Enzyme Specificity and Function
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Questions and Answers

What is the transition state in a chemical reaction?

  • A state where reactants are transformed into products
  • The energy needed to maintain a reaction
  • The point of maximum energy during a reaction (correct)
  • The energy required to start a reaction

What role do enzymes play in chemical reactions?

  • They convert products back to reactants
  • They reduce the activation energy needed for reactions (correct)
  • They increase the activation energy requirement
  • They directly participate in the chemical changes

Which type of specificity describes enzymes that act only on one specific substrate?

  • Absolute specificity (correct)
  • Relative specificity
  • Group specificity
  • Streospecificity

What defines relative specificity in enzyme action?

<p>Acting on chemically related compounds but at different rates (B)</p> Signup and view all the answers

D-amino acid oxidase is an example of which type of enzyme specificity?

<p>Streospecificity (B)</p> Signup and view all the answers

Which enzyme is correctly matched with its substrate?

<p>Lactase - Lactose (C)</p> Signup and view all the answers

How does pepsin demonstrate group specificity?

<p>It targets specific peptide bonds in aromatic amino acids (A)</p> Signup and view all the answers

What describes the activation energy of a chemical reaction?

<p>The energy needed to start the reaction (D)</p> Signup and view all the answers

What is a primary characteristic that distinguishes enzymes from inorganic catalysts?

<p>Enzymes are specific in their reactions (D)</p> Signup and view all the answers

Which of the following correctly describes enzyme nomenclature?

<p>Enzymes are usually named by adding –ase to the substrate name (C)</p> Signup and view all the answers

What is one way enzymes can exhibit their functionality?

<p>They remain unchanged after the reaction (A), They can form a complex with substrates (B)</p> Signup and view all the answers

What is the significance of the enzyme code (EC)?

<p>It provides a systematic way to classify and describe enzymes (A)</p> Signup and view all the answers

How do enzymes typically achieve an increase in reaction rate?

<p>By forming an enzyme-substrate complex (A)</p> Signup and view all the answers

What role do activators play in enzymatic activity?

<p>They can enhance or facilitate enzyme activity (B)</p> Signup and view all the answers

What is a distinguishing property of inorganic catalysts compared to enzymes?

<p>Inorganic catalysts do not require an activator (D)</p> Signup and view all the answers

Which of the following statements about enzyme action is correct?

<p>Enzymes can participate in multiple reactions simultaneously (B)</p> Signup and view all the answers

What is the primary role of carboxypeptidase in peptide digestion?

<p>Acting on the carboxylic end of a peptide chain (D)</p> Signup and view all the answers

Which factor does NOT affect enzyme activity?

<p>Color of the enzyme (B)</p> Signup and view all the answers

What does the Michaelis-Menten constant (Km) represent?

<p>The substrate concentration at half maximum velocity (A)</p> Signup and view all the answers

What type of specificity does an enzyme with dual specificity exhibit?

<p>It acts on two different substrates producing two different products (A)</p> Signup and view all the answers

How does increasing enzyme concentration affect the reaction rate?

<p>It increases the reaction rate until substrate is depleted (A)</p> Signup and view all the answers

Which of the following factors does NOT typically influence enzyme activity?

<p>Shape of the enzyme (B)</p> Signup and view all the answers

What happens when the substrate concentration reaches Km?

<p>50% of the active sites of the enzyme are occupied (A)</p> Signup and view all the answers

Which statement about isocitrate dehydrogenase is correct?

<p>It acts on isocitrate producing ketoglutarate by decarboxylation and dehydrogenation (D)</p> Signup and view all the answers

What effect does the accumulation of reaction products have on enzymatic activity?

<p>It decreases the enzymatic velocity. (A)</p> Signup and view all the answers

Which factor can lead to a decrease in enzymatic reaction over time?

<p>Slight denaturation of enzyme. (D)</p> Signup and view all the answers

How do metal ions act as enzyme activators?

<p>They bind to the enzyme to stabilize its structure. (C)</p> Signup and view all the answers

What distinguishes competitive reversible inhibitors from non-reversible inhibitors?

<p>Competitive inhibitors can be displaced by substrate. (C)</p> Signup and view all the answers

What is one way enzymes can be activated by specific agents?

<p>By removing inhibitory peptides. (D)</p> Signup and view all the answers

In what way can temperature affect enzyme activity?

<p>Optimal temperatures increase the rate of reactions. (C)</p> Signup and view all the answers

What type of enzyme is carbonic anhydrase categorized as based on its metal ion?

<p>Metalloenzyme. (C)</p> Signup and view all the answers

What is one effect of pH on enzyme activity?

<p>Extreme pH levels can lead to denaturation of enzymes. (D)</p> Signup and view all the answers

Which statement is true about coenzymes?

<p>They are loosely attached and can be easily dialyzed. (B)</p> Signup and view all the answers

What distinguishes holoenzymes from simple enzymes?

<p>Holoenzymes contain both protein and non-protein components. (D)</p> Signup and view all the answers

What is the function of the active site of an enzyme?

<p>It binds substrates and facilitates chemical reactions. (B)</p> Signup and view all the answers

What type of group is referred to as a prosthetic group?

<p>An inorganic cofactor firmly attached to the protein. (D)</p> Signup and view all the answers

Which of the following is an example of a prosthetic group?

<p>Iron in catalase (B)</p> Signup and view all the answers

Which of the following best describes the nature of simple enzymes?

<p>They are made up only of protein molecules. (B)</p> Signup and view all the answers

Which functional groups in enzymes are crucial for interacting with substrates?

<p>Hydroxyl and sulfhydryl groups (B)</p> Signup and view all the answers

What happens in irreversible inhibition?

<p>The inhibitor modifies the enzyme structure permanently. (B)</p> Signup and view all the answers

Which enzyme class is responsible for catalyzing oxidation-reduction reactions?

<p>Oxidoreductases (B)</p> Signup and view all the answers

Which of the following substances can act as irreversible inhibitors?

<p>Aspirin (B), Antipepsin (D)</p> Signup and view all the answers

How do oxidases function?

<p>They use oxygen to accept electrons. (A)</p> Signup and view all the answers

Which one of the following is NOT classified under oxidoreductases?

<p>Protease (C)</p> Signup and view all the answers

What characterizes suicide inhibitors?

<p>They permanently deactivate the enzyme. (C)</p> Signup and view all the answers

Which type of oxidase forms hydrogen peroxide?

<p>Xanthine oxidase (C)</p> Signup and view all the answers

What is the primary role of antienzymes like antitrypsin?

<p>They irreversibly inhibit digestive enzymes. (D)</p> Signup and view all the answers

Flashcards

What are enzymes?

Enzymes are biological catalysts, meaning they speed up chemical reactions without being consumed in the process.

Where do enzymes come from?

Enzymes are proteins produced by living cells. They are essential for various biochemical processes in all living organisms.

What makes enzymes specific?

Enzymes are highly specific, meaning each enzyme typically catalyzes only one or a small number of reactions. This specificity is due to the shape and chemical properties of the enzyme's active site.

What is the active site of an enzyme?

The active site is a region on the enzyme molecule where the substrate binds, forming an enzyme-substrate complex. This complex is crucial for catalysis.

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What is a holoenzyme?

A holoenzyme is a fully functional enzyme composed of two parts: a protein component called the apoenzyme and a non-protein component called a cofactor.

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What is a cofactor?

A cofactor is a non-protein molecule that is essential for the activity of an enzyme. Cofactors can be either organic or inorganic.

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What is a coenzyme?

A coenzyme is an organic cofactor. They are often derived from vitamins and play crucial roles in enzymatic reactions.

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What is a prosthetic group?

A prosthetic group is a non-protein cofactor that is tightly bound to the enzyme. It's essential for the enzyme's structure and function.

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Activation energy

The minimum energy required for reactants to reach the transition state and form products.

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How do enzymes affect activation energy?

Enzymes lower the activation energy required for a reaction to occur, thereby speeding up the rate of the reaction.

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What is a substrate?

A specific molecule that an enzyme acts upon.

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Absolute Specificity

The enzyme acts only on one specific substrate and never acts on any other compound.

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Relative Specificity

The enzyme acts on one type of bond in chemically related compounds, but at different rates.

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Stereospecificity

The enzyme acts only on one type of optically active substance.

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Group Specificity

The enzyme acts on a specific type of bond at a specific site and attached to a specific group.

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Active site

The active site of an enzyme is a three-dimensional region where the substrate binds.

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Inorganic Catalysts

Catalysts that are not proteins and can be made up of various inorganic molecules like metals, acids, or bases. They are not specific to a particular reaction and can speed up many different reactions.

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Enzymes

Biological catalysts composed of proteins that are highly specific to a particular reaction, meaning they only speed up one or a few specific chemical reactions.

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Inorganic Catalysts: Temperature Stability

Inorganic catalysts are unaffected by temperature changes (within a reasonable range). They can function effectively across a wide range of temperatures.

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Enzymes: Temperature Sensitivity

Enzymes are sensitive to temperature changes. They function optimally within a specific temperature range and become inactive at extreme temperatures.

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Inorganic Catalysts: Specificity

Inorganic catalysts can accelerate a wide range of reactions. They don't show preference for one reaction over another.

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Enzymes: Specificity

Enzymes are highly specific to the reactions they catalyze. Each enzyme is designed to interact with a specific substrate.

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Inorganic Catalysts: Activators

Inorganic catalysts do not require any specific activator to function. They are ready to work on their own.

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Enzymes: Activators

Some enzymes require the presence of an activator, which is often a non-protein molecule that helps the enzyme function efficiently.

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Carboxypeptidase

An enzyme acting on the carboxyl end of a peptide chain, breaking the bond between the terminal amino acid and the rest of the peptide.

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Aminopeptidase

An enzyme acting on the amino end of a peptide chain, breaking the bond between the terminal amino acid and the rest of the peptide.

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Dual Specificity (Enzymes)

The ability of an enzyme to catalyze a reaction involving two different substrates, producing two distinct products in a single reaction step.

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Dual Reactivity (Enzymes)

An enzyme capable of acting on a single substrate, producing a single product through two different reactions.

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Substrate Concentration Effect

The rate of an enzyme-catalyzed reaction is directly proportional to the concentration of the substrate, until all active sites are saturated with the substrate.

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Enzyme Concentration Effect

The rate of an enzyme-catalyzed reaction is directly proportional to the concentration of the enzyme, until all substrate molecules are consumed.

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Michaelis Constant (Km)

The concentration of substrate at which an enzyme reaches half of its maximum velocity (Vmax). A lower Km indicates a higher affinity of the enzyme for the substrate.

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Factors Affecting Enzyme Activity

Factors influencing the rate of an enzyme-catalyzed reaction, including substrate concentration, enzyme concentration, product concentration, temperature, pH, time, activators, and inhibitors.

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How do end products affect enzyme activity?

The accumulation of reaction products usually decreases enzymatic velocity. Products bind to the active site of an enzyme, forming a complex that inhibits activity. During digestion, absorption removes end products, allowing continued enzyme activity.

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What is the effect of temperature on enzyme activity?

Enzymes work best at a specific temperature, called the optimum temperature. Above the optimum, the enzyme can denature and lose its function. Below the optimum, the reaction rate slows down.

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How does pH affect enzyme activity?

Each enzyme has an optimal pH range where it functions best. Extreme pH values can denature the enzyme by altering its shape and active site.

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Why does enzyme activity decrease over time?

Enzymatic reaction rate decreases over time due to factors like slight enzyme denaturation, accumulation of end products, and depletion of substrate.

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What are activators and how do they work?

Activators are substances that increase enzyme activity. They can act by removing inhibitory peptides, providing reducing agents for enzymes containing -SH groups, or acting as metal ions that bind to the enzyme.

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What are the roles of metal ions in enzyme activity?

Metal ions can be loosely bound to enzymes (metal ion activated enzymes) or tightly bound (metalloenzymes). These metals play roles in substrate orientation, redox reactions, and electrostatic stabilization.

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What are inhibitors and how do they affect enzymes?

Inhibitors are substances that reduce enzyme activity. Competitive inhibitors bind to the active site, preventing the substrate from binding. Non-competitive inhibitors bind to a different site on the enzyme, changing its shape and function.

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What are competitive inhibitors?

Competitive inhibitors bind to the active site of an enzyme, competing with the substrate for binding. The effect can be overcome by increasing substrate concentration.

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Irreversible Inhibition

A type of enzyme inhibition where the inhibitor permanently binds to the enzyme's active site, rendering it inactive. This binding is often irreversible, meaning the enzyme cannot regain its activity.

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Anti-enzymes

Substances produced by living organisms that specifically inhibit the activity of certain enzymes. Their names are usually based on their enzyme targets, like antipepsin for pepsin.

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Suicide Inhibitor

A type of irreversible inhibition where the inhibitor becomes part of the enzyme, modifying its active site and permanently inactivating it. The process often involves a reaction between the inhibitor and the enzyme's active site.

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Oxidoreductases

A specific type of enzyme that catalyzes oxidation-reduction reactions. They transfer electrons between molecules, often using oxygen as an electron acceptor.

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Oxidases

A type of oxidoreductase that uses only oxygen as an electron acceptor and forms water or hydrogen peroxide as a byproduct. They're further divided based on the specific product formed (water or hydrogen peroxide).

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Cytochrome oxidase

A specific type of oxidase that uses oxygen to remove hydrogen atoms from their substrate. This process, often called aerobic respiration, plays a critical role in energy production.

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Tyrosinase

A specific type of oxidase that catalyzes the oxidation of tyrosine (an amino acid). This reaction is important in the production of melanin, the pigment responsible for skin and hair color.

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Xanthine oxidase

A specific type of oxidase that uses molecular oxygen to produce hydrogen peroxide. They are involved in various metabolic pathways, such as purine metabolism.

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Study Notes

Enzymes

  • Enzymes are protein catalysts produced by living cells.
  • They increase the rate of chemical reactions, but do not initiate them.
  • They function in all living systems without altering themselves.

Difference between Prosthetic group and Coenzyme

  • Coenzyme: Loosely attached to or free, easily dialyzed and separated, contacts the enzyme only during reaction, always organic (often a vitamin B complex).
  • Prosthetic Group: Firmly attached to the protein, cannot be dialyzed or separated without enzyme destruction, always attached to the protein fraction, mostly inorganic (like Cu in tyrosinase, Zn in carbonic anhydrase, or iron porphyrin in catalase).

Nature of Enzymes

  • Enzymes are protein in nature.
  • They are categorized into two types:
    • Simple enzymes: Composed solely of protein molecules, not bound to any non-protein groups.
    • Holoenzymes: Composed of protein molecules (apoenzyme) and bound to non-protein components (cofactor). Cofactors can be organic (coenzymes) or inorganic (prosthetic groups).

Active Site

  • Enzyme molecules have specialized pockets called active sites.

  • Active sites have two regions:

    • Binding site: The substrate binds to the enzyme, forming an enzyme-substrate (ES) complex.
    • Catalytic site: The ES complex is converted to an enzyme-product (EP) complex, then dissociates into enzyme and products.
  • Each enzyme possesses one or more active centres.

  • The active site contains functional groups (e.g., hydroxyl of serine, phenolic of tyrosine, sulfhydryl of cysteine, or imidazole of histidine) that interact with the substrate.

Difference between Enzyme and Inorganic Catalysts

  • Enzymes: Protein in nature, thermolabile (denatured by heat), specific in reactions, some require activators, activity due to specific groups, need little time.
  • Inorganic Catalysts: Vary in chemical structure, usually thermostable, non-specific, do not need activators, activity due to the whole system, require extra time.

Enzyme Nomenclature

  • Enzymes often named by adding "‐ase" to the substrate name (e.g., urease, maltase, lactase).
  • Nomenclature can also be based on reaction type (e.g., oxidase, reductase, hydrolase).
  • Some enzymes have traditional names (e.g., pepsin, trypsin).
  • Others have names describing both their substrate and the reaction type (e.g., succinate dehydrogenase, pyruvate decarboxylase, and glutamine synthase).

Enzyme Code (EC)

  • Each enzyme has a numerical code, the Enzyme Commission number (EC number), composed of four digits separated by dots.
  • The first digit indicates the enzyme class.
  • The second digit indicates the functional group of the enzyme.
  • The third digit indicates the coenzyme.
  • The fourth digit indicates the substrate.

Enzyme Mechanism

  • Enzyme (E) combines with substrate (S) forming an enzyme-substrate (ES) complex.
  • The enzyme-substrate complex undergoes a reaction, forming an enzyme-product (EP) complex.
  • The enzyme and product (P) dissociate, releasing the product.
  • The enzyme is unchanged and can repeat the process.

Factors Affecting Enzyme Activity

  • Substrate concentration: Increasing substrate concentration increases reaction rate up to a maximum.
  • Enzyme concentration: Reaction rate is proportional to enzyme concentration until substrate is depleted.
  • End product concentration: Accumulated end products decrease enzyme velocity.
  • Temperature: Optimum temperature for human enzymes is near 37°C. Higher temperatures denature enzymes, causing reaction rate to fall.
  • pH: Enzymes exhibit maximum activity within a narrow pH range called optimum pH.
  • Time: Enzymes decrease activity due to denaturation, accumulation of end products and substrate depletion.
  • Activators: Can increase enzyme reaction rate by various mechanisms like removing inhibitory peptides, or providing required metal ions.
  • Inhibitors: Substances that reduce enzyme activity; can be reversible (competitive, non-competitive, uncompetitive) or irreversible.

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Description

This quiz explores key concepts related to enzyme specificity and function in chemical reactions. Topics include transition states, enzyme roles, specificity types, and the importance of enzyme nomenclature. Test your understanding of how enzymes operate and their significance in biochemical processes.

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