Enzymes: Induced Fit vs Lock and Key Model

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Questions and Answers

How does the induced fit model explain enzyme specificity differently from the lock and key model, and what advantage does this offer in terms of the range of substrates an enzyme can act upon?

The induced fit model explains enzyme specificity through conformational changes that allow the enzyme to interact with multiple substrates from the same family, whereas the lock and key model proposes a rigid active site that fits only one specific substrate. This allows the induced fit model to account for enzymes that catalyze reactions with several molecules from the same family, offering a broader range of activity compared to the lock and key model.

Describe a scenario in which environmental conditions cause an enzyme to denature, and explain how denaturation affects the enzyme's function at the molecular level.

Exposure to excessively high temperatures, such as during a prolonged fever, can cause an enzyme to denature. Denaturation disrupts the enzyme's tertiary and secondary structures, which are critical for maintaining the precise shape of the active site. This distortion prevents the substrate from binding effectively, leading to a loss of catalytic activity.

Explain how altering the amino acid sequence of an enzyme through genetic mutation could affect its substrate specificity and catalytic activity?

Changing the amino acid sequence can alter the shape and chemical properties of the active site, affecting its ability to bind the substrate. Mutations can lead to decreased substrate binding affinity, slower catalytic rates, or even complete loss of function. In some cases, mutations can broaden substrate specificity, allowing the enzyme to interact with different substrates.

Describe the roles of cofactors and coenzymes in enzyme catalysis, and provide examples of each, explaining how they contribute to enzyme function.

<p>Cofactors are inorganic ions or metal ions that help enzymes catalyze reactions, like $Mg^{2+}$ for DNA polymerase. Coenzymes are organic molecules often derived from vitamins, such as NAD+ which assists dehydrogenases by carrying electrons. They both contribute by participating directly in the catalytic mechanism providing the enzyme with the chemistry it needs to perform its function effectively.</p> Signup and view all the answers

How do catabolic and anabolic pathways work together to manage energy and building blocks within a cell?

<p>Catabolic pathways break down complex molecules into simpler ones, releasing energy that is often captured in the form of ATP. Anabolic pathways use this energy (ATP) and simple molecules to construct more complex molecules, such as proteins and nucleic acids. Thus, catabolism provides the energy and building blocks required for anabolism, creating a cycle that supports cellular growth and maintenance.</p> Signup and view all the answers

How can the principles of enzyme kinetics be applied in drug development, specifically in the design of enzyme inhibitors, and what considerations are important for creating effective pharmaceutical drugs?

<p>Enzyme kinetics principles are used to design drugs that selectively inhibit specific enzymes, disrupting disease-related pathways. Effective drugs must exhibit high affinity for the target enzyme ($K_m$) to ensure potency at low doses. Important considerations include the drug's specificity and its ability to minimize off-target effects which helps reduce toxicity and side effects, as well as its metabolic stability and bioavailability to ensure it reaches the target tissue without being rapidly broken down.</p> Signup and view all the answers

What are the implications of enzyme compartmentalization within cellular organelles for metabolic regulation and efficiency?

<p>Enzyme compartmentalization concentrates enzymes and substrates within specific organelles, which enhances reaction rates by increasing local concentrations and prevents interference from competing reactions in other cell areas. This arrangement also facilitates the efficient channeling of metabolic intermediates between enzymes and protects the rest of the cell from toxic intermediates.</p> Signup and view all the answers

How do competitive and non-competitive inhibitors affect an enzyme-catalyzed reaction differently, and what kinetic parameters ($K_m$ and $V_{max}$) are altered by each type of inhibitor?

<p>Competitive inhibitors bind to the active site of the enzyme, increasing $K_m$ (decreased affinity) but not affecting $V_{max}$ because the enzyme can still reach its maximum rate with sufficiently high substrate concentrations. Non-competitive inhibitors bind elsewhere on the enzyme, reducing $V_{max}$ but not affecting $K_m$ because they do not interfere with substrate binding.</p> Signup and view all the answers

Enzymes are biological catalysts. What is meant by the term catalyst?

<p>Catalysts are substances that speed up chemical reactions without being consumed or permanently altered in the process. They lower the activation energy required for the reaction to occur.</p> Signup and view all the answers

Contrast the lock and key model with the induced fit model of enzyme-substrate interaction and discuss the advantages and limitations of each in explaining enzyme specificity and catalytic mechanisms.

<p>The lock and key model proposes a rigid active site that perfectly matches the substrate, while the induced fit model suggests the active site changes shape upon substrate binding. The lock and key model is simple but doesn't account for enzyme flexibility, which explains enzyme specificity. However, it cannot explain the transition state stabilization. The induced fit more accurately describes the conformational changes.</p> Signup and view all the answers

Explain why enzymes are important for maintaining life and what problems can occur if enzyme activity is disrupted?

<p>Enzymes are essential for life because they catalyze nearly all biochemical reactions in the body, increasing the rate of metabolic and physiological processes. If enzyme activity is disrupted, metabolic pathways can malfunction, leading to diseases, developmental abnormalities, and other health problems.</p> Signup and view all the answers

How does pH affect enzyme activity, and provide an example of an enzyme that functions optimally at a specific, non-neutral pH?

<p>Extreme pH levels can denature enzymes by disrupting the ionic and hydrogen bonds that maintain their three-dimensional structure, altering the shape of the active site, and impairing substrate binding. Pepsin, found in the stomach, functions optimally at a highly acidic pH (around 2).</p> Signup and view all the answers

How does temperature affect enzyme activity, and why does excessive heat typically lead to enzyme denaturation?

<p>Enzyme activity generally increases with temperature up to a point, as higher temperatures provide more kinetic energy for the molecules, increasing the number of effective collisions between enzymes and substrates. However, excessive heat can disrupt hydrogen bonds and hydrophobic interactions, which leads to denaturation changing the shape of the active site and disrupting its function.</p> Signup and view all the answers

Explain what would happen if a cell was unable to produce enzymes?

<p>If a cell was unable to produce enzymes, nearly all its biochemical reactions would occur too slowly to sustain life including the breaking down of nutrients for energy, the synthesis of essential molecules and the removal of waste. The disruption of metabolic pathways would lead to severe metabolic disorders and the cell would not survive.</p> Signup and view all the answers

Flashcards

Enzymes

Biological catalysts that increase or decrease reaction rates between substrates, remaining unchanged and reusable after the reaction.

Active site determination

The shape of an enzyme's active site is determined by its amino acid sequence and folding.

Induced Fit Model

Model where the enzyme's active site and substrate adjust to achieve optimal binding and catalytic efficiency.

Lock and Key Model

Model where the enzyme's active site and substrate are perfectly complementary and rigid.

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Catabolic

Breaks down big molecules into smaller ones.

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Anabolic

Converts simple molecules into more complex molecules.

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Study Notes

  • Enzymes are biological catalysts.
  • Enzymes speed up or slow down reactions between substrates.
  • Enzymes remain unchanged after a reaction.
  • Enzymes can be reused.

Induced Fit Model

  • The enzyme's active site and substrate are not perfectly complementary in shape
  • When the substrate enters the active site, both the enzyme and substrate change shape for optimal binding
  • The substrate enters the enzyme’s active site, forming an enzyme-substrate complex.
  • The enzyme changes shape, which converts the substrate into product, forming an enzyme-product complex.
  • The product is released from the enzyme’s active site.

Lock and Key Model

  • The enzyme's active site and the substrate are perfectly complementary.
  • The active site is rigid, and the substrate is shaped to fit exactly.
  • Enzyme is the lock and the substrate is the key.
  • The substrate binds to the enzyme's active site, forming an enzyme-substrate complex.
  • The enzyme converts the substrate into product, forming an enzyme-product complex.
  • The product is released from the enzyme’s active site.

Comparing the Two Models

  • The lock and key model explains why enzymes are highly specific.
  • Each enzyme only catalyzes a reaction with a single substrate under the lock and key model.
  • Not all enzymes catalyze a single chemical reaction.
  • Some enzymes catalyze reactions with several molecules from the same family.
  • Only the induced fit model explains the reaction of enzymes with several molecules from the same family.
  • The induced fit model explains how catalysis occurs.
  • The conformational change puts stress on the bonds within the substrate, allowing bonds to break and form new products.

Catabolic vs Anabolic

  • Catabolic reactions break down large molecules into smaller molecules.
  • Anabolic reactions convert simple molecules into more complex molecules.

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