Enzyme Reactions and Molecular Bindings

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Questions and Answers

Which term describes a molecule that binds to a receptor and activates it?

  • Agonist (correct)
  • Antagonist
  • PAMP
  • Ligand

What is the primary structural feature of molecules recognized by MAMP receptors, such as DNA and lipopolysaccharides?

  • A complex of short fatty acid chains
  • A small, cyclic carbohydrate
  • A single, linear protein chain
  • A recurring polymer structure (correct)

What is the main function of the Leucine Rich Repeat (LRR) domain found in many immune receptors?

  • To activate the TIR domain
  • To recruit adaptor proteins
  • To anchor the receptor to the cell membrane
  • To bind the agonist molecule (correct)

How many transmembrane anchoring sites are typically present in the receptors mentioned in the text?

<p>One (C)</p> Signup and view all the answers

What is the role of the TIR domain in signal transduction?

<p>Recruiting adaptor proteins for signal transmission (B)</p> Signup and view all the answers

What key event typically triggers activation of the TIR domain?

<p>Receptor dimerization (B)</p> Signup and view all the answers

Which of the following is a characteristic of NOD receptors?

<p>They are soluble receptors found in the cytosol (A)</p> Signup and view all the answers

What is the function of procaspase 1 within the inflammasome?

<p>It becomes an active component that is activated during inflammation (B)</p> Signup and view all the answers

What is the primary role of fMet-Leu-Phe receptors in phagocytosis?

<p>To recognize and bind to bacterial peptides, initiating engulfment. (B)</p> Signup and view all the answers

Which protein is responsible for assembling the NADPH oxidase complex on the phagosomal membrane?

<p>Rac2. (A)</p> Signup and view all the answers

What is the direct outcome of the NADPH oxidase reaction?

<p>Generation of superoxide anions (O₂⁻). (D)</p> Signup and view all the answers

What is the role of potassium (K⁺) and hydrogen ions (H⁺) in the phagosome?

<p>To neutralize charged ROS and maintain ionic balance. (B)</p> Signup and view all the answers

What role does ICAM-1 play in leukocyte extravasation?

<p>It binds to integrins on leukocytes, causing them to firmly adhere to the endothelium. (A)</p> Signup and view all the answers

Which enzyme converts superoxide (O₂⁻) into hydrogen peroxide (H₂O₂)?

<p>Superoxide dismutase (SOD). (B)</p> Signup and view all the answers

Which process DIRECTLY contributes to the activation of proteases within the phagosome?

<p>Acidification of the phagosome. (C)</p> Signup and view all the answers

Which event directly follows the firm adhesion of leukocytes to the endothelium during inflammation?

<p>Transmigration (diapedesis). (A)</p> Signup and view all the answers

What is the function of the protease secreted by leukocytes during transmigration?

<p>To break the tight junctions between endothelial cells. (D)</p> Signup and view all the answers

Which of these is NOT a key outcome of the respiratory burst?

<p>Decreased pH environment. (C)</p> Signup and view all the answers

What is the primary mechanism by which neutrophils and macrophages eliminate pathogens?

<p>Phagocytosis. (B)</p> Signup and view all the answers

What is the role of the phagosome in the destruction of pathogens?

<p>It isolates the pathogen within the cell and facilitates its degradation. (B)</p> Signup and view all the answers

What is the role of mannose receptors in phagocytosis?

<p>To specifically bind to mannose found on the surface of many bacteria. (B)</p> Signup and view all the answers

Which of the following describes the correct sequence of events during phagocytosis?

<p>Recognition and binding, invagination and engulfment, phagosome-lysosome fusion, degradation, exocytosis. (D)</p> Signup and view all the answers

What is the 'respiratory burst' in neutrophils primarily responsible for?

<p>Releasing reactive oxygen species (ROS) to destroy pathogens. (C)</p> Signup and view all the answers

What is the primary function of caspase-1?

<p>To cleave specific protein targets, activating them (A)</p> Signup and view all the answers

Which of the following best describes the role of the inflammasome?

<p>To transform inactive procaspase-1 into active caspase-1. (B)</p> Signup and view all the answers

What complex is essential for producing ROS during the respiratory burst?

<p>The NADPH oxidase complex. (A)</p> Signup and view all the answers

What is the role of the adaptor protein in the inflammasome complex?

<p>To bind both NLRP and procaspase-1, bringing them together. (B)</p> Signup and view all the answers

How does active IL-1 contribute to inflammation?

<p>It is secreted from the cell, activating inflammation in nearby cells. (C)</p> Signup and view all the answers

Which of the following is characteristic of necrosis?

<p>A messy cell death where the cellular contents are released. (D)</p> Signup and view all the answers

How does necroptosis differ from apoptosis?

<p>The cell explodes, and releases its contents, similar to necrosis. (D)</p> Signup and view all the answers

Which of the following is NOT a sterile activator of the inflammasome?

<p>Pathogenic bacteria. (C)</p> Signup and view all the answers

What is the primary function of Interleukin-1 (IL-1) in the context of inflammation?

<p>To raise body temperature, enhancing the effectiveness of T cells and inhibiting pathogen survival. (D)</p> Signup and view all the answers

Which of the following factors can activate the inflammasome?

<p>High ATP concentration outside the cell. (C)</p> Signup and view all the answers

How is heat generated in fatty tissues when the body aims to raise its temperature?

<p>By the mitochondria producing heat as a biproduct rather than ATP. (D)</p> Signup and view all the answers

What is the primary function of leukocyte rolling in the context of inflammation?

<p>To enable stronger integrin-mediated adhesion to facilitate migration into tissues. (A)</p> Signup and view all the answers

Why does the body need a signal to maintain the elevated temperature during inflammation?

<p>To prevent the activation of sweating and loss of produced heat. (C)</p> Signup and view all the answers

What is unique about the activation of Tumor Necrosis Factor (TNF)?

<p>It needs to form a homotrimer before it can bind to its receptor. (A)</p> Signup and view all the answers

How does the concentration of cytokines near an inflammation site impact leukocyte adhesion?

<p>Cytokines increase the expression of adhesion molecules on the endothelium, enhancing adhesion. (C)</p> Signup and view all the answers

What causes the release of the extracellular part of TNF from the cell membrane?

<p>The release of proteins that cleave the cytokine. (A)</p> Signup and view all the answers

What is the role of E-selectin in leukocyte movement during inflammation?

<p>It decreases the rolling speed of leukocytes as they approach inflammation zones. (C)</p> Signup and view all the answers

Which adhesion molecule binds with integrin for strong adhesion to the endothelium?

<p>ICAM. (D)</p> Signup and view all the answers

What does Erythropoietin stimulate in the body?

<p>The production of red blood cells in response to low oxygen levels. (A)</p> Signup and view all the answers

What is the main function of GM-CSF?

<p>It stimulates the production and differentiation of granulocytes and macrophages. (C)</p> Signup and view all the answers

What is the function of integrin in the context of leukocyte adhesion?

<p>To bind with ICAM on the endothelial surface for strong adhesion. (A)</p> Signup and view all the answers

What role does IL-6 play during inflammation?

<p>It stimulates the differentiation and proliferation of immune cells and supports the acute-phase response. (B)</p> Signup and view all the answers

Which of the following best describes the interaction between sialyl-LewisX (s-Le^x) and selectins?

<p>They are transient, allowing leukocytes to roll along the endothelium. (A)</p> Signup and view all the answers

During an inflammation, what is the role of proinflammatory cytokines like TNF-α and IL-1β?

<p>To activate endothelial cells and increase selectin expression. (A)</p> Signup and view all the answers

What causes leukocytes to stop rolling and firmly adhere to the endothelium during inflammation?

<p>The high-affinity binding of integrins on leukocytes to ICAM on endothelial cells. (B)</p> Signup and view all the answers

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Flashcards

Ligand

A molecule that binds to another molecule and can either activate or inhibit its function.

Agonist

A ligand that binds to another molecule and activates its function.

Antagonist

A ligand that binds to another molecule and inhibits its function.

NOD

A type of receptor found in the cytoplasm of cells, responsible for detecting and responding to MAMPs (microbe-associated molecular patterns).

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Inflammasome

A protein complex that activates inflammation, containing a sensor, an adaptor protein (ASC), and procaspase 1.

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Agonist Binder

The part of a receptor that binds to the agonist (ligand).

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ASC

A type of adaptor protein that is part of the inflammasome. It helps to activate procaspase 1.

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Procaspase 1

A protein complex that activates inflammation. It has a subunit that is activated to initiate inflammation.

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Phagocyte

A type of white blood cell that engulfs and destroys pathogens like bacteria.

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Pro-IL-1

An inactive form of a protein that requires cleavage by caspase-1 to become activated.

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Phagosome

A small bubble-like structure inside a phagocyte that encapsulates a pathogen after engulfment.

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Pathogen Engulfment

The process by which a phagocyte engulfs and traps a pathogen within a phagosome.

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Caspase-1

An enzyme that cleaves and activates specific proteins, including procaspase-1, triggering inflammation.

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Apoptosis

A type of programmed cell death characterized by a regulated self-destruction, resulting in a 'clean' death.

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Rac2

A signaling molecule that activates the NADPH oxidase complex on the phagosomal membrane.

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Necroptosis

A type of cell death similar to necrosis, but triggered by a controlled signaling pathway. It promotes inflammation by releasing intracellular contents.

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NADPH Oxidase

An enzyme complex found on the phagosome membrane that generates reactive oxygen species (ROS) to kill pathogens.

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Reactive Oxygen Species (ROS)

A highly reactive chemical species that damages and kills pathogens within the phagosome.

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Necrosis

A type of cell death characterized by uncontrolled rupture and release of cellular contents causing inflammation.

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Phagosome Acidification

The process of increasing the acidity (lowering pH) within the phagosome, enhancing the activity of digestive enzymes.

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Inflammasome Agonists

Molecules that activate the inflammasome, initiating inflammation. They can be either sterile (derived from the body) or pathogenic (derived from pathogens).

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Adaptor Protein

A protein that acts as an adaptor, connecting the NLRP protein to procaspase-1, bringing them together for caspase-1 activation.

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Granule Proteases

Enzymes contained within the phagosome that break down the engulfed pathogen.

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What molecule is expressed on endothelial cells during inflammation and attracts leukocytes?

ICAM-1 (Intercellular Adhesion Molecule-1) is expressed on endothelial cells during inflammation, attracting leukocytes to the site of inflammation.

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What molecule on leukocytes binds strongly to ICAM-1?

Integrins are activated on leukocytes during inflammation, allowing them to bind strongly to ICAM-1 on endothelial cells.

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What is the process called when leukocytes move from blood vessels into tissues?

The process of leukocytes moving from the bloodstream into inflamed tissue is called diapedesis.

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How do leukocytes break through the endothelial layer during diapedesis?

Leukocytes secrete proteases that break down tight junctions between endothelial cells, allowing them to pass into the tissue.

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What is the process called where phagocytes engulf and destroy pathogens?

Phagocytosis is a process where phagocytes engulf and destroy pathogens.

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How do phagocytes recognize pathogens?

Phagocytes recognize pathogens through specific receptors, such as PRRs that bind to PAMPs or opsonin receptors that bind antibodies/complement.

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What happens after the phagosome is formed during phagocytosis?

The phagosome formed after engulfment fuses with a lysosome to form a phagolysosome, which contains enzymes for degrading the pathogen.

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What is the respiratory burst and what is its purpose?

The respiratory burst is a process where neutrophils release reactive oxygen species (ROS) in the phagosome to destroy pathogens.

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Leukocyte Rolling

A process where white blood cells (leukocytes) roll along the inner lining of blood vessels, facilitated by weak interactions between sialyl-Lewis X (s-Le^x) on leukocytes and selectins (like E-selectin) on endothelial cells.

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Sialyl-Lewis X (s-Le^x)

A sugar molecule on the surface of leukocytes that binds to selectins, enabling rolling.

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Selectins (e.g., E-selectin)

Molecules located on the surface of endothelial cells that help leukocytes roll, especially during inflammation. These molecules bind to sialyl-Lewis X on WBCs.

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Leukocyte Adhesion

A process where leukocytes slow down and adhere firmly to the endothelium, preparing to migrate into tissues.

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Intercellular Adhesion Molecule (ICAM)

A molecule on the surface of endothelial cells that binds to Integrins on leukocytes, initiating firm adhesion during inflammation.

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Integrin

A molecule on the surface of leukocytes that binds to ICAM on endothelial cells during inflammation. This binding strengthens adhesion and stops the leukocyte.

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Cytokines (e.g., TNF-α, IL-1β)

Signaling molecules that trigger inflammation and increase the expression of adhesion molecules on endothelial cells. This strengthens adhesion and promotes leukocyte migration into tissues.

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Endothelium

The inner lining of blood vessels.

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Interleukin-1 (IL-1)

A cytokine that plays a crucial role in the body's response to inflammation by raising body temperature. It helps to suppress the growth of pathogenic bacteria and allows T cells to function more effectively at higher temperatures. Increased levels of IL-1β signal the hypothalamus to maintain the new temperature.

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Hematopoietin Superfamily

A family of cytokines with diverse functions. Its most well-known members include erythropoietin, which stimulates red blood cell production, and GM-CSF, which stimulates the production of white blood cells like neutrophils and macrophages.

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Tumor Necrosis Factor (TNF)

A cytokine that plays a key role in inflammation, particularly associated with inflammatory bowel disease (IBD). It functions as a homotrimer, meaning it needs three subunits to bind to its receptor and trigger inflammation.

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What is the role of IL-1 in fever?

A cytokine that triggers fever during inflammation. It does this by signaling the hypothalamus to maintain a new, higher temperature, boosting the immune system's efficiency.

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What is the function of GM-CSF?

A cytokine that stimulates the production and differentiation of white blood cells, specifically granulocytes (e.g., neutrophils, eosinophils) and macrophages, from hematopoietic stem cells in the bone marrow. It plays a crucial role in the body's response to infection.

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What is the role of IL-6 in the immune system?

A cytokine that plays a vital role in stimulating the differentiation and proliferation of immune cells, including B cells and T cells. It also plays a key role in the acute-phase response during inflammation.

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Cytokines are examples of what?

IL-1, TNF, and IL-6 are all examples of what?

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What is the role of IL-1, TNF, and IL-6 during inflammation?

IL-1, TNF, and IL-6 are all essential for what?

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Study Notes

Recap

  • Substrate: The substance on which an enzyme acts.
  • Ligand: A molecule that binds to another molecule; often used pharmacologically to describe agonists and antagonists.
  • Agonist: A ligand that binds to a receptor and activates it.
  • Antagonist: A ligand that binds to a receptor but does not activate it, instead inhibiting the agonist's action.
  • Ligand = PAMP = agonist: These terms are interchangeable in context.

What characterises MAMP's/agonists of all the sensors?

  • The molecules that bind to the receptors have a repeating polymer structure (e.g., DNA, RNA, lipopolysaccharide).
  • They have an agonist-binding area rich in leucine (Leucine Rich Repeat). This area is on the outside of the receptor.
  • The transmembranal area of the receptor has an anchoring site (unlike seven-transmembrane receptors).
  • The TIR domain is critical for recruiting proteins that relay the signal.
  • Dimerization of the TIR domain activates the signal cascade, leading to gene activation that triggers inflammation.
  • Dimerization usually occurs at a certain concentration of the agonist near the cell surface.

Intracellular Sensing

  • The NOD family of receptors has a Leucine-Rich Repeat domain and a domain for adaptor protein recruitment.
  • NOD receptors are soluble and found in the cytosol, identifying MAMPs.
  • NOD receptors detect bacterial entry into the cytoplasm and trigger an immune response.
  • NODs are similar in structure to other receptors in the cell, making identification of similar receptors relatively straightforward.

The Inflammasome

  • The inflammasome is a protein complex that initiates inflammation.
  • It includes components (e.g., macrophages) coloured due to cytoskeletal actin.
  • The activated inflammasome triggers inflammation.
  • The inflammasome can lead to the activation of programmed cell death (pyroptosis).

Three Main Components of the Inflammasome

  • The sensor recognizes the danger signal.
  • An adaptor protein transmits the signal to an active enzyme (procaspase-1).
  • Procaspase-1 is activated by the adaptor protein and cleaves other inflammatory proteins.

Cytoplasmic Sensors of Viral RNA

  • RIG-I and MDA-5 are receptors in the cytoplasm that recognize viral RNA with a triphosphate modification.
  • They activate the production of inflammatory cytokines and interferons.
  • These sensors were initially not well understood until the mechanism of their function was better-understood.

Extracellular Sensing

  • Toll-like receptors (TLRs) are extracellular receptors that recognize pathogen-associated molecular patterns (PAMPs) such as lipopolysaccharide.

Intracellular Sensing (Recap)

  • NOD-like receptors (NLRs) are intracellular receptors that recognize bacterial components like peptidoglycans, activating inflammation.

Cytokines

  • Cytokines are small proteins that function as messengers in the immune system, coordinating an immune response:
    • Autocrine: effect the current cell releasing them.
    • Paracrine: effect adjacent cells.
    • Endocrine: effect cells far away.
  • IL-1 family regulates inflammation and cell responses.

Adhesion Molecules

  • Selectins (P-selectin, E-selectin) bind to carbohydrate ligands on white blood cells, initiating rolling along endothelial cells.
  • Integrins (LFA-1, ICAM-1) mediate stronger adhesion and subsequent extravasation of WBCs into tissues. This tight binding allows cells to leave blood vessels and enter tissues effectively.

Elimination

  • Phagocytes (e.g., neutrophils, macrophages) recognize and eliminate pathogens through phagocytosis, which involves ingestion and destruction of the pathogen.
  • The respiratory burst is initiated to produce reactive oxygen species which are toxic to pathogens within phagocytes.

Ion Influx and Acidification

  • K+ and H+ ions move into phagosomes, neutralizing ROS and aiding activation of digestive enzymes
  • This neutralisation creates a balance of charge and aids in the proper function of the enzyme's action.

Activation of NADPH Oxidase

  • The NADPH oxidase complex on the phagosome builds up a potent reactive oxygen species (ROS) which effectively neutralizes the pathogen.

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