

Where are receptors for lipid-soluble signaling molecules typically located?

<p>Inside the cytoplasm (C)</p> Signup and view all the answers

Which of the following is a function of G proteins in signaling pathways?

<p>Hydrolyze GTP or exchange GDP to GTP (A)</p> Signup and view all the answers

What effect does phosphorylation have in signaling pathways?

<p>Alters the shape of proteins to enable signaling (B)</p> Signup and view all the answers

What is a potential outcome of altering protein synthesis in cells?

<p>Cell survival or death (B)</p> Signup and view all the answers

How do secondary messengers function in cellular signaling?

<p>Activate membrane-bound proteins (A)</p> Signup and view all the answers

What is the primary characteristic of paracrine signaling?

<p>Signals operate in a localized area (D)</p> Signup and view all the answers

Which type of signaling is characterized by membrane-bound signals that require direct contact with the target cell?

<p>Contact-dependent signaling (D)</p> Signup and view all the answers

What is the primary role of PKA in relation to glycogen synthase?

<p>To inactivate glycogen synthase, preventing glycogen formation (C)</p> Signup and view all the answers

Which mechanism is responsible for the inactivation of G-proteins?

<p>Removal of the signaling molecule and GTP hydrolysis (C)</p> Signup and view all the answers

What is the function of Pi3K in the RTK-AKT signaling pathway?

<p>To convert PIP2 to PIP3 (D)</p> Signup and view all the answers

What occurs after AKT is activated in the RTK-AKT pathway upon insulin binding?

<p>AKT facilitates the insertion of glucose transporters into the plasma membrane (C)</p> Signup and view all the answers

What is the consequence of AKT phosphorylating PP1?

<p>It deactivates phosphorylase kinase and glycogen phosphorylase, preventing glycogen breakdown (A)</p> Signup and view all the answers

What structural feature do RTKs exhibit when they bind signaling molecules?

<p>They dimerize and cross-phosphorylate each other (B)</p> Signup and view all the answers

What effect does the signaling molecule insulin have in the RTK-AKT pathway?

<p>It activates glucose transporters to reduce blood glucose levels (D)</p> Signup and view all the answers

What type of receptor is involved in the activation of AKT?

<p>Receptor tyrosine kinase (RTK) (B)</p> Signup and view all the answers

Flashcards

Intermediate Filaments

Structural components in animal cells, providing support and strength to cells and tissues.

Intermediate Filament Assembly

A step-wise process involving monomers forming dimers, tetramers, and finally, filaments.

Keratin Filaments

A type of intermediate filament found in epithelial tissues, helping cells adhere and resist stretching.

Vimentin Proteins

Intermediate filaments in connective tissues providing structural support.

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Microtubules

Largest cytoskeletal elements found in all eukaryotic cells, crucial for cell structure and movement.

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Microtubule Assembly

Initiated at microtubule-organizing centers (MTOCs), like centrosomes and basal bodies, using tubulin monomers.

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Centrosome

A microtubule-organizing center near the nucleus in non-dividing cells.

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Tubulin

Globular protein that forms the building block of microtubules, existing as alpha & beta dimers.

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Microtubule Dynamic Instability

Microtubules can grow or shrink rapidly in length. This process is controlled and regulated within the cell.

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GTP cap (Microtubules)

When GTP is high on a microtubule dimer, it promotes growth. GTP has higher affinity than GDP.

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Microtubule Growth

New GTP-bound dimers add to the microtubule's plus-end, causing it to elongate.

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Actin Filament Treadmilling

Actin filaments add monomers at the plus end and at the minus-end at the same time. The rate of addition to both ends is equal. This process maintains constant length

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Actin Filament Assembly

Actin filaments are formed from actin monomers that associate together to form a structure. ARP 2/3 are proteins involved in nucleation process

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Actin-ATP

Actin molecules bound to ATP has a higher affinity than ADP and are added to the plus end; thus, controlling Actin Treadmilling.

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Actin Filament Functions

Actin filaments are crucial for cell processes like cell division (cytokinesis) and movement (cell migration).

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Cell Motility

The ability of cells to move, involving a coordinated series of steps including actin polymerization at the front, adhesion to the extracellular matrix, contraction by myosin, and retraction at the back.

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ER Functions

The endoplasmic reticulum (ER) is involved in lipid and protein production, detoxification of drugs, and steroid hormone synthesis.

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Golgi Functions

The Golgi apparatus modifies and sorts proteins, packages them for transport, and produces non-glycerol containing phospholipids.

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Lysosome Function

Lysosomes are organelles that degrade macromolecules and organelles by breaking them down into smaller components, acting as the cell's recycling center.

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Disulfide Bond Formation

Disulfide bonds form between cysteine amino acids within proteins, only in the lumen of the ER and the extracellular matrix.

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Glycosylation

The process of adding carbohydrate sequences to proteins, often happening in the ER and important for protein function and targeting.

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ERAD

A quality control system within the ER that identifies and degrades misfolded proteins, ensuring that only correctly folded proteins leave the ER.

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UPR

The unfolded protein response (UPR) is activated when misfolded proteins accumulate in the ER, leading to a shutdown of protein production and potentially cell death.

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Vesicle Transport: Golgi to Plasma Membrane

Vesicles carrying cargo from the Golgi apparatus travel to the plasma membrane for release. This process can be regulated or constitutive.

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Constitutive Secretion

Unregulated release of cargo from the Golgi to the plasma membrane, occurring continuously at a moderate pace.

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Regulated Secretion

Release of cargo from the Golgi to the plasma membrane triggered by an external signal.

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Receptor-Mediated Endocytosis

A process where cells internalize specific molecules by binding to receptors on the plasma membrane, forming vesicles that are then transported to lysosomes.

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Endocrine Signaling

Hormones released into the bloodstream to act on distant target cells.

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Paracrine Signaling

Local signaling where a cell releases a signal to affect nearby cells.

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Synaptic Signaling

Specialized form of signaling in the nervous system where neurons communicate directly with each other via synapses.

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Contact-Dependent Signaling

Cells communicate by direct contact, with a membrane-bound signal requiring direct interaction with a receptor on another cell.

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Lipid-Soluble Signaling Molecules

These molecules can cross the cell membrane and bind to receptors inside the cell.

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Water-Soluble Signaling Molecules

These molecules bind to receptors on the cell membrane, initiating a signaling cascade.

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Vesicle Coating

The process where coat proteins bind to a membrane, causing it to pucker and form a vesicle. This is the first step in vesicular transport.

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Clathrin-mediated Vesicle Formation

A type of vesicle formation where clathrin coat proteins, with the help of adaptin, bind to receptors on the membrane to capture cargo.

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COP-mediated Vesicle Formation

A type of vesicle formation where COP proteins directly bind to receptors on the membrane, capturing specific cargo without adaptin.

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Dynamin Role in Vesicle Formation

Dynamin pinches off the vesicle from the membrane using energy from ATP. Think of it as the scissors that cut the bubble off the surface.

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Vesicle Transport: Destination Recognition

Rab proteins on the vesicle act as a postal code, binding to specific tethering proteins on the target membrane. This ensures the vesicle reaches the correct location.

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Vesicle Fusion: SNARE Proteins

V-SNAREs on the vesicle and t-SNAREs on the target membrane interact, pulling the vesicle close to the membrane and causing fusion. This releases the cargo into the target compartment.

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ER to Golgi Transport

COPII coat proteins are used to transport vesicles from the ER to the Golgi apparatus.

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Golgi to ER Transport

COPI coat proteins and dynein motor proteins are responsible for transport of proteins back from the Golgi to the ER.

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PKA's role in glycogen synthesis

PKA phosphorylates and inactivates glycogen synthase, the enzyme responsible for building glycogen from glucose. This prevents glucose storage as glycogen.

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Inactivation of G-proteins

G-proteins are inactivated by various mechanisms, including removal of signaling molecules, GTP hydrolysis, arrestin binding, and receptor endocytosis.

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What is Cyclic AMP phosphodiesterase?

Cyclic AMP phosphodiesterase is an enzyme that breaks down cyclic AMP (cAMP). By reducing cAMP levels, it ultimately decreases the activation of PKA and its downstream effects.

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What is RTK?

Receptor tyrosine kinase (RTK) is a type of enzyme-coupled receptor that plays a key role in cell signaling. It binds to signaling molecules and triggers a signaling cascade.

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How is AKT activated?

AKT is activated through a multi-step process: 1. Signaling molecules bind RTK. 2. RTK dimerizes and cross-phosphorylates. 3. Pi3K binds and is activated. 4. Pi3K phosphorylates PIP2 to PIP3. 5. PIP3 acts as a docking site for AKT and PK1, activating them. 6. Docked PK1 and cytosolic PK2 bind and activate AKT.

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How does RTK-AKT pathway decrease blood glucose?

The RTK-AKT pathway, triggered by insulin, lowers blood glucose by: 1. Promoting glucose uptake into cells by stimulating the insertion of glucose transporters. 2. Inactivating glycogen phosphorylase and phosphorylase kinase, thereby inhibiting glycogen breakdown.

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How does AKT affect glucose transport?

AKT phosphorylates proteins responsible for holding vesicles containing glucose transporter at the trans-Golgi. This leads to their release and insertion into the cell membrane, increasing glucose uptake.

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How does AKT affect glycogen breakdown?

AKT phosphorylates protein phosphatase 1 (PP1), which removes phosphate groups from phosphorylase kinase and glycogen phosphorylase. This deactivation prevents the breakdown of glycogen into glucose.

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Study Notes

Introduction to Cell Biology Exam #4

  • This exam covers material from Miami University's BIO 203 course.
  • It focuses on cell biology topics such as intermediate filaments, microtubules, dynamic instability, and the transport mechanisms involving proteins.

Intermediate Filaments

  • Found only in animal cells
  • Provide structural support to cells and tissues
  • Composed of many polypeptide chains
  • Assembly involves forming dimers, then tetramers, ultimately into stable filaments
  • Different types exist in different cell types (e.g., keratin in epithelial cells, vimentin in connective tissues)

Microtubules

  • Largest of the cytoskeletal filaments
  • Composed of tubulin dimers (alpha and beta)
  • Assemble at microtubule-organizing centers (MTOCs) like centrosomes
  • Exhibit dynamic instability, meaning they can grow and shrink rapidly
  • Involved in cell division, intracellular transport, and maintaining cell shape.

Dynamic Instability

  • A unique property of microtubules
  • Regulated growth and shrinking of microtubules as needed
  • GTP hydrolysis controls dynamic instability
  • The addition or removal of tubulin dimers happens at the + (positive) end
  • Critical concentration governs the rate of addition and removal of tubulin.

Cilia and Flagella

  • Microtubules are involved in their assembly and movement
  • Arrangement of 9 doublets of microtubules plus two singlet microtubules (9+2)
  • Motor proteins (e.g., dynein) and ATP are involved

Transport

  • Motor proteins (e.g., kinesin, dynein) move cargo along microtubules.
  • Cargo can include proteins, organelles, or vesicles
  • Cargo movement depends on motor protein direction relative to the plus and minus end of microtubules.

Endomembrane Functions

  • Involved in synthesis, modification, sorting, and transport of proteins and lipids
  • Includes the ER, Golgi, lysosomes, and other organelles.

Vesicle Formation

  • Coat proteins (like clathrin and COP proteins) are important for vesicle formation
  • Coat proteins bind to membrane proteins that need to be transported
  • This binding initiates the formation of a vesicle
  • Vesicles fuse with target membranes to deliver their cargo.

Cell Signaling

  • Endocrine, paracrine, and synaptic signaling are different types of communication between cells
  • They involve signaling molecules that bind to receptors on target cells
  • Signaling pathways involve protein activation and phosphorylation.
  • Water-soluble and lipid-soluble molecules have different mechanisms for binding.

G-protein Coupled Receptors (GPCRs)

  • Membrane receptors that interact with G proteins
  • Activation of GPCR results in G protein dissociation and activation of downstream signaling pathways
  • G proteins are involved in both fast and slow responses.

Enzyme-coupled receptors (RTKs)

  • Transmembrane receptors which involve a phosphorylation cascade.
  • Activated receptors lead to the activation of secondary signaling molecules
  • Receptors are involved in intracellular signaling and regulate various cellular activities like protein synthesis or cell death.

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