Extracellular Components and Cell Walls
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Questions and Answers

Which structure of a virus is responsible for protecting its genetic material and aiding in the attachment to host cells?

  • Tail fibers
  • Nucleocapsid
  • Envelope (correct)
  • Capsid
  • What is the primary shape characteristic of a helical virus?

  • Many-sided geometric shape
  • Twisted capsid enclosing genetic material (correct)
  • Head and tail fiber structure
  • Spherical with spike proteins
  • How do enveloped viruses obtain their external membrane?

  • Through mutation of host cell membranes
  • From viral protein assembly
  • From the host cell during replication (correct)
  • By synthesizing it independently
  • Which type of virus contains no envelope and is often more stable in environmental factors?

    <p>Naked virus (D)</p> Signup and view all the answers

    What is the role of the spike proteins found on spherical viruses like coronaviruses?

    <p>To facilitate attachment and entry into host cells (B)</p> Signup and view all the answers

    What happens to glucose transporters when insulin levels drop?

    <p>They are removed from the plasma membrane by endocytosis. (C)</p> Signup and view all the answers

    How does the facilitated diffusion of glucose differ from simple diffusion?

    <p>It uses transport proteins that can become saturated. (D)</p> Signup and view all the answers

    What is the role of the antiporter adenine nucleotide translocase in mitochondria?

    <p>It moves ADP into mitochondria and ATP out. (B)</p> Signup and view all the answers

    What defines active transport as opposed to passive transport mechanisms?

    <p>It moves substances against their concentration gradient using energy. (B)</p> Signup and view all the answers

    What limits the maximum rate of facilitated diffusion?

    <p>The number of transport proteins available in the membrane. (C)</p> Signup and view all the answers

    What structural configuration gives collagen its extra strength?

    <p>Triple helix formation (C)</p> Signup and view all the answers

    How do fibronectins function in relation to collagen fibers?

    <p>They connect collagen fibers to cellular membranes (B)</p> Signup and view all the answers

    What role does the cytoskeleton play in a cell?

    <p>Maintaining shape and structure of the cell (D)</p> Signup and view all the answers

    What is a consequence of a mutation that affects collagen's triple helix structure?

    <p>Muscle weakness and joint issues (D)</p> Signup and view all the answers

    Which of the following best describes the cytoskeleton?

    <p>A network of proteins that can disassemble (A)</p> Signup and view all the answers

    In which cellular process is the cytoskeleton particularly important?

    <p>Cell division (B)</p> Signup and view all the answers

    How does the cytoskeleton respond to mechanical stimulation from extracellular molecules?

    <p>It transmits signals into the cell (D)</p> Signup and view all the answers

    What is the primary function of collagen in connective tissue?

    <p>Providing structural support (D)</p> Signup and view all the answers

    Which of the following accurately describes the genome of COVID-19?

    <p>It consists of a single-stranded RNA genome. (C)</p> Signup and view all the answers

    What is the primary function of the enzyme reverse transcriptase in HIV?

    <p>It makes a double-stranded DNA copy of the viral RNA genome. (B)</p> Signup and view all the answers

    Which of the following statements about the lytic cycle is true?

    <p>It results in the immediate destruction of the host cell. (B)</p> Signup and view all the answers

    What type of virus is HIV classified as?

    <p>Retrovirus (A)</p> Signup and view all the answers

    How does receptor-mediated fusion facilitate viral entry into host cells?

    <p>It results in the direct injection of the viral genetic material. (B)</p> Signup and view all the answers

    What is the capsid structure of HIV described as?

    <p>Cone-shaped and unusual (C)</p> Signup and view all the answers

    What is a key characteristic of zoonotic diseases?

    <p>They are infectious diseases that can be transmitted from animals to humans. (C)</p> Signup and view all the answers

    Which cellular component is primarily targeted by viruses during infection?

    <p>Host cell machinery (B)</p> Signup and view all the answers

    What process allows glucose to move from the intestinal lumen to epithelial cells against its concentration gradient?

    <p>Active transport (D)</p> Signup and view all the answers

    How is glucose reabsorbed in the nephrons of the kidneys?

    <p>Using Na+ dependent glucose cotransporters (D)</p> Signup and view all the answers

    Which statement is TRUE about facilitated diffusion?

    <p>It requires specific transport proteins. (C)</p> Signup and view all the answers

    What is the main function of vesicles in cellular transport?

    <p>Movement of large molecules when they cannot pass through channels (A)</p> Signup and view all the answers

    What type of endocytosis engulfs solid particles?

    <p>Phagocytosis (A)</p> Signup and view all the answers

    What facilitates the movement of Na+ ions in the context of glucose transport?

    <p>Electrochemical gradient (A)</p> Signup and view all the answers

    Which mechanism is NOT a form of endocytosis?

    <p>Facilitated diffusion (B)</p> Signup and view all the answers

    What is the role of ATP in vesicular transport?

    <p>To perform the pinching off of vesicles (A)</p> Signup and view all the answers

    What does cytosis refer to in cellular biology?

    <p>Movements of vesicles across the membrane (A)</p> Signup and view all the answers

    What condition is required for the simultaneous transport of Na+ and glucose?

    <p>Exergonic process of Na+ ions (D)</p> Signup and view all the answers

    What is the significance of the diaminopurine modification in some bacteriophage DNA?

    <p>It enhances the stability of DNA against host attacks. (D)</p> Signup and view all the answers

    Why do RNA viruses, such as HIV and influenza, evolve at a faster rate than DNA viruses?

    <p>They replicate their genetic material using error-prone mechanisms. (C)</p> Signup and view all the answers

    What causes antigenic shift in the influenza virus?

    <p>Reassortment of RNA segments from different strains. (D)</p> Signup and view all the answers

    How do new variants of SARS-CoV-2 arise?

    <p>Through mutations and genetic recombination. (B)</p> Signup and view all the answers

    What is the role of reverse transcriptase in HIV?

    <p>It converts viral RNA into DNA for integration into the host genome. (B)</p> Signup and view all the answers

    What characteristic of the influenza virus contributes to its high mutation rate?

    <p>The presence of segmented RNA genomes. (A)</p> Signup and view all the answers

    Which surface proteins are involved in the influenza virus infection process?

    <p>Hemagglutinin (HA) and neuraminidase (NA). (C)</p> Signup and view all the answers

    What primarily makes the HIV virus highly variable?

    <p>High mutation rates due to error-prone reverse transcriptase. (B)</p> Signup and view all the answers

    What is the consequence of antigenic drift in influenza viruses?

    <p>Gradual change in virus surface antigens. (D)</p> Signup and view all the answers

    How do retroviruses like HIV evade the host immune system?

    <p>By changing their envelope proteins frequently. (B)</p> Signup and view all the answers

    Why do segmented genomes give rise to new strains of the influenza virus?

    <p>They allow mixing of RNA segments from different viral strains. (A)</p> Signup and view all the answers

    What is a primary factor that contributes to the difficulty of treating RNA viruses?

    <p>Their high mutation rates. (D)</p> Signup and view all the answers

    What role do spike proteins play in SARS-CoV-2?

    <p>They facilitate recognition and fusion with host cells. (B)</p> Signup and view all the answers

    Flashcards

    Viral Structure: Shape

    Viruses have diverse shapes determined by their nucleocapsid. These shapes can be helical, polyhedral, spherical, or complex.

    Viral Structure: Naked Virus

    A naked virus lacks an envelope, which is a lipid membrane surrounding the nucleocapsid. This can make them resistant to environmental factors.

    Viral Structure: Enveloped Virus

    An enveloped virus has a phospholipid bilayer envelope containing viral proteins taken from the host cell. This helps with protection and entry into new cells.

    Viral Replication: Budding

    Budding is the process by which enveloped viruses exit host cells. They acquire a membrane from the host cell.

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    Viral Replication: Dormant state

    Some viruses can become dormant, or inactive, inside a host cell and avoid being detected. They later reactivate.

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    Collagen Structure

    A large, strong protein forming fibrils by intertwining three polypeptide strands (triple helix). It's abundant in connective tissue and extracellular matrix.

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    Collagen Function

    Provides structural support and strength to connective tissues like tendons and ligaments, and is part of the extracellular matrix.

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    Fibronectin Function

    An insoluble fiber that links collagen to cell membranes via transmembrane proteins (integrins).

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    Cytoskeleton Composition

    A network of protein filaments, not an organelle, found throughout the cell, providing structural support, and enabling movement.

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    Cytoskeleton Function 1

    Provides structural support for the cell and organelles. Maintains cell shape and internal organization.

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    Cytoskeleton Function 2

    Enables cell movement and internal transport (of organelles, vesicles).

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    Cytoskeleton Dynamics

    The cytoskeleton isn't a fixed structure; it can assemble and disassemble as needed.

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    Extracellular Signal Transmission

    Forces from outside the cell are transmitted through cell surface proteins into the cell by cytoskeletal elements, even reaching the nucleus.

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    COVID-19 Replication

    COVID-19, a coronavirus, uses endocytosis or receptor-mediated fusion to enter human cells, then replicates its RNA genome to create new viruses, which are released when the host cell bursts.

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    HIV Replication

    HIV, a retrovirus, converts its RNA genome into DNA, which is incorporated into the host cell's DNA. New viruses are then assembled and released from the host cell.

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    Viral Entry Methods

    Viruses, like COVID-19, can enter host cells by endocytosis or receptor-mediated fusion.

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    Lytic Cycle

    Viral replication method where the virus immediately takes over the host cell's machinery to create new viruses, which burst out of the host cell, killing it.

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    Viral Replication Reproduction

    Two main methods of viral genome reproduction inside a host cell are: Lytic Cycle and Lysogenic Cycle. In Lytic, the virus immediately replicates, and in Lysogenic, the viral genome integrates into the host cell's DNA.

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    Coronavirus Structure

    Coronaviruses are enveloped RNA viruses. Their structure includes a prominent spike protein on the surface.

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    Retrovirus Structure

    Retroviruses, like HIV, are enveloped RNA viruses with cone-shaped capsids and an enzyme called reverse transcriptase which converts RNA to DNA.

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    HIV Host Cell

    HIV targets T-helper cells in the human immune system for replication.

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    Facilitated Diffusion: Rate

    Facilitated diffusion relies on transport proteins, increasing the speed of substrate diffusion. However, since these transporters have a limited number, they reach a maximum rate, where all available proteins are occupied.

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    Active Transport: Definition

    Active transport moves substances against their concentration gradient. This process requires metabolic energy, typically obtained from ATP breakdown.

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    Coupled Transport

    Active transport can be driven by coupling the movement of a substance against its gradient with another substance moving down its gradient, releasing energy.

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    Glucose Transport: Insulin Effect

    Insulin's presence increases the number of glucose transporters in the plasma membrane by promoting their movement from intracellular vesicles. This process enhances glucose uptake, especially after a meal.

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    Glucose Transport: Removal

    After insulin levels drop, glucose transporters are removed from the plasma membrane by endocytosis. They are packaged into vesicles and recycled back to the surface when insulin levels rise again.

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    Glucose Transport in Intestines

    After digestion, glucose needs to move from the intestinal lumen into epithelial cells against its concentration gradient, requiring energy. This energy is provided by simultaneous Na+ transport down its electrochemical gradient.

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    Glucose Reabsorption in Kidneys

    In the nephrons of kidneys, glucose is filtered from blood. To prevent loss, glucose is reabsorbed from the renal filtrate with the help of Na+ dependent glucose cotransporters on kidney epithelial cells.

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    What is Influx?

    Influx refers to the flow of particles into a cell or compartment.

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    What is Efflux?

    Efflux refers to the flow of particles out of a cell or compartment.

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    Facilitated Diffusion vs. Active Transport

    Facilitated diffusion uses transport proteins to move molecules down their concentration gradient (no energy required). Active transport moves molecules against their concentration gradient, requiring energy.

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    Simple Diffusion

    Simple diffusion is the passive movement of molecules across a membrane based on their size and hydrophobicity/hydrophilicity.

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    Vesicle Transport

    Vesicles are small membrane sacs that transport large molecules (proteins, polysaccharides) across cell membranes.

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    Endocytosis

    Endocytosis is the process of cells engulfing particles by forming vesicles from the plasma membrane.

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    Phagocytosis

    Phagocytosis is the engulfment of solid particles by cells, like bacteria or debris.

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    Pinocytosis

    Pinocytosis is the engulfment of liquid droplets by cells.

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    What is N.equitans?

    N.equitans is a hyperthermophile that is a parasite of another hyperthermophile. It lacks genes for metabolism, relying on its host for its metabolic functions.

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    Viruses: Origin Theories

    One theory suggests viruses may have evolved from intra-parasitic bacteria that lost their ability to live independently, relying on hosts for reproduction and losing more and more functions, resulting in smaller genomes.

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    Diaminopurine (Z)

    Some bacteriophages use a modified base, diaminopurine (Z), instead of adenine in their DNA. This makes the DNA more heat-stable and protects against host attack.

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    Convergent Evolution in Viruses

    Structural similarities in viruses might result from convergent evolution, where different viruses independently adapt similar traits in similar environments or under similar pressures.

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    Rapid Virus Evolution

    Viruses evolve at a significantly faster rate than most organisms due to factors like high mutation rates, genetic exchange, and short generation times.

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    Error-prone Viral Replication

    RNA viruses often have high mutation rates because they use error-prone enzymes like reverse transcriptase, which are less accurate than DNA polymerases.

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    HIV's Enzyme and Gene Roles

    HIV, a retrovirus, uses enzymes like reverse transcriptase for DNA synthesis and integrase for integration into the host genome. Its genome contains genes for structural proteins, replication enzymes, and envelope proteins.

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    HIV's High Mutation Rate

    HIV has the highest known mutation rate among viruses, driven by error-prone reverse transcriptase and host enzymes like cytidine deaminase, which can introduce mutations.

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    SARS-CoV-2 Spike Protein

    The spike proteins on SARS-CoV-2 are crucial for recognizing host cells and fusing with the host cell membrane.

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    SARS-CoV-2 Variants

    SARS-CoV-2, due to rapid replication and mutations, generates new variants through changes in its RNA sequence. Some variants can be more transmissible or evade immune responses.

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    Influenza Virus Enzymes

    Influenza virus uses enzymes like RNA-replicase (RNA-dependent polymerase) to make more RNA strands and RNA-endonuclease to cut RNA. RNA polymerase lacks proofreading, leading to high mutation rates.

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    Influenza Virus Antigenic Drift

    Influenza viruses undergo antigenic drift, subtle changes in their surface antigens (HA and NA), due to mutations. This can diminish host immunity, leading to reinfection.

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    Influenza Virus Antigenic Shift

    Antigenic shift in influenza occurs when segments of RNA genomes from different strains reassort within a host, creating a new virus with unique surface antigens.

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    Cladogram for Virus Classification

    A cladogram, based on similarities in RNA genome sequences, can be used to classify and understand the evolutionary relationships between different viruses.

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    Study Notes

    Extracellular Components

    • Found outside the cell membrane
    • Provide shape, protection, and support to cells
    • Vary across different cell types
    • Bacteria: peptidoglycan
    • Archaea: pseudopeptidoglycan
    • Plant cells: cellulose
    • Fungi: chitin
    • Yeast: glucan and mannan
    • More rigid than the extracellular matrix of animal cells
    • Plant cell walls are multilayered:
      • Primary cell wall: thin, flexible, allows growth.
      • Secondary cell wall: added later, strengthens the cell (durable).
      • Middle lamella: pectin layer between primary cell walls, "gluing" cells together.
    • Plasmodesmata: holes in cell walls, connect cytoplasm of adjacent cells.
    • Facilitate the transfer of molecules between cells
    • Facilitated transfer of molecules through channels

    Cell Wall

    • Plant cells: cellulose, a strong polymer of glucose.
    • Cellulose microfibrils = provide tensile strength
    • Primary cell wall is thin and flexible, allowing cell growth
    • Cross-linking with pectin hardens cell walls
    • Middle lamella holds cells together
    • Secondary cell wall contains lignin, contributing to durability

    Facilitated Transfer of Molecules

    • Cellulose made of β-glucose molecules, connected by glycosidic bonds
    • Strong hydrogen bonds hold the chains together
    • Provides high tensile strength to plant cells
    • Microfibrils provide resistance to osmotic pressure and turgor pressure (the internal pressure)
    • Important for maintaining cell shape and structural support.

    Extracellular Matrix (Animal Cells)

    • Composed of water, proteoglycans, large fibrous proteins (e.g., collagen), and integrins
    • Provides structural support and guides the development of tissues
    • Supports cell communication and interactions

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